miga-base 1.3.20.3 → 1.3.20.5

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: c6cd171c44ec3139121607db27badddcd12e8cefd45f49acc6bc5f018184943f
-  data.tar.gz: 8ca59c51be7224fb7e0d3b0561cb72ef9f95594a2b51fa9a3c04c65ab60d7b66
+  metadata.gz: 17c8c736e04eeaea0e7247e7a5134a0902f4e2ed4c749d68e00b00aeeb7e7295
+  data.tar.gz: 93cca0af126920c07740be2a4f203d36f3632722022c5e09eda5d326469c31bc
 SHA512:
-  metadata.gz: 281aa0434dbeb5d4d5c69e5df44a459e77d22ce1664c68553fe61c04640ec27128002428aaffca3f1913973d2cb689afba51e683f7e3ca594bfede38b1ad79be
-  data.tar.gz: 2f37a8bc9fd5e516a669185b56e71339fca60314d7505917e1c4d4291801c81f4d9a3a36988e63bf0e0829d63046b3dc1b34c072a893449df2b63aa849cb1a05
+  metadata.gz: af8314535751804f3870767b4c0d88c5c139a3ae94e03c92317935397c5ee20a88e49ad97addcbf4be6e47947ee659a919db4ab1d60b48f86c5eda627fb3dba4
+  data.tar.gz: 65e3cdc46e3cf3d4f094b0dd6bfa93806ede628573eede6f893450720d76a8c5d69528c4b63cb6839861438014d6801297d0c8a70c0d4f841a79118d54aab2cf

data/lib/miga/cli/action/doctor/distances.rb

@@ -77,8 +77,15 @@ module MiGA::Cli::Action::Doctor::Distances
   def partial_bidir_tmp(project, ref_ds)
     n = ref_ds.size
 
-    # Read data first (threaded)
+    # Check first if a previous run is complete (and recover it)
     tmp = File.join(project.path, 'doctor-bidirectional.tmp')
+    tmp_done = File.join(tmp, 'done.txt')
+    if File.size?(tmp_done) &&
+          File.readlines(tmp_done)[0].chomp.to_i == cli[:threads]
+      return tmp
+    end
+
+    # Read data first (threaded)
     FileUtils.mkdir_p(tmp)
     MiGA::Parallel.process(cli[:threads]) do |thr|
       file = File.join(tmp, "#{thr}.json")
@@ -102,6 +109,8 @@ module MiGA::Cli::Action::Doctor::Distances
       end
     end
 
+    # Save information to indicate that the run is complete and return
+    File.open(tmp_done, 'w') { |fh| fh.puts cli[:threads] }
     return tmp
   end
 
@@ -113,7 +122,14 @@ module MiGA::Cli::Action::Doctor::Distances
     dist = { aai: {}, ani: {} }
     cli[:threads].times do |i|
       cli.advance('Merging:', i + 1, cli[:threads], false)
+
+      next if File.size?(File.join(tmp, "#{i+1}.json.marshal"))
       file = File.join(tmp, "#{i}.json")
+      if File.size?("#{file}.marshal")
+        dist = Marshal.load(File.read("#{file}.marshal"))
+        next
+      end
+
       File.open(file, 'r') do |fh|
         metric = nil
         fh.each do |ln|
@@ -135,6 +151,8 @@ module MiGA::Cli::Action::Doctor::Distances
         end
         raise "Incomplete thread dump: #{file}" unless metric == :end
       end
+      File.open("#{file}.marshal.tmp", 'w') { |fh| Marshal.dump(dist, fh) }
+      File.rename("#{file}.marshal.tmp", "#{file}.marshal")
     end
     cli.say
 

data/lib/miga/version.rb

@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.3, 20, 3].freeze
+  VERSION = [1.3, 20, 5].freeze
 
   ##
   # Nickname for the current major.minor version.
@@ -20,7 +20,7 @@ module MiGA
 
   ##
   # Date of the current gem relese.
-  VERSION_DATE = Date.new(2024, 8, 29)
+  VERSION_DATE = Date.new(2024, 9, 1)
 
   ##
   # References of MiGA

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: miga-base
 version: !ruby/object:Gem::Version
-  version: 1.3.20.3
+  version: 1.3.20.5
 platform: ruby
 authors:
 - Luis M. Rodriguez-R
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2024-08-29 00:00:00.000000000 Z
+date: 2024-09-01 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: daemons