miga-base 1.3.20.1 → 1.3.20.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/miga/version.rb +2 -2
- data/scripts/cds.bash +5 -1
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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SHA256:
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-
metadata.gz:
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-
data.tar.gz:
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3
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metadata.gz: 0ed682917cf2e5645f7ae31789932c2d14eaf06faa29aca1b13142862f653d49
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4
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data.tar.gz: fce8e42084a3896c49a01ce603d0c99ac766b1bade878b43ac55fd5be11ba523
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SHA512:
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-
metadata.gz:
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7
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data.tar.gz:
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6
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metadata.gz: 1eacee695bac46bbed8c1bb13694c2ff614020eef89d8547939a6d976f21659464185d648ff2244f25e5ddba2ae429a1d87758034eefa48ce84e8636f072c686
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7
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data.tar.gz: 04fb36c2c58b9fde72e48f9a9983a3505f6368ac231e412c7844380fa4a497dcd71d3209c09b97d961f393b6b3c9965092e72620b88d226fa4275a3a8993db0d
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data/lib/miga/version.rb
CHANGED
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@@ -12,7 +12,7 @@ module MiGA
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# - String indicating release status:
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# - rc* release candidate, not released as gem
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# - [0-9]+ stable release, released as gem
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-
VERSION = [1.3, 20,
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VERSION = [1.3, 20, 2].freeze
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##
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# Nickname for the current major.minor version.
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@@ -20,7 +20,7 @@ module MiGA
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##
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# Date of the current gem relese.
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-
VERSION_DATE = Date.new(2024,
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+
VERSION_DATE = Date.new(2024, 8, 29)
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##
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# References of MiGA
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data/scripts/cds.bash
CHANGED
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@@ -26,10 +26,14 @@ case "$TYPE" in
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*)
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P_LEN=0
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BEST_CT=0
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PROCEDURE=single
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ASM_LEN=$(grep -v '^>' "../05.assembly/${DATASET}.LargeContigs.fna" \
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| wc -lc | awk '{ print $2-$1 }')
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[[ "$ASM_LEN" -lt 2000 ]] && PROCEDURE=meta
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echo "# Codon table selection:" > "${DATASET}.ct.t"
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for ct in 11 4 ; do
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prodigal -a "${DATASET}.faa.$ct" -d "${DATASET}.fna.$ct" \
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-
-o "${DATASET}.gff3.$ct" -f gff -q -p
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-o "${DATASET}.gff3.$ct" -f gff -q -p $PROCEDURE -g "$ct" \
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-i "../05.assembly/${DATASET}.LargeContigs.fna"
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C_LEN=$(grep -v '^>' "${DATASET}.faa.$ct" \
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| perl -pe 's/[^A-Z]//ig' | wc -c | awk '{print $1}')
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
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--- !ruby/object:Gem::Specification
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name: miga-base
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version: !ruby/object:Gem::Version
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version: 1.3.20.
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version: 1.3.20.2
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platform: ruby
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authors:
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- Luis M. Rodriguez-R
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2024-
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date: 2024-08-29 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: daemons
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