miga-base 1.4.1.2 → 1.4.1.4

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checksums.yaml CHANGED
@@ -1,7 +1,7 @@
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@@ -107,10 +107,9 @@ module MiGA::Cli::Action::Init::DaemonHelper
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  v[:cmd] = cli.ask_user(
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  "How should I launch tasks?\n" \
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  " {{variables}}: script, vars, cpus, log, task_name, miga\n ",
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- "{{vars}} sbatch --partition='#{queue}' --export=ALL " \
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+ "{{vars}} sbatch --parsable --partition='#{queue}' --export=ALL " \
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  "--nodes=1 --ntasks-per-node={{cpus}} --output='{{log}}' " \
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- "--job-name='{{task_name}}' --mem=9G --time=12:00:00 {{script}} " \
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- "| perl -pe 's/.* //'"
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+ "--job-name='{{task_name}}' --mem=9G --time=12:00:00 {{script}}"
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  )
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  v[:var] = cli.ask_user(
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  "How should I pass variables?\n" \
data/lib/miga/version.rb CHANGED
@@ -12,7 +12,7 @@ module MiGA
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  # - String indicating release status:
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  # - rc* release candidate, not released as gem
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  # - [0-9]+ stable release, released as gem
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- VERSION = [1.4, 1, 2].freeze
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+ VERSION = [1.4, 1, 4].freeze
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  ##
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  # Nickname for the current major.minor version.
@@ -87,7 +87,7 @@ fi
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  CMD="$CMD $TYPE_OPT"
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  echo "$CMD"
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  $CMD || true
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- [[ -s "$DATASET/contigs.fa" ]] || exit 1
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+ [[ -s "$DATASET/contigs.fasta" ]] || exit 1
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  # Clean
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  KEEP_GR=$(miga option -P "$PROJECT" -D "$DATASET" -k keep_assembly_graphs)
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: miga-base
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  version: !ruby/object:Gem::Version
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- version: 1.4.1.2
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+ version: 1.4.1.4
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  platform: ruby
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  authors:
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  - Luis M. Rodriguez-R