miga-base 0.3.1.0 → 0.3.1.1
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- checksums.yaml +4 -4
- data/actions/stats.rb +1 -1
- data/lib/miga/dataset_result.rb +3 -3
- data/lib/miga/version.rb +1 -1
- metadata +1 -1
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
|
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: b722632a715da6a149257fe83361a009f7d1c965
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4
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+
data.tar.gz: 5e5582682e72ea8cfff97e82c6f72a85de7ab9b4
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: 37f1df3197453259c9a0eec7dcd679378edeb4605d63d98b2c80d57d02a966391829ee08faa8039ff44f431cf144c6e9fc1b4c75ac8bbb1683b92ebd683cbfb8
|
7
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+
data.tar.gz: a5a5af7f26b8fce3979669d76c6df85ccdc94da052db2292571b8a00e594144016517226d937a59e9ef5a61d6191d09c92b976ebd6abb5e5ef875fb19e882786
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data/actions/stats.rb
CHANGED
@@ -102,7 +102,7 @@ if o[:compute]
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102
102
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q_range = stats[:quality] > 80.0 ? :excellent :
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103
103
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stats[:quality] > 50.0 ? :high :
|
104
104
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stats[:quality] > 20.0 ? :intermediate : :low
|
105
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-
d.metadata[:
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105
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+
d.metadata[:quality] = q_range
|
106
106
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d.save
|
107
107
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end
|
108
108
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when :distances
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data/lib/miga/dataset_result.rb
CHANGED
@@ -191,8 +191,7 @@ module MiGA::DatasetResult
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|
191
191
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##
|
192
192
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# Add result type +:taxonomy+ at +base+ (no +_opts+ supported).
|
193
193
|
def add_result_taxonomy(base, _opts)
|
194
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-
|
195
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-
add_files_to_ds_result(r, name, intax_test:".intax.txt")
|
194
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+
add_result_distances_nonref(base)
|
196
195
|
end
|
197
196
|
|
198
197
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##
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@@ -228,7 +227,8 @@ module MiGA::DatasetResult
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|
228
227
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r = MiGA::Result.new("#{base}.json")
|
229
228
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add_files_to_ds_result(r, name, aai_medoids:".aai-medoids.tsv",
|
230
229
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haai_db:".haai.db", aai_db:".aai.db", ani_medoids:".ani-medoids.tsv",
|
231
|
-
ani_db:".ani.db", ref_tree:".nwk", ref_tree_pdf:".nwk.pdf"
|
230
|
+
ani_db:".ani.db", ref_tree:".nwk", ref_tree_pdf:".nwk.pdf",
|
231
|
+
intax_test:".intax.txt")
|
232
232
|
end
|
233
233
|
|
234
234
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##
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data/lib/miga/version.rb
CHANGED
@@ -10,7 +10,7 @@ module MiGA
|
|
10
10
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# - Float representing the major.minor version.
|
11
11
|
# - Integer representing gem releases of the current version.
|
12
12
|
# - Integer representing minor changes that require new version number.
|
13
|
-
VERSION = [0.3, 1,
|
13
|
+
VERSION = [0.3, 1, 1]
|
14
14
|
|
15
15
|
##
|
16
16
|
# Nickname for the current major.minor version.
|