miga-base 1.3.15.5 → 1.3.15.6

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checksums.yaml CHANGED
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data/lib/miga/version.rb CHANGED
@@ -12,7 +12,7 @@ module MiGA
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  # - String indicating release status:
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  # - rc* release candidate, not released as gem
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  # - [0-9]+ stable release, released as gem
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- VERSION = [1.3, 15, 5].freeze
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+ VERSION = [1.3, 15, 6].freeze
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  ##
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  # Nickname for the current major.minor version.
data/utils/subclades.R CHANGED
@@ -147,7 +147,7 @@ subclade_clustering <- function (out_base, thr, ani.d, dist_rds) {
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  # Classify genomes
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  say("Classify => k :", top.n, "| n :", length(labels(ani.d)))
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- is.large <- nn > 3e4
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+ is.large <- nn > 1e4
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  ani.cl <- pam(ani.d, top.n, variant = "faster", do.swap = !is.large)
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  ani.types <- ani.cl$clustering
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  ani.medoids <- ani.cl$medoids
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: miga-base
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  version: !ruby/object:Gem::Version
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- version: 1.3.15.5
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+ version: 1.3.15.6
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  platform: ruby
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  authors:
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  - Luis M. Rodriguez-R