miga-base 1.2.13.2 → 1.2.13.4

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
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-  data.tar.gz: dc3612cbdb962003ec0804b0bc556f30511a69f1a4d945f8b4fb41a7f1c99799
+  metadata.gz: cdb8e809ff19a09d50286683db9d524d203bc0d62ad90d2b760a1244d16cc484
+  data.tar.gz: ca509e431f7c16cf924f895ac37ef33c94ce715460eab42fed0ff5c6c8aca2a8
 SHA512:
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+  metadata.gz: f118bac8e0588fc07666faf74f4c66d0b4f021dde71a6d75092442d09888ce95341cb3b6780a3143a03ea88598e51926965162be3a64717a69a74ed27cf85ef1
+  data.tar.gz: be23d776d61bbad830d5bff139d725a22f2821eb23bc7a61da9c49c4eff89e560a38d4078a0f44c2d6e1185aea7555aeb1a81e50820e4c704ee11b5ed30c4453

data/lib/miga/cli/action/summary.rb

@@ -37,12 +37,16 @@ class MiGA::Cli::Action::Summary < MiGA::Cli::Action
     cli.ensure_par(result: '-r')
     ds = cli.load_and_filter_datasets
     cli.say 'Loading results'
+    k = 0
+    n = ds.size
     stats = ds.map do |d|
+      cli.advance('Datasets:', k += 1, n, false)
       r = d.result(cli[:result])
       r.compute_stats if cli[:compute] && !r.nil? && r[:stats].empty?
       s = r.nil? ? {} : r[:stats]
       s.tap { |i| i[:dataset] = d.name }
     end
+    cli.say ''
     keys = cli[:key_md].nil? ? stats.map(&:keys).flatten.uniq :
       [:dataset, cli[:key_md].downcase.miga_name.to_sym]
     keys.delete :dataset

data/lib/miga/result/stats.rb

@@ -205,7 +205,7 @@ module MiGA::Result::Stats
         stats[:trna_count] += 1
         row = ln.chomp.split("\t")
         next if row[9] == 'pseudo' || row[4] == 'Undet'
-        aa[row[4].gsub(/^f?([A-Za-z]+)[0-9]?/, '\1')] = true
+        aa[row[4].gsub(/^[a-z]?([A-Za-z]+)[0-9]?/, '\1')] = true
       end
       stats[:trna_aa] = aa.size
     end if file_path(:trna_list)

data/lib/miga/version.rb

@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.2, 13, 2].freeze
+  VERSION = [1.2, 13, 4].freeze
 
   ##
   # Nickname for the current major.minor version.
@@ -20,7 +20,7 @@ module MiGA
 
   ##
   # Date of the current gem relese.
-  VERSION_DATE = Date.new(2022, 12, 31)
+  VERSION_DATE = Date.new(2023, 1, 12)
 
   ##
   # References of MiGA

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: miga-base
 version: !ruby/object:Gem::Version
-  version: 1.2.13.2
+  version: 1.2.13.4
 platform: ruby
 authors:
 - Luis M. Rodriguez-R
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2022-12-31 00:00:00.000000000 Z
+date: 2023-01-12 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: daemons