miga-base 1.3.12.3 → 1.3.13.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/miga/cli/action/get.rb +9 -0
- data/lib/miga/version.rb +1 -1
- metadata +1 -1
checksums.yaml
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 8659bae6ee7d40a76a464840a56b4aff77f9a848d777349e98d8c316717b0021
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data.tar.gz: dab1cbd8ee24503b4dfbe0e8b034da195120251c258c798bbba92668a52d3cfa
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: '09a916e1db7bb4912111e83c2d832a779a245c8eb326aee3cfcead8611d484f737a1cbcae1a1279a2673a2f31a8252c859b533b7ae9b6c74c8881b41e63e7c40'
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data.tar.gz: 43e7065632d2642abb0c6bb5fac8ae96e0696c0f48b128376fa5d1ac929c1c7b787df61af78bee5a4824049da7b2baf976f9bb3d3f083184ca02deefc166114e
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data/lib/miga/cli/action/get.rb
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@@ -5,6 +5,9 @@ require 'miga/cli/action'
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require 'miga/remote_dataset'
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class MiGA::Cli::Action::Get < MiGA::Cli::Action
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require 'miga/cli/action/download/base'
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include MiGA::Cli::Action::Download::Base
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def parse_cli
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cli.defaults = {
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query: false, universe: :ncbi, db: :nuccore, get_md: false, only_md: false
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@@ -69,12 +72,18 @@ class MiGA::Cli::Action::Get < MiGA::Cli::Action
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'--api-key STRING',
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'API key for the given universe'
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) { |v| cli[:api_key] = v }
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opt.on(
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'--ncbi-taxonomy-dump [path]',
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'Path to an NCBI Taxonomy dump directory to query instead of API calls',
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'If the path is not passed, the dump is automatically downloaded'
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) { |v| cli[:ncbi_taxonomy_dump] = v || true }
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end
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end
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def perform
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glob = get_sub_cli
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p = cli.load_project
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load_ncbi_taxonomy_dump
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glob.each do |sub_cli|
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rd = create_remote_dataset(sub_cli, p)
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next if rd.nil?
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data/lib/miga/version.rb
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@@ -12,7 +12,7 @@ module MiGA
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# - String indicating release status:
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# - rc* release candidate, not released as gem
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# - [0-9]+ stable release, released as gem
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VERSION = [1.3,
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VERSION = [1.3, 13, 0].freeze
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##
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# Nickname for the current major.minor version.
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