mizlab 0.1.0 → 0.1.2

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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+  data.tar.gz: 836d63375f5b57f0dee6c8b52602870e1bec91e49a0af6caa7133c588bf8298f
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data/.github/workflows/deploy.yml

@@ -18,4 +18,4 @@ jobs:
           # Optional, will publish to RubyGems if specified
           api_key: ${{secrets.RUBYGEMS_API_KEY}}
           # Optional, will publish to GitHub Packages if specified
-          github_token: ${{secrets.GITHUB_TOKEN}}
+          # github_token: ${{secrets.GITHUB_TOKEN}}

data/lib/mizlab/version.rb

@@ -1,5 +1,5 @@
 # frozen_string_literal: true
 
 module Mizlab
-  VERSION = "0.1.0"
+  VERSION = "0.1.2"
 end

data/lib/mizlab.rb

@@ -3,6 +3,7 @@
 require_relative "mizlab/version"
 require "set"
 require "bio"
+require "stringio"
 
 module Mizlab
   class << self
@@ -106,7 +107,7 @@ module Mizlab
     end
 
     def fetch_nucleotide(accession)
-      return Bio::NCBI::REST::EFetch.protein(accession)
+      return Bio::NCBI::REST::EFetch.nucleotide(accession)
     end
 
     # get patterns from filled pixs.
@@ -200,14 +201,9 @@ module Mizlab
     # @param  [String] entries Entries as string
     # @yield  [Object] Object that match entry format.
     def parse(entries)
-      tmp_file_name = ".mizlab_fetch_tmpfile"
-      File.open(tmp_file_name, "w") do |f|
-        f.puts entries
-      end
-      Bio::FlatFile.auto(tmp_file_name).each_entry do |e|
+      Bio::FlatFile.auto(StringIO.new(entries)).each_entry do |e|
         yield e
       end
-      File.delete(tmp_file_name)
     end
   end
 end

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: mizlab
 version: !ruby/object:Gem::Version
-  version: 0.1.0
+  version: 0.1.2
 platform: ruby
 authors:
 - Omochice