miga-base 1.2.2.1 → 1.2.2.2

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@@ -57,6 +57,7 @@ class MiGA::Cli::Action::Add < MiGA::Cli::Action
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  def perform
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  p = cli.load_project
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+ cli.ensure_par(type: '-t')
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  files, file_type = get_files_and_type
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  paired = cli[:input_type].to_s.include?('_paired')
@@ -113,7 +114,7 @@ class MiGA::Cli::Action::Add < MiGA::Cli::Action
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  cli.ensure_type(Dataset)
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  files = [nil]
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  else
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- raise 'Please specify input type (-i).' if cli[:input_type].nil?
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+ cli.ensure_par({ input_type: '-i' }, 'Please specify input type (-i)')
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  file_type = self.class.INPUT_TYPES[cli[:input_type]]
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  raise "Unrecognized input type: #{cli[:input_type]}." if file_type.nil?
data/lib/miga/common.rb CHANGED
@@ -43,9 +43,8 @@ class MiGA::MiGA
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  # +ext+ values (Array of String).
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  def result_files_exist?(base, ext)
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  ext = [ext] unless ext.is_a? Array
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- ext.all? do |f|
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- File.exist?(base + f) or File.exist?("#{base}#{f}.gz")
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- end
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+ MiGA::MiGA.DEBUG("Assserting files for result: #{ext}")
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+ ext.all? { |f| File.exist?(base + f) or File.exist?("#{base}#{f}.gz") }
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  end
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  ##
data/lib/miga/daemon.rb CHANGED
@@ -66,6 +66,12 @@ class MiGA::Daemon < MiGA::MiGA
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  "MiGA:#{project.name}"
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  end
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+ ##
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+ # Alias to +project.path+ for compatibility with lairs
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+ def path
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+ project.path
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+ end
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+
69
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  ##
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  # Run only in the first loop
71
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  def daemon_first_loop
data/lib/miga/version.rb CHANGED
@@ -12,7 +12,7 @@ module MiGA
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12
  # - String indicating release status:
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  # - rc* release candidate, not released as gem
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  # - [0-9]+ stable release, released as gem
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- VERSION = [1.2, 2, 1].freeze
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+ VERSION = [1.2, 2, 2].freeze
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  ##
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  # Nickname for the current major.minor version.
@@ -20,7 +20,7 @@ module MiGA
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21
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  ##
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  # Date of the current gem relese.
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- VERSION_DATE = Date.new(2022, 1, 27)
23
+ VERSION_DATE = Date.new(2022, 2, 2)
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25
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  ##
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  # References of MiGA
metadata CHANGED
@@ -1,14 +1,14 @@
1
1
  --- !ruby/object:Gem::Specification
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2
  name: miga-base
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3
  version: !ruby/object:Gem::Version
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- version: 1.2.2.1
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+ version: 1.2.2.2
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  platform: ruby
6
6
  authors:
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7
  - Luis M. Rodriguez-R
8
8
  autorequire:
9
9
  bindir: bin
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10
  cert_chain: []
11
- date: 2022-01-27 00:00:00.000000000 Z
11
+ date: 2022-02-02 00:00:00.000000000 Z
12
12
  dependencies:
13
13
  - !ruby/object:Gem::Dependency
14
14
  name: daemons