miga-base 0.3.1.3 → 0.3.1.4
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- checksums.yaml +4 -4
- data/actions/stats.rb +6 -4
- data/bin/miga +3 -1
- data/lib/miga/common.rb +26 -18
- data/lib/miga/daemon.rb +59 -54
- data/lib/miga/dataset.rb +17 -171
- data/lib/miga/dataset/base.rb +73 -0
- data/lib/miga/{dataset_result.rb → dataset/result.rb} +105 -1
- data/lib/miga/project.rb +6 -315
- data/lib/miga/project/base.rb +99 -0
- data/lib/miga/project/dataset.rb +148 -0
- data/lib/miga/project/plugins.rb +41 -0
- data/lib/miga/{project_result.rb → project/result.rb} +66 -1
- data/lib/miga/version.rb +1 -1
- data/scripts/cds.bash +7 -0
- data/test/remote_dataset_test.rb +9 -7
- data/utils/distances.rb +16 -0
- data/utils/distances/functions.rb +58 -0
- data/utils/distances/ref-nomulti.rb +2 -0
- metadata +11 -4
metadata
CHANGED
@@ -1,14 +1,14 @@
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|
1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: miga-base
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3
3
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version: !ruby/object:Gem::Version
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4
|
-
version: 0.3.1.
|
4
|
+
version: 0.3.1.4
|
5
5
|
platform: ruby
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6
6
|
authors:
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7
7
|
- Luis M. Rodriguez-R
|
8
8
|
autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
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11
|
-
date: 2017-
|
11
|
+
date: 2017-12-31 00:00:00.000000000 Z
|
12
12
|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
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14
14
|
name: rest-client
|
@@ -146,10 +146,14 @@ files:
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|
146
146
|
- lib/miga/common.rb
|
147
147
|
- lib/miga/daemon.rb
|
148
148
|
- lib/miga/dataset.rb
|
149
|
-
- lib/miga/
|
149
|
+
- lib/miga/dataset/base.rb
|
150
|
+
- lib/miga/dataset/result.rb
|
150
151
|
- lib/miga/metadata.rb
|
151
152
|
- lib/miga/project.rb
|
152
|
-
- lib/miga/
|
153
|
+
- lib/miga/project/base.rb
|
154
|
+
- lib/miga/project/dataset.rb
|
155
|
+
- lib/miga/project/plugins.rb
|
156
|
+
- lib/miga/project/result.rb
|
153
157
|
- lib/miga/remote_dataset.rb
|
154
158
|
- lib/miga/result.rb
|
155
159
|
- lib/miga/tax_dist.rb
|
@@ -192,6 +196,9 @@ files:
|
|
192
196
|
- utils/adapters.fa
|
193
197
|
- utils/arch-ess-genes.rb
|
194
198
|
- utils/core-pan-plot.R
|
199
|
+
- utils/distances.rb
|
200
|
+
- utils/distances/functions.rb
|
201
|
+
- utils/distances/ref-nomulti.rb
|
195
202
|
- utils/enveomics/Examples/aai-matrix.bash
|
196
203
|
- utils/enveomics/Examples/ani-matrix.bash
|
197
204
|
- utils/enveomics/Examples/essential-phylogeny.bash
|