miga-base 1.0.4.0 → 1.0.5.0

checksums.yaml

@@ -1,7 +1,7 @@
 ---
 SHA256:
-  metadata.gz: 2519f1f7a439615e68915b46534a98cdf03c88fa9c64a60dfaa7b6ace394a5ac
-  data.tar.gz: 642ebe775db70dabbad9a20aec03ef269bc62ea3c32c32c48161caeef2a6efda
+  metadata.gz: bc2d6a45a59d47e3490d1e6bbe728961abfc28002c945c0fc371b24277f7abcd
+  data.tar.gz: c20265a37c53e403858c592a72b2de801ab6ce12e48f0fe88d886cea41a94413
 SHA512:
-  metadata.gz: e99839162d562d5636d246179a82a01cc354bd11b12878348031aab30f3afe27777aa3447757af1d34ed0e0b090f5dbc81a35c05416386fd6d64f2f2b116b4c3
-  data.tar.gz: 39bc66a47a078fab4f39216a86faa8d50afb19dbadb23175a0d4fa79c40bf84fc42be4b3ba0394130a725a52307728663bc583cd59e717df17582f2b8cae14ba
+  metadata.gz: 91804137814911287b5f1395e79b28e2805a0584dfb5ff234ca51a2366d17d497acf8a88ee80e18a1b8dd27a1b159ab3433471f82b389fd741825a1f5da57da5
+  data.tar.gz: 97d932379e302a22b2c0f489b5dd6cdd5efe4408c77e9cd32bb3b89efff3bc5f3787d167bc8f46720777dcc4d2efa06fb9b82f77e1903735a4b6e631e20be6f9

data/lib/miga/cli/action/run.rb

@@ -34,7 +34,7 @@ class MiGA::Cli::Action::Run < MiGA::Cli::Action
     if cli[:env]
       cli[:project] ||= ENV['PROJECT']
       cli[:dataset] ||= ENV['DATASET']
-      cli[:thr] ||= ENV['CORES'].to_i unless ENV['CORES'].nil?
+      cli[:thr] = ENV['CORES'].to_i unless ENV['CORES'].nil?
       cli[:result] = File.basename(cli[:result].to_s, '.bash').to_sym
     end
     %i[project dataset result].each do |i|

data/lib/miga/cli/action/wf.rb

@@ -183,6 +183,7 @@ module MiGA::Cli::Action::Wf
     cmd += ['--json', cli[:daemon_json]] unless cli[:daemon_json].nil?
     cmd += ['--max-jobs', cli[:jobs]] unless cli[:jobs].nil?
     cmd += ['--ppn', cli[:threads]] unless cli[:threads].nil?
+    cmd += ['--debug', MiGA::MiGA.debug_trace? ? '2' : '1'] if MiGA::MiGA.debug?
     cwd = Dir.pwd
     call_cli(cmd)
     Dir.chdir(cwd)

data/lib/miga/common/base.rb

@@ -29,10 +29,18 @@ class MiGA::MiGA
     ##
     # Send debug message
     def DEBUG(*args)
-      $stderr.puts(*args) if @@DEBUG
+      $stderr.puts(*args) if debug?
       $stderr.puts(
         caller.map { |v| v.gsub(/^/, '     ') }.join("\n")
-      ) if @@DEBUG_TRACE
+      ) if debug_trace?
+    end
+
+    def debug?
+      @@DEBUG ||= false
+    end
+
+    def debug_trace?
+      @@DEBUG_TRACE ||= false
     end
   end
 end

data/lib/miga/daemon.rb

@@ -329,6 +329,7 @@ class MiGA::Daemon < MiGA::MiGA
   def launch_job(job, hostk = nil)
     # Execute job
     job[:cmd] = job_cmd(job)
+    MiGA::MiGA.DEBUG "CMD: #{job[:cmd]}"
     case runopts(:type)
     when 'ssh'
       # Remote job

data/lib/miga/version.rb

@@ -12,7 +12,7 @@ module MiGA
   # - String indicating release status:
   #   - rc* release candidate, not released as gem
   #   - [0-9]+ stable release, released as gem
-  VERSION = [1.0, 4, 0].freeze
+  VERSION = [1.0, 5, 0].freeze
 
   ##
   # Nickname for the current major.minor version.
@@ -20,7 +20,7 @@ module MiGA
 
   ##
   # Date of the current gem release.
-  VERSION_DATE = Date.new(2021, 6, 16)
+  VERSION_DATE = Date.new(2021, 8, 26)
 
   ##
   # References of MiGA

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: miga-base
 version: !ruby/object:Gem::Version
-  version: 1.0.4.0
+  version: 1.0.5.0
 platform: ruby
 authors:
 - Luis M. Rodriguez-R
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2021-06-16 00:00:00.000000000 Z
+date: 2021-08-26 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: daemons