miga-base 0.3.13.0 → 0.3.13.1
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- checksums.yaml +4 -4
- data/lib/miga/dataset/base.rb +6 -6
- data/lib/miga/version.rb +2 -2
- data/utils/enveomics/Pipelines/assembly.pbs/FastA.N50.pl +1 -1
- data/utils/enveomics/Pipelines/assembly.pbs/FastA.filterN.pl +1 -1
- data/utils/enveomics/Pipelines/assembly.pbs/FastA.length.pl +1 -1
- data/utils/enveomics/Pipelines/blast.pbs/FastA.split.pl +1 -1
- data/utils/enveomics/Scripts/lib/enveomics.R +1 -1
- metadata +4 -3
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA256:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: f3dfdd455be947124886bb35a9e6ebc800e63e9eae62d8d61f7e3f647732ebfd
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4
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+
data.tar.gz: 536a76534d93cfdd50ea58e7036df5cfc01d6bb28314d42d8f43490b318ad3ee
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5
5
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SHA512:
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|
6
|
-
metadata.gz:
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|
7
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-
data.tar.gz:
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6
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+
metadata.gz: 1294bcb2f772e520bfe5f289df53f8b03dc9b8cfb97d1a514753d776295a5052f2cd19d831b7e015b124d4eede94a58b518b0c4a52ed7ae2b9ba68c1e9c1ba93
|
|
7
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+
data.tar.gz: dfc521fe2478f0cbf8c5a4d1ac25c5a20705885a1bdd94a2445d317dfccab7018fe80e4664b929a45e2b3c773427d2bd34fed7597eb890f28ad2e99bf4632dc5
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data/lib/miga/dataset/base.rb
CHANGED
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@@ -35,14 +35,14 @@ module MiGA::Dataset::Base
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35
35
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##
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36
36
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# Supported dataset types.
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37
37
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@@KNOWN_TYPES = {
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|
38
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-
genome: {description:
|
|
39
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-
scgenome: {description:
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|
38
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+
genome: {description: 'The genome from an isolate.', multi: false},
|
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39
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+
scgenome: {description: 'A Single-cell Amplidied Genome (SAG).',
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40
40
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multi: false},
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|
41
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-
popgenome: {description:
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|
42
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-
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|
43
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-
metagenome: {description:
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|
41
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+
popgenome: {description: 'A Metagenome-Assembled Genome (MAG).',
|
|
42
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+
:multi=>false},
|
|
43
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+
metagenome: {description: 'A metagenome (excluding viromes).',
|
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44
44
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multi: true},
|
|
45
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-
virome: {description:
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45
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+
virome: {description: 'A viral metagenome.', multi: true}
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|
46
46
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}
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47
47
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48
48
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##
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data/lib/miga/version.rb
CHANGED
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@@ -10,7 +10,7 @@ module MiGA
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10
10
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# - Float representing the major.minor version.
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11
11
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# - Integer representing gem releases of the current version.
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|
12
12
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# - Integer representing minor changes that require new version number.
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|
13
|
-
VERSION = [0.3, 13,
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|
13
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+
VERSION = [0.3, 13, 1]
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14
14
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|
15
15
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##
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|
16
16
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# Nickname for the current major.minor version.
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@@ -18,7 +18,7 @@ module MiGA
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18
18
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19
19
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##
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|
20
20
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# Date of the current gem release.
|
|
21
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-
VERSION_DATE = Date.new(2019, 8,
|
|
21
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+
VERSION_DATE = Date.new(2019, 8, 8)
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|
22
22
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23
23
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##
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|
24
24
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# Reference of MiGA.
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@@ -1 +1 @@
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1
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-
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1
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+
utils/enveomics/Pipelines/assembly.pbs/../../Scripts/FastA.N50.pl
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@@ -1 +1 @@
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1
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-
|
|
1
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+
utils/enveomics/Pipelines/assembly.pbs/../../Scripts/FastA.filterN.pl
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|
@@ -1 +1 @@
|
|
|
1
|
-
|
|
1
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+
utils/enveomics/Pipelines/assembly.pbs/../../Scripts/FastA.length.pl
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|
@@ -1 +1 @@
|
|
|
1
|
-
|
|
1
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+
utils/enveomics/Pipelines/blast.pbs/../../Scripts/FastA.split.pl
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|
@@ -1 +1 @@
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|
|
1
|
-
|
|
1
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+
utils/enveomics/Scripts/lib/../../enveomics.R
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metadata
CHANGED
|
@@ -1,14 +1,14 @@
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|
|
1
1
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--- !ruby/object:Gem::Specification
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|
2
2
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name: miga-base
|
|
3
3
|
version: !ruby/object:Gem::Version
|
|
4
|
-
version: 0.3.13.
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|
4
|
+
version: 0.3.13.1
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|
5
5
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platform: ruby
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|
6
6
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authors:
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|
7
7
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- Luis M. Rodriguez-R
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|
8
8
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autorequire:
|
|
9
9
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bindir: bin
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|
10
10
|
cert_chain: []
|
|
11
|
-
date: 2019-08-
|
|
11
|
+
date: 2019-08-08 00:00:00.000000000 Z
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|
12
12
|
dependencies:
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|
13
13
|
- !ruby/object:Gem::Dependency
|
|
14
14
|
name: daemons
|
|
@@ -509,7 +509,8 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
|
509
509
|
- !ruby/object:Gem::Version
|
|
510
510
|
version: '0'
|
|
511
511
|
requirements: []
|
|
512
|
-
|
|
512
|
+
rubyforge_project:
|
|
513
|
+
rubygems_version: 2.7.6
|
|
513
514
|
signing_key:
|
|
514
515
|
specification_version: 4
|
|
515
516
|
summary: MiGA
|