miga-base 1.3.14.6 → 1.3.15.0

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@@ -32,8 +32,8 @@ module MiGA::Cli::Action::Download::Seqcode
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  :seqcode, :'type-genomes', nil, :json, nil, page: current_page
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  )
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  doc = MiGA::Json.parse(json, contents: true)
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- current_page = doc[:current_page] + 1
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- total_pages = doc[:total_pages]
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+ current_page = doc.dig(:response, :current_page) + 1
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+ total_pages = doc.dig(:response, :total_pages)
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  doc[:values].each do |name|
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  next unless name[:type_material]
@@ -22,7 +22,7 @@ module MiGA::RemoteDataset::Base
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  @@_EUTILS = 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/'
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  @@_EBI_API = 'https://www.ebi.ac.uk/Tools/'
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  @@_GTDB_API = 'https://gtdb-api.ecogenomic.org/'
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- @@_SEQCODE_API = 'https://disc-genomics.uibk.ac.at/seqcode/'
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+ @@_SEQCODE_API = 'https://api.seqco.de/v1/'
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  @@_EUTILS_BUILD = lambda { |service, q|
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  q[:api_key] = ENV['NCBI_API_KEY'] if ENV['NCBI_API_KEY']
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  uri_safe_join(@@_EUTILS, "#{service}.fcgi")
data/lib/miga/version.rb CHANGED
@@ -12,7 +12,7 @@ module MiGA
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  # - String indicating release status:
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  # - rc* release candidate, not released as gem
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  # - [0-9]+ stable release, released as gem
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- VERSION = [1.3, 14, 6].freeze
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+ VERSION = [1.3, 15, 0].freeze
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  ##
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  # Nickname for the current major.minor version.
@@ -20,7 +20,7 @@ module MiGA
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  ##
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  # Date of the current gem relese.
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- VERSION_DATE = Date.new(2024, 4, 15)
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+ VERSION_DATE = Date.new(2024, 5, 2)
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  ##
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  # References of MiGA
@@ -34,7 +34,7 @@ rm "miga-project.txt.lno"
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  # R-ify
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  cat <<R | R --vanilla
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  file <- gzfile("miga-project.txt.gz")
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- text <- readLines(file, n = $LNO + 1, ok = FALSE)
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+ text <- readLines(file, n = $LNO + 1, ok = FALSE)[-1]
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  a <- vector("character", $LNO)
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  b <- vector("character", $LNO)
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  d <- vector("numeric", $LNO)
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
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  name: miga-base
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  version: !ruby/object:Gem::Version
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- version: 1.3.14.6
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+ version: 1.3.15.0
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  platform: ruby
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  authors:
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  - Luis M. Rodriguez-R
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2024-04-15 00:00:00.000000000 Z
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+ date: 2024-05-02 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: daemons