miga-base 1.3.13.4 → 1.3.13.6

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: bdf054cb57b5a84d9ffb450b440a4dc6310e8aaf826d9b2160f0eecabce16385
-  data.tar.gz: 237517417fa21ad566df29aa9da67a8307b8b6a3988b0fae16fd4b594d2cc6f8
+  metadata.gz: 86ce0bd3f3cd40ab7c4883d729bf43a1eb18303d034063714dcc0ae7944079c7
+  data.tar.gz: '03957e37bb90e94a63c4a746fbccab48965dc29c614439b19848ffe8f40ee98c'
 SHA512:
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-  data.tar.gz: 923d60bb47caeab98c9b062dc8af575e8dbe2950cf0602e123cfe8e7533ccdb0aaa5034d1bf0006d5e5f418f7004777c08f861a1e2eb9d143a79044ece69a2d3
+  metadata.gz: abe0f5938f5af2686bcc7c4d810c9ce0388e561250f1b4422234ba91e0dae0a7e9bc2b9dcbf8105edfd128d9110f7b72c79a88df1084f86b38cdac23323ba298
+  data.tar.gz: fbff0a7738631a4b8756d2c6ff49520e07903391ca07d4a68a2b8e2ace65e56bd8297a33a5ea8b999a805a552454e4e621af337ca772ee864f851975e471f340

data/lib/miga/cli/action/doctor/base.rb

@@ -37,10 +37,11 @@ module MiGA::Cli::Action::Doctor::Base
     return if fix.empty?
 
     cli.say("- Fixing #{fix.size} datasets")
-    fix.each_with_index do |d_n, k|
-      cli.advance('  > Fixing', k + 1, fix.size, false)
+    MiGA::Parallel.distribute(fix, cli[:threads]) do |d_n, idx, thr|
+      cli.advance('  > Fixing', idx + 1, fix.size, false) if thr == 0
       p.dataset(d_n).cleanup_distances!
     end
+    cli.say
   end
 
   ##

data/lib/miga/json.rb

@@ -1,6 +1,12 @@
 # frozen_string_literal: true
 
 require 'json'
+begin
+  require 'oj'
+  OJ.mimic_JSON()
+rescue LoadError
+  # Do nothing if not available
+end
 
 ##
 # Taxonomic classifications in MiGA.

data/lib/miga/version.rb

@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.3, 13, 4].freeze
+  VERSION = [1.3, 13, 6].freeze
 
   ##
   # Nickname for the current major.minor version.

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: miga-base
 version: !ruby/object:Gem::Version
-  version: 1.3.13.4
+  version: 1.3.13.6
 platform: ruby
 authors:
 - Luis M. Rodriguez-R