miga-base 1.0.5.4 → 1.0.5.5
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- checksums.yaml +4 -4
- data/lib/miga/version.rb +1 -1
- data/utils/requirements.txt +7 -7
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 60c02b77c4b06c76c050a87a0506334a469f95684c4032a0d1a4e8bc69fec387
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4
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+
data.tar.gz: 2464be0080e24e5c61067f6810dabd78f09ca0a7f13dafa1e049dd7b7d531233
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5
5
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SHA512:
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6
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-
metadata.gz:
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|
7
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-
data.tar.gz:
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6
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+
metadata.gz: 7a6e6e46fe291be06d7f9a2b91904b76170b7251861630227bbbbdf17c24a8cc3fa3b97bab83aaa98a2c46d994ddfc6707cc922e3f18b17424d254f09773c76b
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|
7
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+
data.tar.gz: f8f6fa75ff6f58562f9869122e43de7fa091925cfab4e2606011b1afa2fee0439f64ef87188ba55d62f0e98e4afc5c727b85b053aa2424cbe602cb4bdda1cc04
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data/lib/miga/version.rb
CHANGED
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@@ -12,7 +12,7 @@ module MiGA
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12
12
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# - String indicating release status:
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13
13
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# - rc* release candidate, not released as gem
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14
14
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# - [0-9]+ stable release, released as gem
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15
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-
VERSION = [1.0, 5,
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15
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+
VERSION = [1.0, 5, 5].freeze
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16
16
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17
17
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##
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18
18
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# Nickname for the current major.minor version.
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data/utils/requirements.txt
CHANGED
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@@ -1,12 +1,12 @@
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1
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-
Software Test exec Website
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2
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-
-------- --------- -------
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3
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-
Ruby ruby https://www.ruby-lang.org/
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4
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-
Python python3 https://www.python.org/
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1
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+
Software Test exec Website Notes
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|
2
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+
-------- --------- ------- -----
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3
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+
Ruby ruby https://www.ruby-lang.org/ Required version: 2.3+
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4
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+
Python python3 https://www.python.org/ Required version: 3+
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5
5
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R R http://www.r-project.org/
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6
6
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SQLite3 sqlite3 https://www.sqlite.org/
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7
7
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NCBI BLAST+ blastp ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST
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|
8
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-
DIAMOND diamond http://ab.inf.uni-tuebingen.de/software/diamond
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|
9
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-
FastANI fastANI https://github.com/ParBLiSS/FastANI
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|
8
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+
DIAMOND diamond http://ab.inf.uni-tuebingen.de/software/diamond Required version: v0.9.20+
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9
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+
FastANI fastANI https://github.com/ParBLiSS/FastANI Required version: 1.1+
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10
10
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HMMer 3.0+ hmmsearch http://hmmer.janelia.org/software
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|
11
11
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Bedtools bedtools http://bedtools.readthedocs.org/en/latest/
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|
12
12
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Prodigal prodigal http://prodigal.ornl.gov
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@@ -17,6 +17,6 @@ FaQCs (reads) FaQCs https://github.com/LANL-Bioinformatics/FaQCs
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17
17
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Falco (reads) falco https://github.com/smithlabcode/falco
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18
18
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Seqtk (reads) seqtk https://github.com/lh3/seqtk
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19
19
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Fastp (reads) fastp https://github.com/OpenGene/fastp
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|
20
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-
|
|
20
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+
Temurin (rdp) java https://adoptium.net/ Any Java VM would work
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21
21
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MyTaxa (mytaxa) MyTaxa http://enve-omics.ce.gatech.edu/mytaxa
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22
22
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Krona (mytaxa) ktImportText https://github.com/marbl/Krona/wiki
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