miga-base 1.3.21.1 → 1.3.21.3

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 922c48fb762203b174d2bd7448590c1d30a5ce1d14ef877e55f625b57acfb274
-  data.tar.gz: edee96be95f283d4bf017e6221ebb73951eb77a9a9041eb957a54ebbf6e517f1
+  metadata.gz: 94519dd1a0689d8a5c1b3c878394827a14ea1db4fa373078312c5db3fbf711b2
+  data.tar.gz: 59bd5e8151b87102544c44263422cf856405f53b2bbd224dc036beb0853d831a
 SHA512:
-  metadata.gz: 972dd057f0344ca7131fb166333959ecc7352a3aa7672e0a73e07b730a2a5d8003bcc3b1f23644c2a2bdec5ae01f1aa512bf37fcc9448d6612fc5f9205af7fae
-  data.tar.gz: e3ff7e91bdc10d0e989d1409d54af3eba821f33c5104e7f1c4ee1ac60b3e30e4b0c2d03170822e94a10063c5a7e648d7b989fb3a8a26e73646dab65a6cabd68b
+  metadata.gz: 362f537d825f8cce8ef8413df35b5276abdccd189f6934b57e35f7c62017d552de6759e55dd1d55d0ef6d5f483a6412626c5e9092bf23122df32772ca48c181c
+  data.tar.gz: 2ab7d106c091d87da87631bfe2f73838f76c2a8355b28269dfa70656bc8ec39958d92b758fdc28c7fe02650a86e1e7d159d7286e4e113f155e16c4e8343bf31d

data/lib/miga/cli/action/lair.rb

@@ -16,6 +16,7 @@ class MiGA::Cli::Action::Lair < MiGA::Cli::Action
         run: 'Start the application and stay on top',
         status: 'Show status (PID) of application instances',
         list: 'List all daemons and their status',
+        running: 'List running daemons only',
         terminate: 'Terminate all daemons in the lair and exit'
       }.each { |k, v| opt.separator sprintf('    %*s%s', -33, k, v) }
       opt.separator ''
@@ -93,12 +94,17 @@ class MiGA::Cli::Action::Lair < MiGA::Cli::Action
     case cli.operation.to_sym
     when :terminate
       lair.terminate_daemons
-    when :list
+    when :list, :running
       o = []
       lair.each_daemon do |d|
         o << [d.daemon_name, d.class, d.daemon_home, d.active?, d.last_alive]
       end
-      cli.table(%w[name class path active last_alive], o)
+      if cli.operation.to_sym == :running
+        o.select! { |i| i[3] }.map! { |i| i[0..-3] }
+        cli.table(%w[name class path], o)
+      else
+        cli.table(%w[name class path active last_alive], o)
+      end
     else
       lair.daemon(cli.operation, cli[:daemon_opts])
     end

data/lib/miga/version.rb

@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.3, 21, 1].freeze
+  VERSION = [1.3, 21, 3].freeze
 
   ##
   # Nickname for the current major.minor version.

data/scripts/ssu.bash

@@ -78,8 +78,10 @@ $(
     bedtools --version 2>&1 | perl -pe 's/^bedtools //'
     echo "=> Enveomics Collection"
     echo "version unknown"
-    echo "=> RDP Naive Bayes Classifier"
-    gzip -cd "${DATASET}.rdp.tsv.gz" | tail -n 1 | perl -pe 's/.*: //'
+    if [[ -e "${DATASET}.rdp.tsv.gz" ]] ; then
+      echo "=> RDP Naive Bayes Classifier"
+      gzip -cd "${DATASET}.rdp.tsv.gz" | tail -n 1 | perl -pe 's/.*: //'
+    fi
     echo "=> tRNAscan-SE"
     tRNAscan-SE -h 2>&1 | head -n 2 | tail -n 1 | perl -pe 's/^tRNAscan-SE //'
   fi

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: miga-base
 version: !ruby/object:Gem::Version
-  version: 1.3.21.1
+  version: 1.3.21.3
 platform: ruby
 authors:
 - Luis M. Rodriguez-R