minimap2 0.2.29.0 → 0.2.29.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/README.md +1 -1
- data/lib/minimap2/ffi/constants.rb +2 -2
- data/lib/minimap2/version.rb +1 -1
- metadata +3 -6
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA256:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: 10ad858934a06fbdf6c5b971a593df82cbf57b999aff967c542576cd53cd2344
|
|
4
|
+
data.tar.gz: f6ca98e3d2dd06d37861228eaac34c5472238e4c2ab3488e489e503876812019
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 55760274861cb9c3ad8cdb595b9f5d1877c465574dfa252d7c6ec58370d11aaf43c60217ad846e9cdf887684268cf8503073da5724c7392e4006b8d6decba505
|
|
7
|
+
data.tar.gz: aac0a3e2c7e01d8c79962e27cafd3819d8c94f409e2674a450b3f287a59889aa1c581cfe968c15d057013bb3addcd4849fcb9e69ac6b615bab9d0f3435fd4150
|
data/README.md
CHANGED
|
@@ -2,10 +2,10 @@
|
|
|
2
2
|
|
|
3
3
|
[](https://rubygems.org/gems/minimap2)
|
|
4
4
|
[](https://github.com/kojix2/ruby-minimap2/actions/workflows/ci.yml)
|
|
5
|
-
[](https://rubydoc.info/gems/minimap2)
|
|
6
5
|
[](https://kojix2.github.io/ruby-minimap2/)
|
|
7
6
|
[](LICENSE.txt)
|
|
8
7
|
[](https://zenodo.org/badge/latestdoi/325711305)
|
|
8
|
+
[](https://tokei.kojix2.net/github/kojix2/ruby-minimap2)
|
|
9
9
|
|
|
10
10
|
:dna: [minimap2](https://github.com/lh3/minimap2) - the long-read mapper - for [Ruby](https://github.com/ruby/ruby)
|
|
11
11
|
|
|
@@ -216,8 +216,8 @@ module Minimap2
|
|
|
216
216
|
:transition, :int, # transition mismatch score (A:G, C:T)
|
|
217
217
|
:sc_ambi, :int, # score when one or both bases are "N"
|
|
218
218
|
:noncan, :int, # cost of non-canonical splicing sites
|
|
219
|
-
:
|
|
220
|
-
:
|
|
219
|
+
:junc_bonus, :int, # bonus for a splice site in annotation
|
|
220
|
+
:junc_pen, :int, # penalty for GT- or -AG not scored in --spsc
|
|
221
221
|
:zdrop, :int, # break alignment if alignment score drops too fast along the diagonal
|
|
222
222
|
:zdrop_inv, :int,
|
|
223
223
|
:end_bonus, :int,
|
data/lib/minimap2/version.rb
CHANGED
metadata
CHANGED
|
@@ -1,14 +1,13 @@
|
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
|
2
2
|
name: minimap2
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.2.29.
|
|
4
|
+
version: 0.2.29.1
|
|
5
5
|
platform: ruby
|
|
6
6
|
authors:
|
|
7
7
|
- kojix2
|
|
8
|
-
autorequire:
|
|
9
8
|
bindir: bin
|
|
10
9
|
cert_chain: []
|
|
11
|
-
date:
|
|
10
|
+
date: 1980-01-02 00:00:00.000000000 Z
|
|
12
11
|
dependencies:
|
|
13
12
|
- !ruby/object:Gem::Dependency
|
|
14
13
|
name: ffi
|
|
@@ -151,7 +150,6 @@ homepage: https://github.com/kojix2/ruby-minimap2
|
|
|
151
150
|
licenses:
|
|
152
151
|
- MIT
|
|
153
152
|
metadata: {}
|
|
154
|
-
post_install_message:
|
|
155
153
|
rdoc_options: []
|
|
156
154
|
require_paths:
|
|
157
155
|
- lib
|
|
@@ -166,8 +164,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
|
166
164
|
- !ruby/object:Gem::Version
|
|
167
165
|
version: '0'
|
|
168
166
|
requirements: []
|
|
169
|
-
rubygems_version: 3.
|
|
170
|
-
signing_key:
|
|
167
|
+
rubygems_version: 3.6.9
|
|
171
168
|
specification_version: 4
|
|
172
169
|
summary: minimap2
|
|
173
170
|
test_files: []
|