miga-base 1.0.5.5 → 1.1.0.0
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- checksums.yaml +4 -4
- data/lib/miga/cli/action/doctor.rb +12 -4
- data/lib/miga/cli/action/env.rb +1 -1
- data/lib/miga/cli/action/init.rb +1 -1
- data/lib/miga/cli/action/ncbi_get/downloads.rb +230 -0
- data/lib/miga/cli/action/ncbi_get.rb +9 -217
- data/lib/miga/cli/action/wf.rb +7 -3
- data/lib/miga/common.rb +12 -11
- data/lib/miga/dataset/result.rb +2 -1
- data/lib/miga/version.rb +3 -3
- data/scripts/essential_genes.bash +7 -11
- data/test/common_test.rb +7 -7
- data/utils/FastAAI/FastAAI +3630 -0
- data/utils/FastAAI/{FastAAI → FastAAI-legacy}/FastAAI +1 -1
- data/utils/FastAAI/{kAAI_v1.0_virus.py → FastAAI-legacy/kAAI_v1.0_virus.py} +0 -0
- data/utils/distance/commands.rb +24 -13
- metadata +6 -4
data/test/common_test.rb
CHANGED
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@@ -78,21 +78,21 @@ class CommonTest < Test::Unit::TestCase
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78
78
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# Check advance when missing total
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80
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o = capture_stderr { m.advance('x', 0) }.string
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81
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-
assert_match(
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81
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+
assert_match(%r{\] x *\r}, o)
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# Initialize advance
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84
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-
o = capture_stderr { m.advance('x', 0,
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85
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assert_match(
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84
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o = capture_stderr { m.advance('x', 0, 1001) }.string
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85
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assert_match(%r{\] x 0\.0% \(0/1001\) *\r}, o)
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# Insufficient data for prediction
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sleep(1)
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o = capture_stderr { m.advance('x', 1,
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assert_match(
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89
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o = capture_stderr { m.advance('x', 1, 1000) }.string
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90
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assert_match(%r{\] x 0\.1% \(1/1000\) *\r}, o)
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# Predict time
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sleep(1)
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94
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o = capture_stderr { m.advance('x', 2,
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assert_match(
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o = capture_stderr { m.advance('x', 2, 1000) }.string
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assert_match(%r{\] x 0\.2% \(2/1000\) 1\d\.\dm left *\r}, o)
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end
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def test_num_suffix
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