miga-base 1.3.9.5 → 1.3.9.7

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: b2f7ce1299d3d30cc002c12d05cbb80ecd0ed3e542ea741a97ea6586050507bb
-  data.tar.gz: 264c50bd0ce1c8e63aacc9bcf77fd5c3965b0640cfe5e666c7fe669b50c3e7c1
+  metadata.gz: 39f349118de256f22be42c19f16576b65e9f6836b54e2cab6cd999b93ffa19b6
+  data.tar.gz: 2e44d103abb4156239e98a56287d7ce198c6277dc9eab25c4ed0921831112048
 SHA512:
-  metadata.gz: fabf0a936099b9f80ccd1e15babac2ab2c809173af73aa3f13a95df998a79ddd763d5e57161545d519e36f41d84b0aa3645198d6282139d473391189e3e31a48
-  data.tar.gz: 6bf137db6a855c719aa8597bed4eabfc9beab7432482d9623dddc0024197241b8e2f5ae9c0653325e12450b8dc8477f43851cb70807c0d1e1aa4f98291075b09
+  metadata.gz: 6eba0f2cc60647f500f4f9d0c237e88b69de370c8fb95f481a36e85d3967993396a32361f88050b56719413bf0c850e9252275a85b8b067283f19bb38c959d1f
+  data.tar.gz: 37407d26955546c95d9f6eb95b841273a7cb08c6a78d04aa4174d902cc2eaced33749a6d4b0a74b4462e715ce6986799e961c20708f7c8796977a324b2d1a687

data/lib/miga/cli/action/download/ncbi.rb

@@ -79,7 +79,7 @@ module MiGA::Cli::Action::Download::Ncbi
 
     if cli[:ncbi_list_json]
       cli.say "Saving remote list: #{cli[:ncbi_list_json]}"
-      MiGA::Json.generate_plain(list, cli[:ncbi_list_json])
+      MiGA::Json.generate_fast(list, cli[:ncbi_list_json])
     end
 
     list

data/lib/miga/dataset.rb

@@ -53,9 +53,11 @@ class MiGA::Dataset < MiGA::MiGA
   # be treated as reference (true, default) or query (false). Pass any
   # additional +metadata+ as a Hash.
   def initialize(project, name, is_ref = true, metadata = {})
+    name = name.to_s
     name.miga_name? or
       raise 'Invalid name, please use only alphanumerics and underscores: ' +
-            name.to_s
+            name
+
     @project, @name, @metadata = project, name, nil
     metadata[:ref] = is_ref
     metadata[:type] ||= :empty

data/lib/miga/json.rb

@@ -75,6 +75,13 @@ class MiGA::Json < MiGA::MiGA
       generate_generic(:generate, obj, path)
     end
 
+    ##
+    # Generates and returns plain JSON to represent +obj+ without checking for
+    # circular references. If +path+ is passed, it saves the JSON in that file.
+    def generate_fast(obj, path = nil)
+      generate_generic(:fast_generate, obj, path)
+    end
+
     private
 
     def generate_generic(method, obj, path)

data/lib/miga/project/dataset.rb

@@ -26,7 +26,7 @@ module MiGA::Project::Dataset
   ##
   # Returns MiGA::Dataset
   def dataset(name)
-    name = name.miga_name
+    name = name.to_s.miga_name
     return nil unless MiGA::Dataset.exist?(self, name)
 
     @datasets ||= {}

data/lib/miga/version.rb

@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.3, 9, 5].freeze
+  VERSION = [1.3, 9, 7].freeze
 
   ##
   # Nickname for the current major.minor version.
@@ -20,7 +20,7 @@ module MiGA
 
   ##
   # Date of the current gem relese.
-  VERSION_DATE = Date.new(2024, 1, 23)
+  VERSION_DATE = Date.new(2024, 1, 29)
 
   ##
   # References of MiGA

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: miga-base
 version: !ruby/object:Gem::Version
-  version: 1.3.9.5
+  version: 1.3.9.7
 platform: ruby
 authors:
 - Luis M. Rodriguez-R
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2024-01-23 00:00:00.000000000 Z
+date: 2024-01-29 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: daemons