miga-base 1.3.14.1 → 1.3.14.3

checksums.yaml

@@ -1,7 +1,7 @@
 ---
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-  data.tar.gz: 1590b03b5dfbe42241dd943a61388ff2e22a4956c6e9169d321a9bb857b9713f
+  metadata.gz: ad1cde77838f069107b11a871b01a52062f508aa7770210da8ddec458b8b8064
+  data.tar.gz: 2b15d46aeadfbc73f972c232b0609015e4dcfc72d5aae03bea09f44fe8e8bf5b
 SHA512:
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-  data.tar.gz: e771646155d87a7f8e7896b5cfa121f94a60dbce78cd5be0231faf42e7f4aa2b75de4c3fdf043dadb33d07a67bca180d12a12871d1066bff73a454eecdf565a5
+  metadata.gz: 1195c71d940b310670a391d2238020dc4efc954ea4f22ea16ef50083da44e632baed6497064ea16ed22b0870f6e874ddc21be0df5caa4c91556cf62e1b54788b
+  data.tar.gz: 40fba95f7f3dda37a917a08611238e39fdc908153ef33d3e8f9872ccebabe85725bbceb90ca0864f5da32b3c51f16cc04e7f6d3f71a1d6475c97eea323905a4e

data/lib/miga/cli/action/find.rb

@@ -37,7 +37,7 @@ class MiGA::Cli::Action::Find < MiGA::Cli::Action
       if cli[:add]
         cli.say "Registering: #{dn}"
         d = Dataset.new(p, dn, cli[:ref])
-        add_metadata(d)
+        cli.add_metadata(d)
         p.add_dataset(dn)
         res = d.first_preprocessing(true)
         cli.say "- #{res}"

data/lib/miga/cli/action/run.rb

@@ -84,7 +84,7 @@ class MiGA::Cli::Action::Run < MiGA::Cli::Action
     cmd << MiGA.script_path(cli[:result], miga: miga, project: p).shellescape
     if cli[:remote]
       cmd = [
-        'ssh', '-t', '-t',
+        'ssh', '-t', '-t', '-o', 'StrictHostKeyChecking off',
         cli[:remote].shellescape,
         cmd.join(' ').shellescape
       ]

data/lib/miga/version.rb

@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.3, 14, 1].freeze
+  VERSION = [1.3, 14, 3].freeze
 
   ##
   # Nickname for the current major.minor version.
@@ -20,7 +20,7 @@ module MiGA
 
   ##
   # Date of the current gem relese.
-  VERSION_DATE = Date.new(2024, 4, 1)
+  VERSION_DATE = Date.new(2024, 4, 13)
 
   ##
   # References of MiGA

data/test/remote_dataset_test.rb

@@ -22,7 +22,10 @@ class RemoteDatasetTest < Test::Unit::TestCase
 
   def test_get
     hiv2 = 'M30502.1'
-    { embl: :ebi, nuccore: :ncbi }.each do |db, universe|
+    # TODO
+    # EMBL Temporarily down, enable back whenever possible!
+    #{ embl: :ebi, nuccore: :ncbi }.each do |db, universe|
+    { nuccore: :ncbi }.each do |db, universe|
       rd = MiGA::RemoteDataset.new(hiv2, db, universe)
       assert_equal([hiv2], rd.ids)
 

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: miga-base
 version: !ruby/object:Gem::Version
-  version: 1.3.14.1
+  version: 1.3.14.3
 platform: ruby
 authors:
 - Luis M. Rodriguez-R
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2024-04-01 00:00:00.000000000 Z
+date: 2024-04-13 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: daemons