minimap2 0.2.24.6 → 0.2.25.0

Sign up to get free protection for your applications and to get access to all the features.
Files changed (102) hide show
  1. checksums.yaml +4 -4
  2. data/ext/minimap2.patch +3 -3
  3. data/lib/minimap2/aligner.rb +4 -0
  4. data/lib/minimap2/ffi/constants.rb +90 -88
  5. data/lib/minimap2/version.rb +2 -2
  6. metadata +1 -97
  7. data/ext/minimap2/lib/simde/CONTRIBUTING.md +0 -114
  8. data/ext/minimap2/lib/simde/COPYING +0 -20
  9. data/ext/minimap2/lib/simde/README.md +0 -333
  10. data/ext/minimap2/lib/simde/amalgamate.py +0 -58
  11. data/ext/minimap2/lib/simde/meson.build +0 -33
  12. data/ext/minimap2/lib/simde/netlify.toml +0 -20
  13. data/ext/minimap2/lib/simde/simde/arm/neon/float32x2.h +0 -140
  14. data/ext/minimap2/lib/simde/simde/arm/neon/float32x4.h +0 -137
  15. data/ext/minimap2/lib/simde/simde/arm/neon/float64x1.h +0 -142
  16. data/ext/minimap2/lib/simde/simde/arm/neon/float64x2.h +0 -145
  17. data/ext/minimap2/lib/simde/simde/arm/neon/int16x4.h +0 -140
  18. data/ext/minimap2/lib/simde/simde/arm/neon/int16x8.h +0 -145
  19. data/ext/minimap2/lib/simde/simde/arm/neon/int32x2.h +0 -140
  20. data/ext/minimap2/lib/simde/simde/arm/neon/int32x4.h +0 -143
  21. data/ext/minimap2/lib/simde/simde/arm/neon/int64x1.h +0 -137
  22. data/ext/minimap2/lib/simde/simde/arm/neon/int64x2.h +0 -141
  23. data/ext/minimap2/lib/simde/simde/arm/neon/int8x16.h +0 -147
  24. data/ext/minimap2/lib/simde/simde/arm/neon/int8x8.h +0 -141
  25. data/ext/minimap2/lib/simde/simde/arm/neon/uint16x4.h +0 -134
  26. data/ext/minimap2/lib/simde/simde/arm/neon/uint16x8.h +0 -138
  27. data/ext/minimap2/lib/simde/simde/arm/neon/uint32x2.h +0 -134
  28. data/ext/minimap2/lib/simde/simde/arm/neon/uint32x4.h +0 -137
  29. data/ext/minimap2/lib/simde/simde/arm/neon/uint64x1.h +0 -131
  30. data/ext/minimap2/lib/simde/simde/arm/neon/uint64x2.h +0 -135
  31. data/ext/minimap2/lib/simde/simde/arm/neon/uint8x16.h +0 -141
  32. data/ext/minimap2/lib/simde/simde/arm/neon/uint8x8.h +0 -135
  33. data/ext/minimap2/lib/simde/simde/arm/neon.h +0 -97
  34. data/ext/minimap2/lib/simde/simde/check.h +0 -267
  35. data/ext/minimap2/lib/simde/simde/debug-trap.h +0 -83
  36. data/ext/minimap2/lib/simde/simde/hedley.h +0 -1899
  37. data/ext/minimap2/lib/simde/simde/simde-arch.h +0 -445
  38. data/ext/minimap2/lib/simde/simde/simde-common.h +0 -697
  39. data/ext/minimap2/lib/simde/simde/x86/avx.h +0 -5385
  40. data/ext/minimap2/lib/simde/simde/x86/avx2.h +0 -2402
  41. data/ext/minimap2/lib/simde/simde/x86/avx512bw.h +0 -391
  42. data/ext/minimap2/lib/simde/simde/x86/avx512f.h +0 -3389
  43. data/ext/minimap2/lib/simde/simde/x86/avx512vl.h +0 -112
  44. data/ext/minimap2/lib/simde/simde/x86/fma.h +0 -659
  45. data/ext/minimap2/lib/simde/simde/x86/mmx.h +0 -2210
  46. data/ext/minimap2/lib/simde/simde/x86/sse.h +0 -3696
  47. data/ext/minimap2/lib/simde/simde/x86/sse2.h +0 -5991
  48. data/ext/minimap2/lib/simde/simde/x86/sse3.h +0 -343
  49. data/ext/minimap2/lib/simde/simde/x86/sse4.1.h +0 -1783
  50. data/ext/minimap2/lib/simde/simde/x86/sse4.2.h +0 -105
  51. data/ext/minimap2/lib/simde/simde/x86/ssse3.h +0 -1053
  52. data/ext/minimap2/lib/simde/simde/x86/svml.h +0 -543
  53. data/ext/minimap2/lib/simde/test/CMakeLists.txt +0 -166
  54. data/ext/minimap2/lib/simde/test/arm/meson.build +0 -4
  55. data/ext/minimap2/lib/simde/test/arm/neon/meson.build +0 -23
  56. data/ext/minimap2/lib/simde/test/arm/neon/skel.c +0 -871
  57. data/ext/minimap2/lib/simde/test/arm/neon/test-neon-internal.h +0 -134
  58. data/ext/minimap2/lib/simde/test/arm/neon/test-neon.c +0 -39
  59. data/ext/minimap2/lib/simde/test/arm/neon/test-neon.h +0 -10
  60. data/ext/minimap2/lib/simde/test/arm/neon/vadd.c +0 -1260
  61. data/ext/minimap2/lib/simde/test/arm/neon/vdup_n.c +0 -873
  62. data/ext/minimap2/lib/simde/test/arm/neon/vmul.c +0 -1084
  63. data/ext/minimap2/lib/simde/test/arm/neon/vsub.c +0 -1260
  64. data/ext/minimap2/lib/simde/test/arm/test-arm-internal.h +0 -18
  65. data/ext/minimap2/lib/simde/test/arm/test-arm.c +0 -20
  66. data/ext/minimap2/lib/simde/test/arm/test-arm.h +0 -8
  67. data/ext/minimap2/lib/simde/test/cmake/AddCompilerFlags.cmake +0 -171
  68. data/ext/minimap2/lib/simde/test/cmake/ExtraWarningFlags.cmake +0 -68
  69. data/ext/minimap2/lib/simde/test/meson.build +0 -64
  70. data/ext/minimap2/lib/simde/test/munit/COPYING +0 -21
  71. data/ext/minimap2/lib/simde/test/munit/Makefile +0 -55
  72. data/ext/minimap2/lib/simde/test/munit/README.md +0 -54
  73. data/ext/minimap2/lib/simde/test/munit/example.c +0 -351
  74. data/ext/minimap2/lib/simde/test/munit/meson.build +0 -37
  75. data/ext/minimap2/lib/simde/test/munit/munit.c +0 -2055
  76. data/ext/minimap2/lib/simde/test/munit/munit.h +0 -535
  77. data/ext/minimap2/lib/simde/test/run-tests.c +0 -20
  78. data/ext/minimap2/lib/simde/test/run-tests.h +0 -260
  79. data/ext/minimap2/lib/simde/test/x86/avx.c +0 -13752
  80. data/ext/minimap2/lib/simde/test/x86/avx2.c +0 -9977
  81. data/ext/minimap2/lib/simde/test/x86/avx512bw.c +0 -2664
  82. data/ext/minimap2/lib/simde/test/x86/avx512f.c +0 -10416
  83. data/ext/minimap2/lib/simde/test/x86/avx512vl.c +0 -210
  84. data/ext/minimap2/lib/simde/test/x86/fma.c +0 -2557
  85. data/ext/minimap2/lib/simde/test/x86/meson.build +0 -33
  86. data/ext/minimap2/lib/simde/test/x86/mmx.c +0 -2878
  87. data/ext/minimap2/lib/simde/test/x86/skel.c +0 -2984
  88. data/ext/minimap2/lib/simde/test/x86/sse.c +0 -5121
  89. data/ext/minimap2/lib/simde/test/x86/sse2.c +0 -9860
  90. data/ext/minimap2/lib/simde/test/x86/sse3.c +0 -486
  91. data/ext/minimap2/lib/simde/test/x86/sse4.1.c +0 -3446
  92. data/ext/minimap2/lib/simde/test/x86/sse4.2.c +0 -101
  93. data/ext/minimap2/lib/simde/test/x86/ssse3.c +0 -2084
  94. data/ext/minimap2/lib/simde/test/x86/svml.c +0 -1545
  95. data/ext/minimap2/lib/simde/test/x86/test-avx.h +0 -16
  96. data/ext/minimap2/lib/simde/test/x86/test-avx512.h +0 -25
  97. data/ext/minimap2/lib/simde/test/x86/test-mmx.h +0 -13
  98. data/ext/minimap2/lib/simde/test/x86/test-sse.h +0 -13
  99. data/ext/minimap2/lib/simde/test/x86/test-sse2.h +0 -13
  100. data/ext/minimap2/lib/simde/test/x86/test-x86-internal.h +0 -196
  101. data/ext/minimap2/lib/simde/test/x86/test-x86.c +0 -48
  102. data/ext/minimap2/lib/simde/test/x86/test-x86.h +0 -8

There are too many changes on this page to be displayed.

The amount of changes on this page would crash your brower.

You can still verify the content by downloading the gem file manually.