miga-base 0.3.6.3 → 0.3.7.0

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Files changed (21) hide show
  1. checksums.yaml +5 -5
  2. data/actions/init.rb +1 -1
  3. data/actions/tax_dist.rb +32 -26
  4. data/bin/miga +38 -38
  5. data/lib/miga/daemon.rb +11 -5
  6. data/lib/miga/version.rb +1 -1
  7. data/scripts/ogs.bash +4 -2
  8. data/utils/cleanup-databases.rb +6 -5
  9. data/utils/distance/commands.rb +1 -0
  10. data/utils/enveomics/Pipelines/assembly.pbs/FastA.N50.pl +56 -0
  11. data/utils/enveomics/Pipelines/assembly.pbs/FastA.filterN.pl +60 -0
  12. data/utils/enveomics/Pipelines/assembly.pbs/FastA.length.pl +38 -0
  13. data/utils/enveomics/Pipelines/blast.pbs/FastA.split.pl +55 -0
  14. data/utils/plot-taxdist.R +42 -33
  15. data/utils/requirements.txt +1 -0
  16. metadata +179 -179
  17. data/utils/enveomics/Pipelines/assembly.pbs/FastA.N50.pl +0 -1
  18. data/utils/enveomics/Pipelines/assembly.pbs/FastA.filterN.pl +0 -1
  19. data/utils/enveomics/Pipelines/assembly.pbs/FastA.length.pl +0 -1
  20. data/utils/enveomics/Pipelines/blast.pbs/FastA.split.pl +0 -1
  21. data/utils/enveomics/Scripts/lib/enveomics.R +0 -1
data/utils/enveomics/Pipelines/assembly.pbs/FastA.N50.pl DELETED
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- utils/enveomics/Pipelines/assembly.pbs/../../Scripts/FastA.N50.pl
data/utils/enveomics/Pipelines/assembly.pbs/FastA.filterN.pl DELETED
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- utils/enveomics/Pipelines/assembly.pbs/../../Scripts/FastA.filterN.pl
data/utils/enveomics/Pipelines/assembly.pbs/FastA.length.pl DELETED
@@ -1 +0,0 @@
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- utils/enveomics/Pipelines/assembly.pbs/../../Scripts/FastA.length.pl
data/utils/enveomics/Pipelines/blast.pbs/FastA.split.pl DELETED
@@ -1 +0,0 @@
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- utils/enveomics/Pipelines/blast.pbs/../../Scripts/FastA.split.pl
data/utils/enveomics/Scripts/lib/enveomics.R DELETED
@@ -1 +0,0 @@
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- utils/enveomics/Scripts/lib/../../enveomics.R