miga-base 0.7.12.0 → 0.7.12.1
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- checksums.yaml +4 -4
- data/lib/miga/cli/action/browse/about.html +31 -0
- data/lib/miga/cli/action/browse/dataset.html +5 -0
- data/lib/miga/cli/action/browse/dataset_menu_item.html +3 -0
- data/lib/miga/cli/action/browse/datasets.html +4 -0
- data/lib/miga/cli/action/browse/favicon-32.png +0 -0
- data/lib/miga/cli/action/browse/index.html +8 -0
- data/lib/miga/cli/action/browse/layout.html +57 -0
- data/lib/miga/cli/action/browse/redirect.html +11 -0
- data/lib/miga/cli/action/browse/style.css +97 -0
- data/lib/miga/version.rb +2 -2
- metadata +11 -2
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 881c30021a8c7e8219dd2fad710bc3049eb56ce1307c0507607b3dd2c83ab296
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data.tar.gz: 34b47f66564a02413b79e12fa19cf181c639c50ae28030cef624634485c8af9b
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: fb36047b431765f2227e991d7adb5a2899801018a067227e581d8e0b63999082099c8f41138395ce83c86e7664284a9cb9267c280138d62656a8b671ffda2bee
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data.tar.gz: ec59a539424db91f6744799ea022c1aa56c39123b4c43e19f1ce20b01954c16c90e481a4e062d3ed01d912f57eda4c29123047399041889ba1997a4eb839f94d
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@@ -0,0 +1,31 @@
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<h1 class="h2 border-bottom pt-3 pb-2 mb-3">About MiGA</h1>
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<p>
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MiGA is developed and maintained by
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<a href='https://rodriguez-r.com/'>Luis M. Rodriguez-R</a>.
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The MiGA codebase is
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<a href='http://code.microbial-genomes.org/miga'>freely available</a> under the
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terms of the terms of the
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<a href='http://code.microbial-genomes.org/miga/blob/master/LICENSE'>Artistic License 2.0</a>.
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</p>
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<p>
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MiGA is the result of a collaboration between the
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<a href='http://enve-omics.gatech.edu/'>Kostas Lab</a>
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(<a href='http://www.gatech.edu/'>Georgia Institute of Technology</a>) and the
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<a href='http://rdp.cme.msu.edu/'>RDP team</a>
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(<a href='http://cme.msu.edu/'>Center for Microbial Ecology</a>,
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<a href='https://msu.edu/'>Michigan State University</a>).
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The MiGA project is funded by the
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<a href='http://nsf.gov/'>US National Science Foundation</a>
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(Awards <a href='http://nsf.gov/awardsearch/showAward?AWD_ID=1356288'>#1356288</a> &
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<a href='https://xras.xsede.org/public/requests/31162-XSEDE-MCB190042-1190572'>#MCB190042</a>).
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</p>
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<h1 class="h2 border-bottom pt-3 pb-2 mb-3">Citation</h1>
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If you use MiGA in your work, consider citing:
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<blockquote class='border-left p-3'>
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{{citation}}
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</blockquote>
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Binary file
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<!doctype html>
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<head>
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<meta charset="utf-8">
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<title>MiGA | {{project_name}}</title>
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<!-- Remote assets -->
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<link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.5.0/css/bootstrap.min.css" integrity="sha384-9aIt2nRpC12Uk9gS9baDl411NQApFmC26EwAOH8WgZl5MYYxFfc+NcPb1dKGj7Sk" crossorigin="anonymous">
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<script src="https://code.jquery.com/jquery-3.5.1.slim.min.js" integrity="sha384-DfXdz2htPH0lsSSs5nCTpuj/zy4C+OGpamoFVy38MVBnE+IbbVYUew+OrCXaRkfj" crossorigin="anonymous"></script>
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<script src="https://cdn.jsdelivr.net/npm/popper.js@1.16.0/dist/umd/popper.min.js" integrity="sha384-Q6E9RHvbIyZFJoft+2mJbHaEWldlvI9IOYy5n3zV9zzTtmI3UksdQRVvoxMfooAo" crossorigin="anonymous"></script>
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<script src="https://stackpath.bootstrapcdn.com/bootstrap/4.5.0/js/bootstrap.min.js" integrity="sha384-OgVRvuATP1z7JjHLkuOU7Xw704+h835Lr+6QL9UvYjZE3Ipu6Tp75j7Bh/kR0JKI" crossorigin="anonymous"></script>
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<!-- Local assets -->
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<link href="style.css" rel="stylesheet">
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<link rel="icon" href="favicon-32.png" sizes="32x32" type="image/png">
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</head>
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<body>
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<nav class="navbar navbar-dark sticky-top bg-dark flex-md-nowrap p-0 shadow">
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<a class="navbar-brand col-md-12 col-lg-12 mr-0 px-3"
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href="index.html">MiGA | {{project_name}}</a>
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<button class="navbar-toggler position-absolute d-md-none collapsed"
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type="button" data-toggle="collapse" data-target="#sidebarMenu"
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aria-controls="sidebarMenu" aria-expanded="false"
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aria-label="Toggle navigation">
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<span class="navbar-toggler-icon"></span>
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</button>
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</nav>
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<div class="container-fluid">
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<div class="row">
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<nav id="sidebarMenu" class="col-md-3 col-lg-2 d-md-block bg-light sidebar collapse">
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<div class="sidebar-sticky pt-3">
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<ul class="nav flex-column">
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<li class="nav-item">
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<a class="nav-link {{project_active}}" href="index.html">Project</a>
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</li>
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<li class="nav-item">
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<a class="nav-link {{ref_datasets_active}}"
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href="ref_datasets.html">Reference datasets</a>
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</li>
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<li class="nav-item">
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<a class="nav-link {{qry_datasets_active}}"
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href="qry_datasets.html">Query datasets</a>
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</li>
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<li class="nav-item border-top mt-4">
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<a class="nav-link {{about_miga_active}}"
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href="about.html">About MiGA</a>
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</li>
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</ul>
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</div>
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</nav>
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<main role="main" class="col-md-9 ml-sm-auto col-lg-10 px-md-4">
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{{content}}
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</main>
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</div>
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</div>
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</body>
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@@ -0,0 +1,11 @@
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<!doctype html>
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<head>
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<title>MiGA Project</title>
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<meta http-equiv = "refresh" content = "1; url = browse/index.html" />
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</head>
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<body>
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<div style='font-size:200%; margin-top: 5em; text-align: center;'>
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Redirecting to <a href='browse/index.html'>Project page</a>...
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</div>
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</body>
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@@ -0,0 +1,97 @@
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body {
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font-size: .875rem;
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}
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/*
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* Sidebar
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*/
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.sidebar {
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position: fixed;
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top: 0;
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bottom: 0;
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left: 0;
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z-index: 100; /* Behind the navbar */
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padding: 48px 0 0; /* Height of navbar */
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box-shadow: inset -1px 0 0 rgba(0, 0, 0, .1);
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}
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@media (max-width: 767.98px) {
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.sidebar {
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top: 3rem;
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}
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}
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.sidebar-sticky {
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position: relative;
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top: 0;
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height: calc(100vh - 48px);
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padding-top: .5rem;
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overflow-x: hidden;
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overflow-y: auto; /* Scrollable contents if viewport is shorter than content. */
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}
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@supports ((position: -webkit-sticky) or (position: sticky)) {
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.sidebar-sticky {
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position: -webkit-sticky;
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position: sticky;
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}
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}
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.sidebar .nav-link {
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font-weight: 500;
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color: #333;
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}
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.sidebar .nav-link .feather {
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margin-right: 4px;
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color: #999;
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}
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.sidebar .nav-link.active {
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color: #007bff;
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}
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.sidebar .nav-link:hover .feather,
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.sidebar .nav-link.active .feather {
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color: inherit;
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}
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.sidebar-heading {
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font-size: .75rem;
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text-transform: uppercase;
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}
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/*
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* Navbar
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*/
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.navbar-brand {
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padding-top: .75rem;
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padding-bottom: .75rem;
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font-size: 1rem;
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background-color: rgba(0, 0, 0, .25);
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box-shadow: inset -1px 0 0 rgba(0, 0, 0, .25);
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}
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+
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.navbar .navbar-toggler {
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top: .25rem;
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right: 1rem;
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}
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+
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.navbar .form-control {
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padding: .75rem 1rem;
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border-width: 0;
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border-radius: 0;
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}
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+
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.form-control-dark {
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color: #fff;
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background-color: rgba(255, 255, 255, .1);
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border-color: rgba(255, 255, 255, .1);
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}
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+
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.form-control-dark:focus {
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border-color: transparent;
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box-shadow: 0 0 0 3px rgba(255, 255, 255, .25);
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}
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data/lib/miga/version.rb
CHANGED
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@@ -8,7 +8,7 @@ module MiGA
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8
8
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# - Float representing the major.minor version.
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# - Integer representing gem releases of the current version.
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# - Integer representing minor changes that require new version number.
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-
VERSION = [0.7, 12,
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+
VERSION = [0.7, 12, 1]
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12
12
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13
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##
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# Nickname for the current major.minor version.
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@@ -16,7 +16,7 @@ module MiGA
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16
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##
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18
18
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# Date of the current gem release.
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19
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-
VERSION_DATE = Date.new(2020, 7,
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+
VERSION_DATE = Date.new(2020, 7, 24)
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21
21
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##
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22
22
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# Reference of MiGA.
|
metadata
CHANGED
|
@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: miga-base
|
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3
3
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version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.7.12.
|
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4
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+
version: 0.7.12.1
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5
5
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platform: ruby
|
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6
6
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authors:
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7
7
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- Luis M. Rodriguez-R
|
|
8
8
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autorequire:
|
|
9
9
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bindir: bin
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10
10
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cert_chain: []
|
|
11
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-
date: 2020-07-
|
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11
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+
date: 2020-07-24 00:00:00.000000000 Z
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dependencies:
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13
13
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- !ruby/object:Gem::Dependency
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|
14
14
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name: daemons
|
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@@ -119,6 +119,15 @@ files:
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119
119
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- lib/miga/cli/action/add_result.rb
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120
120
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- lib/miga/cli/action/archive.rb
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121
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- lib/miga/cli/action/browse.rb
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- lib/miga/cli/action/browse/about.html
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- lib/miga/cli/action/browse/dataset.html
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- lib/miga/cli/action/browse/dataset_menu_item.html
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125
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- lib/miga/cli/action/browse/datasets.html
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- lib/miga/cli/action/browse/favicon-32.png
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- lib/miga/cli/action/browse/index.html
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- lib/miga/cli/action/browse/layout.html
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- lib/miga/cli/action/browse/redirect.html
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- lib/miga/cli/action/browse/style.css
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- lib/miga/cli/action/classify_wf.rb
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- lib/miga/cli/action/console.rb
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124
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- lib/miga/cli/action/daemon.rb
|