miga-base 0.6.0.0 → 0.6.1.0

data/test/tax_index_test.rb

@@ -1,8 +1,8 @@
-require "test_helper"
-require "miga/tax_index"
+require 'test_helper'
+require 'miga/tax_index'
 
 class TaxIndexTest < Test::Unit::TestCase
-  
+
   def test_initialization
     ti = MiGA::TaxIndex.new
     assert_equal(:root, ti.root.rank)
@@ -10,19 +10,19 @@ class TaxIndexTest < Test::Unit::TestCase
 
   def test_dataset
     $tmp = Dir.mktmpdir
-    ENV["MIGA_HOME"] = $tmp
-    FileUtils.touch("#{ENV["MIGA_HOME"]}/.miga_rc")
-    FileUtils.touch("#{ENV["MIGA_HOME"]}/.miga_daemon.json")
-    p = MiGA::Project.new(File.expand_path("project1", $tmp))
-    d = p.add_dataset("dataset1")
-    
+    ENV['MIGA_HOME'] = $tmp
+    FileUtils.touch(File.expand_path('.miga_rc', ENV["MIGA_HOME"]))
+    FileUtils.touch(File.expand_path('.miga_daemon.json', ENV["MIGA_HOME"]))
+    p = MiGA::Project.new(File.expand_path('project1', $tmp))
+    d = p.add_dataset('dataset1')
+
     ti = MiGA::TaxIndex.new
     assert(ti.datasets.empty?)
     ti << d
-    assert(ti.datasets.empty?, "Index should ignore datasets without tax.")
-    d.metadata[:tax] = MiGA::Taxonomy.new("k:Fantasia g:Unicornia")
+    assert(ti.datasets.empty?, 'Index should ignore datasets without tax.')
+    d.metadata[:tax] = MiGA::Taxonomy.new('k:Fantasia g:Unicornia')
     ti << d
-    assert_equal(1, ti.datasets.size, "Index should have one dataset.")
+    assert_equal(1, ti.datasets.size, 'Index should have one dataset.')
     assert_equal(1, ti.root.datasets_count)
   ensure
     FileUtils.rm_rf $tmp
@@ -31,9 +31,9 @@ class TaxIndexTest < Test::Unit::TestCase
 
   def test_to_json
     js = JSON.parse(MiGA::TaxIndex.new.to_json)
-    assert(js.keys.include? "datasets")
+    assert(js.keys.include? 'datasets')
     assert_equal(2, js.keys.size)
-    assert(js["datasets"].empty?)
+    assert(js['datasets'].empty?)
   end
 
   def test_to_tab

data/test/taxonomy_test.rb

@@ -2,7 +2,7 @@ require 'test_helper'
 require 'miga/taxonomy'
 
 class TaxonomyTest < Test::Unit::TestCase
-  
+
   def test_ranks
     assert_respond_to(MiGA::Taxonomy, :KNOWN_RANKS)
     assert(MiGA::Taxonomy.KNOWN_RANKS.include? :s)
@@ -26,21 +26,22 @@ class TaxonomyTest < Test::Unit::TestCase
     assert_equal(txt, tx.to_s)
     assert_equal(
       [[:k, 'Fantasia'],[:f, 'Dragonaceae'],[:s, 'Dragonia azura']],
-      tx.sorted_ranks)
+      tx.sorted_ranks
+    )
     assert_equal('Irrealis', tx.namespace)
   end
 
   def test_append
     tx = MiGA::Taxonomy.new ''
-    assert_equal("", "#{tx}")
-    tx << ["domain:Public","family:GNU"]
-    assert_equal("GNU", tx[:f])
-    tx << "class:ShareAlike"
-    assert_equal("ShareAlike", tx[:c])
-    tx << { :genus => "v3" }
-    assert_equal("v3", tx[:g])
-    tx << "s:v3_0"
-    assert(tx.in? MiGA::Taxonomy.new("species:v3_0"))
+    assert_equal('', "#{tx}")
+    tx << ['domain:Public', 'family:GNU']
+    assert_equal('GNU', tx[:f])
+    tx << 'class:ShareAlike'
+    assert_equal('ShareAlike', tx[:c])
+    tx << { genus: 'v3' }
+    assert_equal('v3', tx[:g])
+    tx << 's:v3_0'
+    assert(tx.in? MiGA::Taxonomy.new('species:v3_0'))
     assert_raise(RuntimeError) { tx << 123 }
   end
 

data/test/test_helper.rb

@@ -1,16 +1,16 @@
-require "simplecov"
+require 'simplecov'
 SimpleCov.start
 
-require "rubygems"
-require "test/unit"
-require "miga/common"
-require "stringio"
+require 'rubygems'
+require 'test/unit'
+require 'miga/common'
+require 'stringio'
 
 ##
 # Kernel extensions tp capture +$stdout+ and +$stderr+ based on
 # http://thinkingdigitally.com/archive/capturing-output-from-puts-in-ruby/
 module Kernel
-  
+
   def capture_stdout
     out = StringIO.new
     $stdout = out

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: miga-base
 version: !ruby/object:Gem::Version
-  version: 0.6.0.0
+  version: 0.6.1.0
 platform: ruby
 authors:
 - Luis M. Rodriguez-R
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2020-03-07 00:00:00.000000000 Z
+date: 2020-03-10 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: daemons
@@ -101,6 +101,7 @@ files:
 - lib/miga/cli/action/about.rb
 - lib/miga/cli/action/add.rb
 - lib/miga/cli/action/add_result.rb
+- lib/miga/cli/action/archive.rb
 - lib/miga/cli/action/classify_wf.rb
 - lib/miga/cli/action/console.rb
 - lib/miga/cli/action/daemon.rb
@@ -197,6 +198,7 @@ files:
 - test/metadata_test.rb
 - test/project_test.rb
 - test/remote_dataset_test.rb
+- test/result_test.rb
 - test/tax_index_test.rb
 - test/taxonomy_test.rb
 - test/test_helper.rb