miga-base 1.0.5.4 → 1.0.5.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/miga/version.rb +1 -1
- data/utils/requirements.txt +7 -7
- metadata +1 -1
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 60c02b77c4b06c76c050a87a0506334a469f95684c4032a0d1a4e8bc69fec387
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4
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data.tar.gz: 2464be0080e24e5c61067f6810dabd78f09ca0a7f13dafa1e049dd7b7d531233
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 7a6e6e46fe291be06d7f9a2b91904b76170b7251861630227bbbbdf17c24a8cc3fa3b97bab83aaa98a2c46d994ddfc6707cc922e3f18b17424d254f09773c76b
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7
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data.tar.gz: f8f6fa75ff6f58562f9869122e43de7fa091925cfab4e2606011b1afa2fee0439f64ef87188ba55d62f0e98e4afc5c727b85b053aa2424cbe602cb4bdda1cc04
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data/lib/miga/version.rb
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@@ -12,7 +12,7 @@ module MiGA
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# - String indicating release status:
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# - rc* release candidate, not released as gem
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# - [0-9]+ stable release, released as gem
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VERSION = [1.0, 5,
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VERSION = [1.0, 5, 5].freeze
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##
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# Nickname for the current major.minor version.
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data/utils/requirements.txt
CHANGED
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@@ -1,12 +1,12 @@
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Software Test exec Website
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-------- --------- -------
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Ruby ruby https://www.ruby-lang.org/
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Python python3 https://www.python.org/
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Software Test exec Website Notes
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-------- --------- ------- -----
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Ruby ruby https://www.ruby-lang.org/ Required version: 2.3+
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Python python3 https://www.python.org/ Required version: 3+
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R R http://www.r-project.org/
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SQLite3 sqlite3 https://www.sqlite.org/
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NCBI BLAST+ blastp ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST
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DIAMOND diamond http://ab.inf.uni-tuebingen.de/software/diamond
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FastANI fastANI https://github.com/ParBLiSS/FastANI
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DIAMOND diamond http://ab.inf.uni-tuebingen.de/software/diamond Required version: v0.9.20+
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FastANI fastANI https://github.com/ParBLiSS/FastANI Required version: 1.1+
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HMMer 3.0+ hmmsearch http://hmmer.janelia.org/software
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Bedtools bedtools http://bedtools.readthedocs.org/en/latest/
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Prodigal prodigal http://prodigal.ornl.gov
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@@ -17,6 +17,6 @@ FaQCs (reads) FaQCs https://github.com/LANL-Bioinformatics/FaQCs
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Falco (reads) falco https://github.com/smithlabcode/falco
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Seqtk (reads) seqtk https://github.com/lh3/seqtk
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Fastp (reads) fastp https://github.com/OpenGene/fastp
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-
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Temurin (rdp) java https://adoptium.net/ Any Java VM would work
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MyTaxa (mytaxa) MyTaxa http://enve-omics.ce.gatech.edu/mytaxa
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Krona (mytaxa) ktImportText https://github.com/marbl/Krona/wiki
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