miga-base 1.3.15.2 → 1.3.15.3
Sign up to get free protection for your applications and to get access to all the features.
- checksums.yaml +4 -4
- data/lib/miga/version.rb +1 -1
- data/scripts/miga.bash +1 -1
- data/scripts/trimmed_reads.bash +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
---
|
|
2
2
|
SHA256:
|
|
3
|
-
metadata.gz:
|
|
4
|
-
data.tar.gz:
|
|
3
|
+
metadata.gz: fc7061e7db5ea3abbd360cbb333a80200c7c4ee3ab9f12f9c13e3c780c5d6137
|
|
4
|
+
data.tar.gz: 3e72007cc93f82eab23bc4663dc0fdf4f609ee1ab5dee2661c7d076e56da07bf
|
|
5
5
|
SHA512:
|
|
6
|
-
metadata.gz:
|
|
7
|
-
data.tar.gz:
|
|
6
|
+
metadata.gz: 126fe24613362de8ea56e457294d87846ed6155402f853c12eee7a64ba55a0108fa79f4de52b3fe9a46cf3ede18893ad170fb63189637c12a3074dde107488cf
|
|
7
|
+
data.tar.gz: 411aeb6de107190ac6d7b1024cf4fd77996ad7f9be2127dec54a12dd6fac9f1659e606e901a2b7a5cc1a0f62363426b23c817beeef3ae77a92f1643532e7b44d
|
data/lib/miga/version.rb
CHANGED
|
@@ -12,7 +12,7 @@ module MiGA
|
|
|
12
12
|
# - String indicating release status:
|
|
13
13
|
# - rc* release candidate, not released as gem
|
|
14
14
|
# - [0-9]+ stable release, released as gem
|
|
15
|
-
VERSION = [1.3, 15,
|
|
15
|
+
VERSION = [1.3, 15, 3].freeze
|
|
16
16
|
|
|
17
17
|
##
|
|
18
18
|
# Nickname for the current major.minor version.
|
data/scripts/miga.bash
CHANGED
|
@@ -16,7 +16,7 @@ function exists { [[ -e "$1" ]] ; }
|
|
|
16
16
|
function fx_exists { [[ $(type -t "$1") == "function" ]] ; }
|
|
17
17
|
|
|
18
18
|
# Override gzip with pigz (if available)
|
|
19
|
-
if
|
|
19
|
+
if command -v pigz &>/dev/null ; then
|
|
20
20
|
function gzip { pigz -p ${CORES:-2} "$@" ; }
|
|
21
21
|
fi
|
|
22
22
|
|
data/scripts/trimmed_reads.bash
CHANGED
|
@@ -31,7 +31,7 @@ FastQ.tag.rb -i "$in1" -p "$b-" -s "/1" -o "$b.1.fastq.gz"
|
|
|
31
31
|
|
|
32
32
|
# Multitrim
|
|
33
33
|
CMD="multitrim.py --level 9 --threads $CORES -o $b"
|
|
34
|
-
|
|
34
|
+
command -v pigz &>/dev/null && CMD="$CMD --zip pigz"
|
|
35
35
|
if [[ -s "$b.2.fastq.gz" ]] ; then
|
|
36
36
|
# Paired
|
|
37
37
|
$CMD -1 "$b.1.fastq.gz" -2 "$b.2.fastq.gz"
|