miga-base 0.7.15.0 → 0.7.15.1

Sign up to get free protection for your applications and to get access to all the features.
checksums.yaml CHANGED
@@ -1,7 +1,7 @@
1
1
  ---
2
2
  SHA256:
3
- metadata.gz: 0160b454e26886637f28dea78ab57e66b1c53ee3fca610c64339f3265ce86afb
4
- data.tar.gz: 6df1a7bfc7ebf0493265cd6be8f8600a575b3c20f07ec43f7c25b8de3035b5c8
3
+ metadata.gz: 23ef43a6cf94c31d470263746a242d8b065899d11e694e4c281c0ec16fc4a335
4
+ data.tar.gz: 7b086c3b966827f7e49559409f89a4ec39af6bc2aec0164be8e06466bd765029
5
5
  SHA512:
6
- metadata.gz: 00245e9a4d698ed335f1777bd1f9156ecc2ba325c4ef66f42f01f9e59c70e4bfb42a588a7be62271dd55df73e2fc737a29e24253487ba55e9d8645a43508d91c
7
- data.tar.gz: 12c8beb33f81fc7114d957a59982d4bfab1deceb21db27dde1a93f474d4ab5918308ac04d351c86b9a71f8a6804e0311b3230ccbad16de320523246f1e7e3f9b
6
+ metadata.gz: 41e99ff68112b6f5d882b43a40e5ee3797e031f55d55b681ab5a9d56a83d70fe650813b3cd9127e35ac60cb88a56399b4165dd116395fcbb709c6a4748e794ef
7
+ data.tar.gz: '0870d670b3a90be77a39d027b00fdc83c01c91b9ab2e0e27ece54b1e90b64f6deb97da206bc93a1c4b1e9c9878d263b62028f63a9dac72349ebe3213f3551cfc'
data/README.md CHANGED
@@ -11,11 +11,12 @@
11
11
 
12
12
  For additional information on MiGA, visit:
13
13
 
14
- * [MiGA Online][miga-online]: The Microbial Genomes Atlas Online.
14
+ * [MiGA Online][miga-online]: The Microbial Genomes Atlas Online
15
+ * [MiGA@XSEDE][miga-at-xsede]: The MiGA@XSEDE Gateway
15
16
  * [MiGA users list][mailing-list]:
16
- Forum to discuss with other users and developers.
17
- * [MiGA manual][manual]: The definitive guide to MiGA.
18
- * [MiGA API docs][rubydoc]: Inner-workings of the `miga-base` gem.
17
+ Forum to discuss with other users and developers
18
+ * [MiGA manual][manual]: The definitive guide to MiGA
19
+ * [MiGA API docs][rubydoc]: Inner-workings of the `miga-base` gem
19
20
  * [MiGA Web][miga-web]: MiGA on Rails!
20
21
 
21
22
  # For the impatient
@@ -39,7 +40,8 @@ You have two options:
39
40
 
40
41
  Developed and maintained by [Luis M. Rodriguez-R][lrr]. MiGA is the result of a
41
42
  collaboration between [Kostas Lab][kostas] at the Georgia Institute of
42
- Technology and [RDP][rdp] at Michigan State University.
43
+ Technology, [Rodriguez-R Lab][lrr] at the University of Innsbruck,
44
+ and [RDP][rdp] at Michigan State University.
43
45
 
44
46
  See also the [complete list of contributors](manual/part1/contributors.md).
45
47
 
@@ -47,7 +49,7 @@ See also the [complete list of contributors](manual/part1/contributors.md).
47
49
 
48
50
  See [LICENSE](LICENSE).
49
51
 
50
- [lrr]: http://lmrodriguezr.github.io/
52
+ [lrr]: https://rodriguez-r.com/
51
53
  [mailing-list]: http://support.microbial-genomes.org/
52
54
  [manual]: https://manual.microbial-genomes.org/
53
55
  [rubydoc]: http://www.rubydoc.info/github/bio-miga/miga
@@ -55,5 +57,6 @@ See [LICENSE](LICENSE).
55
57
  [miga-web]: https://github.com/bio-miga/miga-web
56
58
  [miga-gui]: https://github.com/bio-miga/miga-gui
57
59
  [miga-online]: http://microbial-genomes.org/
60
+ [miga-at-xsede]: https://xsede.microbial-genomes.org/
58
61
  [kostas]: http://enve-omics.gatech.edu/
59
62
  [rdp]: http://rdp.cme.msu.edu/
@@ -77,7 +77,10 @@ module MiGA::Daemon::Base
77
77
  ##
78
78
  # Writing file handler (IO) to the log file
79
79
  def logfh
80
- show_log? ? $stderr : (@logfh ||= File.open(output_file, 'w'))
80
+ return $stderr if show_log?
81
+ return @logfh if @logfh && @logfh.closed?
82
+
83
+ @logfh = File.open(output_file, 'w')
81
84
  end
82
85
 
83
86
  ##
@@ -8,7 +8,7 @@ module MiGA
8
8
  # - Float representing the major.minor version.
9
9
  # - Integer representing gem releases of the current version.
10
10
  # - Integer representing minor changes that require new version number.
11
- VERSION = [0.7, 15, 0]
11
+ VERSION = [0.7, 15, 1]
12
12
 
13
13
  ##
14
14
  # Nickname for the current major.minor version.
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: miga-base
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.7.15.0
4
+ version: 0.7.15.1
5
5
  platform: ruby
6
6
  authors:
7
7
  - Luis M. Rodriguez-R