miga-base 0.3.1.3 → 0.3.1.4
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/actions/stats.rb +6 -4
- data/bin/miga +3 -1
- data/lib/miga/common.rb +26 -18
- data/lib/miga/daemon.rb +59 -54
- data/lib/miga/dataset.rb +17 -171
- data/lib/miga/dataset/base.rb +73 -0
- data/lib/miga/{dataset_result.rb → dataset/result.rb} +105 -1
- data/lib/miga/project.rb +6 -315
- data/lib/miga/project/base.rb +99 -0
- data/lib/miga/project/dataset.rb +148 -0
- data/lib/miga/project/plugins.rb +41 -0
- data/lib/miga/{project_result.rb → project/result.rb} +66 -1
- data/lib/miga/version.rb +1 -1
- data/scripts/cds.bash +7 -0
- data/test/remote_dataset_test.rb +9 -7
- data/utils/distances.rb +16 -0
- data/utils/distances/functions.rb +58 -0
- data/utils/distances/ref-nomulti.rb +2 -0
- metadata +11 -4
metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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name: miga-base
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version: !ruby/object:Gem::Version
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4
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-
version: 0.3.1.
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4
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+
version: 0.3.1.4
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platform: ruby
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authors:
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- Luis M. Rodriguez-R
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2017-
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+
date: 2017-12-31 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rest-client
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@@ -146,10 +146,14 @@ files:
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146
146
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- lib/miga/common.rb
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147
147
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- lib/miga/daemon.rb
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148
148
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- lib/miga/dataset.rb
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149
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-
- lib/miga/
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149
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+
- lib/miga/dataset/base.rb
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150
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+
- lib/miga/dataset/result.rb
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150
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- lib/miga/metadata.rb
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- lib/miga/project.rb
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152
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-
- lib/miga/
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153
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+
- lib/miga/project/base.rb
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154
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+
- lib/miga/project/dataset.rb
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155
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+
- lib/miga/project/plugins.rb
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156
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+
- lib/miga/project/result.rb
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153
157
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- lib/miga/remote_dataset.rb
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154
158
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- lib/miga/result.rb
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155
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- lib/miga/tax_dist.rb
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@@ -192,6 +196,9 @@ files:
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- utils/adapters.fa
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- utils/arch-ess-genes.rb
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- utils/core-pan-plot.R
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199
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+
- utils/distances.rb
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200
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+
- utils/distances/functions.rb
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201
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+
- utils/distances/ref-nomulti.rb
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- utils/enveomics/Examples/aai-matrix.bash
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196
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- utils/enveomics/Examples/ani-matrix.bash
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197
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- utils/enveomics/Examples/essential-phylogeny.bash
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