mizlab 0.1.0 → 0.1.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/.github/workflows/deploy.yml +1 -1
- data/lib/mizlab/version.rb +1 -1
- data/lib/mizlab.rb +3 -7
- metadata +1 -1
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA256:
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-
metadata.gz:
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data.tar.gz:
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+
metadata.gz: df8aef7891b1d4362295bf293deeab71c0df4b1acdb7e67d7fbc79fe01a7f047
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4
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data.tar.gz: 836d63375f5b57f0dee6c8b52602870e1bec91e49a0af6caa7133c588bf8298f
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 5a27e47c4d641c989a5c3d0d744f77316cd898a4172bc96e3231cc1d7b1c8f9421cf521f1c61d4af81c42f8e4acb5498702ba61c19b51200f2bb9b0a9b3d4a94
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7
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data.tar.gz: a62744a6682e782a68e729fecc00e31d3685768acb52a4e86243037de2a07b96de1527d6b0c91378e1c0245061815c6663c311cefdf7fdd1ba17b27cdcbcd333
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data/lib/mizlab/version.rb
CHANGED
data/lib/mizlab.rb
CHANGED
@@ -3,6 +3,7 @@
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require_relative "mizlab/version"
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require "set"
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require "bio"
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require "stringio"
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module Mizlab
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class << self
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@@ -106,7 +107,7 @@ module Mizlab
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end
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def fetch_nucleotide(accession)
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-
return Bio::NCBI::REST::EFetch.
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return Bio::NCBI::REST::EFetch.nucleotide(accession)
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end
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# get patterns from filled pixs.
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@@ -200,14 +201,9 @@ module Mizlab
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# @param [String] entries Entries as string
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# @yield [Object] Object that match entry format.
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def parse(entries)
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-
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File.open(tmp_file_name, "w") do |f|
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f.puts entries
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end
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Bio::FlatFile.auto(tmp_file_name).each_entry do |e|
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Bio::FlatFile.auto(StringIO.new(entries)).each_entry do |e|
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yield e
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end
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-
File.delete(tmp_file_name)
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end
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end
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end
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