miga-base 1.3.15.4 → 1.3.15.6
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- checksums.yaml +4 -4
- data/lib/miga/version.rb +1 -1
- data/scripts/trimmed_reads.bash +1 -1
- data/utils/subclades.R +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: 8916ac865e1757da585e0733f702774651ebd14904945d8f92328a2c78776e7f
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4
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+
data.tar.gz: 016f4ba658e387607f79bc131ae4d34a362cc6b4d2be1a91314fdbdf67099513
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 8dbb5768f3af98c8f69b7a8e6bbcca27044353bfc1437972927c5a67a2aa28d8a94c870875571b2361b3912f6ef3bdf495346b231607e4f51fb1f53b11116f91
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|
7
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+
data.tar.gz: 84b1efa30ab43926a3ab651ffe4f33822b661b165b9a284f3f9b7320e1614f7496be1052534a004115cee52e96bac34a86c189b81fe075bd789ce407c20fead4
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data/lib/miga/version.rb
CHANGED
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@@ -12,7 +12,7 @@ module MiGA
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12
12
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# - String indicating release status:
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13
13
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# - rc* release candidate, not released as gem
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14
14
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# - [0-9]+ stable release, released as gem
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15
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-
VERSION = [1.3, 15,
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15
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+
VERSION = [1.3, 15, 6].freeze
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16
16
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17
17
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##
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18
18
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# Nickname for the current major.minor version.
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data/scripts/trimmed_reads.bash
CHANGED
data/utils/subclades.R
CHANGED
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@@ -147,7 +147,7 @@ subclade_clustering <- function (out_base, thr, ani.d, dist_rds) {
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147
147
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148
148
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# Classify genomes
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149
149
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say("Classify => k :", top.n, "| n :", length(labels(ani.d)))
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150
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-
is.large <- nn >
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150
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+
is.large <- nn > 1e4
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151
151
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ani.cl <- pam(ani.d, top.n, variant = "faster", do.swap = !is.large)
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152
152
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ani.types <- ani.cl$clustering
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153
153
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ani.medoids <- ani.cl$medoids
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