miga-base 1.3.2.0 → 1.3.3.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/miga/cli/action/classify_wf.rb +1 -1
- data/lib/miga/project/base.rb +1 -1
- data/lib/miga/project.rb +15 -0
- data/lib/miga/version.rb +2 -2
- metadata +2 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
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---
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: bbde5de18171f236e86625c6220a26243a66540fd27194c29541be12c1d89682
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4
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data.tar.gz: 99a9d4aabfb239cc456e1d118809e5f843c0908f1a395457d8f97af82732d621
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5
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SHA512:
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-
metadata.gz:
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7
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-
data.tar.gz:
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metadata.gz: 6efbbc1082e92dee7611a7b42d573012a652a84343cb0778081bc2c2ed5aeb81089d2fadecbe3dd8f88538187a6d57fb57ad6b7ee0822c0e2b986ad261768b1c
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7
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data.tar.gz: d524db7505c561128605a3773a384482383addee341d5769acd053f88721e4160ebc1c5f25fcf4ab55d435a42ef9a29c78bcefb419b8e09d81b4765b95dfa0c8
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@@ -10,7 +10,7 @@ class MiGA::Cli::Action::ClassifyWf < MiGA::Cli::Action
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def parse_cli
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default_opts_for_wf
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cli.defaults = {
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-
download: false, summaries: true, pvalue: 0.
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+
download: false, summaries: true, pvalue: 0.1,
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local: File.expand_path('.miga_db', ENV['MIGA_HOME'])
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}
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cli.parse do |opt|
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data/lib/miga/project/base.rb
CHANGED
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@@ -126,7 +126,7 @@ module MiGA::Project::Base
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desc: 'Directory containing database projects', type: String
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},
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tax_pvalue: {
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desc: 'Maximum p-value to transfer taxonomy', default: 0.
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desc: 'Maximum p-value to transfer taxonomy', default: 0.1, type: Float,
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in: 0.0..1.0
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},
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haai_p: {
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data/lib/miga/project.rb
CHANGED
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@@ -128,4 +128,19 @@ class MiGA::Project < MiGA::MiGA
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require 'miga/daemon'
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@daemon ||= MiGA::Daemon.new(self)
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end
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+
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+
##
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# Retrieves the option with name +key+ from the project's metadata,
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# extending support to relative paths in +:ref_project+ and
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# +:db_proj_dir+
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def option_by_metadata(key)
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case key.to_sym
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when :ref_project, :db_proj_dir
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y = metadata[key]
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y = File.expand_path(y, path) if y && y =~ /^[^\/]/
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return y
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end
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+
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super
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end
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end
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data/lib/miga/version.rb
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@@ -12,7 +12,7 @@ module MiGA
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# - String indicating release status:
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# - rc* release candidate, not released as gem
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# - [0-9]+ stable release, released as gem
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VERSION = [1.3,
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VERSION = [1.3, 3, 1].freeze
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##
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# Nickname for the current major.minor version.
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@@ -20,7 +20,7 @@ module MiGA
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##
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# Date of the current gem relese.
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-
VERSION_DATE = Date.new(2023, 3,
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VERSION_DATE = Date.new(2023, 3, 29)
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##
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# References of MiGA
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metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
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--- !ruby/object:Gem::Specification
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name: miga-base
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version: !ruby/object:Gem::Version
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version: 1.3.
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version: 1.3.3.1
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platform: ruby
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authors:
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- Luis M. Rodriguez-R
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autorequire:
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bindir: bin
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cert_chain: []
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date: 2023-03-
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date: 2023-03-29 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: daemons
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