minimap2 0.2.29.0 → 0.2.29.1

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data/README.md CHANGED
@@ -2,10 +2,10 @@
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  [![Gem Version](https://img.shields.io/gem/v/minimap2?color=brightgreen)](https://rubygems.org/gems/minimap2)
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  [![test](https://github.com/kojix2/ruby-minimap2/actions/workflows/ci.yml/badge.svg)](https://github.com/kojix2/ruby-minimap2/actions/workflows/ci.yml)
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- [![Docs Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://rubydoc.info/gems/minimap2)
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  [![Docs Latest](https://img.shields.io/badge/docs-latest-blue.svg)](https://kojix2.github.io/ruby-minimap2/)
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  [![The MIT License](https://img.shields.io/badge/license-MIT-blue.svg)](LICENSE.txt)
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  [![DOI](https://zenodo.org/badge/325711305.svg)](https://zenodo.org/badge/latestdoi/325711305)
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+ [![Lines of Code](https://img.shields.io/endpoint?url=https%3A%2F%2Ftokei.kojix2.net%2Fbadge%2Fgithub%2Fkojix2%2Fruby-minimap2%2Flines)](https://tokei.kojix2.net/github/kojix2/ruby-minimap2)
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  :dna: [minimap2](https://github.com/lh3/minimap2) - the long-read mapper - for [Ruby](https://github.com/ruby/ruby)
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@@ -216,8 +216,8 @@ module Minimap2
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  :transition, :int, # transition mismatch score (A:G, C:T)
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  :sc_ambi, :int, # score when one or both bases are "N"
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  :noncan, :int, # cost of non-canonical splicing sites
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- :junc_pen, :int,
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- :junc_bonus, :int,
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+ :junc_bonus, :int, # bonus for a splice site in annotation
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+ :junc_pen, :int, # penalty for GT- or -AG not scored in --spsc
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  :zdrop, :int, # break alignment if alignment score drops too fast along the diagonal
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  :zdrop_inv, :int,
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  :end_bonus, :int,
@@ -1,5 +1,5 @@
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  # frozen_string_literal: true
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  module Minimap2
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- VERSION = "0.2.29.0"
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+ VERSION = "0.2.29.1"
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  end
metadata CHANGED
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  --- !ruby/object:Gem::Specification
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  name: minimap2
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  version: !ruby/object:Gem::Version
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- version: 0.2.29.0
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+ version: 0.2.29.1
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  platform: ruby
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  authors:
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  - kojix2
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- autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2025-04-20 00:00:00.000000000 Z
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+ date: 1980-01-02 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: ffi
@@ -151,7 +150,6 @@ homepage: https://github.com/kojix2/ruby-minimap2
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  licenses:
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  - MIT
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  metadata: {}
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- post_install_message:
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  rdoc_options: []
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  require_paths:
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  - lib
@@ -166,8 +164,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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  - !ruby/object:Gem::Version
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  version: '0'
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  requirements: []
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- rubygems_version: 3.4.19
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- signing_key:
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+ rubygems_version: 3.6.9
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  specification_version: 4
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  summary: minimap2
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  test_files: []