mida_vocabulary 0.2 → 0.2.2

data/lib/mida_vocabulary/vocabularies/schemaorg/medicalconditionstage.rb

@@ -11,6 +11,14 @@ module Mida
       itemtype %r{http://schema.org/MedicalConditionStage}i
       include_vocabulary Mida::SchemaOrg::MedicalEntity
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # The stage represented as a number, e.g. 3.
+      has_many 'stageAsNumber' do
+        extract Mida::DataType::Number
+      end
+
+      # The substage, e.g. 'a' for Stage IIIa.
+      has_many 'subStageSuffix'
     end
 
   end

data/lib/mida_vocabulary/vocabularies/schemaorg/medicaldevice.rb

@@ -5,12 +5,55 @@ module Mida
 
     autoload :MedicalEntity, 'mida_vocabulary/vocabularies/schemaorg/medicalentity'
     autoload :Thing, 'mida_vocabulary/vocabularies/schemaorg/thing'
+    autoload :MedicalContraindication, 'mida_vocabulary/vocabularies/schemaorg/medicalcontraindication'
+    autoload :MedicalIndication, 'mida_vocabulary/vocabularies/schemaorg/medicalindication'
+    autoload :MedicalDevicePurpose, 'mida_vocabulary/vocabularies/schemaorg/medicaldevicepurpose'
 
     # Any object used in a medical capacity, such as to diagnose or treat a patient.
     class MedicalDevice < Mida::Vocabulary
       itemtype %r{http://schema.org/MedicalDevice}i
       include_vocabulary Mida::SchemaOrg::MedicalEntity
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # A possible complication and/or side effect of this therapy. If it is known that an adverse outcome is serious (resulting in death, disability, or permanent damage; requiring hospitalization; or is otherwise life-threatening or requires immediate medical attention), tag it as a seriouseAdverseOutcome instead.
+      has_many 'adverseOutcome' do
+        extract Mida::SchemaOrg::MedicalEntity
+        extract Mida::DataType::Text
+      end
+
+      # A contraindication for this therapy.
+      has_many 'contraindication' do
+        extract Mida::SchemaOrg::MedicalContraindication
+        extract Mida::DataType::Text
+      end
+
+      # A factor that indicates use of this therapy for treatment and/or prevention of a condition, symptom, etc. For therapies such as drugs, indications can include both officially-approved indications as well as off-label uses. These can be distinguished by using the ApprovedIndication subtype of MedicalIndication.
+      has_many 'indication' do
+        extract Mida::SchemaOrg::MedicalIndication
+        extract Mida::DataType::Text
+      end
+
+      # A description of the postoperative procedures, care, and/or followups for this device.
+      has_many 'postOp'
+
+      # A description of the workup, testing, and other preparations required before implanting this device.
+      has_many 'preOp'
+
+      # A description of the procedure involved in setting up, using, and/or installing the device.
+      has_many 'procedure'
+
+      # A goal towards an action is taken. Can be concrete or abstract.
+      has_many 'purpose' do
+        extract Mida::SchemaOrg::MedicalDevicePurpose
+        extract Mida::SchemaOrg::Thing
+        extract Mida::DataType::Text
+      end
+
+      # A possible serious complication and/or serious side effect of this therapy. Serious adverse outcomes include those that are life-threatening; result in death, disability, or permanent damage; require hospitalization or prolong existing hospitalization; cause congenital anomalies or birth defects; or jeopardize the patient and may require medical or surgical intervention to prevent one of the outcomes in this definition.
+      has_many 'seriousAdverseOutcome' do
+        extract Mida::SchemaOrg::MedicalEntity
+        extract Mida::DataType::Text
+      end
     end
 
   end

data/lib/mida_vocabulary/vocabularies/schemaorg/medicalentity.rb

@@ -4,11 +4,54 @@ module Mida
   module SchemaOrg
 
     autoload :Thing, 'mida_vocabulary/vocabularies/schemaorg/thing'
+    autoload :MedicalCode, 'mida_vocabulary/vocabularies/schemaorg/medicalcode'
+    autoload :MedicalGuideline, 'mida_vocabulary/vocabularies/schemaorg/medicalguideline'
+    autoload :MedicineSystem, 'mida_vocabulary/vocabularies/schemaorg/medicinesystem'
+    autoload :Organization, 'mida_vocabulary/vocabularies/schemaorg/organization'
+    autoload :MedicalSpecialty, 'mida_vocabulary/vocabularies/schemaorg/medicalspecialty'
+    autoload :MedicalStudy, 'mida_vocabulary/vocabularies/schemaorg/medicalstudy'
 
     # The most generic type of entity related to health and the practice of medicine.
     class MedicalEntity < Mida::Vocabulary
       itemtype %r{http://schema.org/MedicalEntity}i
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # An alias for the item.
+      has_many 'alternateName'
+
+      # A medical code for the entity, taken from a controlled vocabulary or ontology such as ICD-9, DiseasesDB, MeSH, SNOMED-CT, RxNorm, etc.
+      has_many 'code' do
+        extract Mida::SchemaOrg::MedicalCode
+        extract Mida::DataType::Text
+      end
+
+      # A medical guideline related to this entity.
+      has_many 'guideline' do
+        extract Mida::SchemaOrg::MedicalGuideline
+        extract Mida::DataType::Text
+      end
+
+      # The system of medicine that includes this MedicalEntity, for example 'evidence-based', 'homeopathic', 'chiropractic', etc.
+      has_many 'medicineSystem' do
+        extract Mida::SchemaOrg::MedicineSystem
+      end
+
+      # If applicable, the organization that officially recognizes this entity as part of its endorsed system of medicine.
+      has_many 'recognizingAuthority' do
+        extract Mida::SchemaOrg::Organization
+        extract Mida::DataType::Text
+      end
+
+      # If applicable, a medical specialty in which this entity is relevant.
+      has_many 'relevantSpecialty' do
+        extract Mida::SchemaOrg::MedicalSpecialty
+      end
+
+      # A medical study or trial related to this entity.
+      has_many 'study' do
+        extract Mida::SchemaOrg::MedicalStudy
+        extract Mida::DataType::Text
+      end
     end
 
   end

data/lib/mida_vocabulary/vocabularies/schemaorg/medicalguideline.rb

@@ -5,12 +5,32 @@ module Mida
 
     autoload :MedicalEntity, 'mida_vocabulary/vocabularies/schemaorg/medicalentity'
     autoload :Thing, 'mida_vocabulary/vocabularies/schemaorg/thing'
+    autoload :MedicalEvidenceLevel, 'mida_vocabulary/vocabularies/schemaorg/medicalevidencelevel'
 
     # Any recommendation made by a standard society (e.g. ACC/AHA) or consensus statement that denotes how to diagnose and treat a particular condition. Note: this type should be used to tag the actual guideline recommendation; if the guideline recommendation occurs in a larger scholarly article, use MedicalScholarlyArticle to tag the overall article, not this type. Note also: the organization making the recommendation should be captured in the recognizingAuthority base property of MedicalEntity.
     class MedicalGuideline < Mida::Vocabulary
       itemtype %r{http://schema.org/MedicalGuideline}i
       include_vocabulary Mida::SchemaOrg::MedicalEntity
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # Strength of evidence of the data used to formulate the guideline (enumerated).
+      has_many 'evidenceLevel' do
+        extract Mida::SchemaOrg::MedicalEvidenceLevel
+      end
+
+      # Source of the data used to formulate the guidance, e.g. RCT, consensus opinion, etc.
+      has_many 'evidenceOrigin'
+
+      # Date on which this guideline's recommendation was made.
+      has_many 'guidelineDate' do
+        extract Mida::DataType::ISO8601Date
+      end
+
+      # The medical conditions, treatments, etc. that are the subject of the guideline.
+      has_many 'guidelineSubject' do
+        extract Mida::SchemaOrg::MedicalEntity
+        extract Mida::DataType::Text
+      end
     end
 
   end

data/lib/mida_vocabulary/vocabularies/schemaorg/medicalguidelinerecommendation.rb

@@ -13,6 +13,9 @@ module Mida
       include_vocabulary Mida::SchemaOrg::MedicalGuideline
       include_vocabulary Mida::SchemaOrg::MedicalEntity
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # Strength of the guideline's recommendation (e.g. 'class I').
+      has_many 'recommendationStrength'
     end
 
   end

data/lib/mida_vocabulary/vocabularies/schemaorg/medicalobservationalstudy.rb

@@ -6,6 +6,7 @@ module Mida
     autoload :MedicalStudy, 'mida_vocabulary/vocabularies/schemaorg/medicalstudy'
     autoload :MedicalEntity, 'mida_vocabulary/vocabularies/schemaorg/medicalentity'
     autoload :Thing, 'mida_vocabulary/vocabularies/schemaorg/thing'
+    autoload :MedicalObservationalStudyDesign, 'mida_vocabulary/vocabularies/schemaorg/medicalobservationalstudydesign'
 
     # An observational study is a type of medical study that attempts to infer the possible effect of a treatment through observation of a cohort of subjects over a period of time. In an observational study, the assignment of subjects into treatment groups versus control groups is outside the control of the investigator. This is in contrast with controlled studies, such as the randomized controlled trials represented by MedicalTrial, where each subject is randomly assigned to a treatment group or a control group before the start of the treatment.
     class MedicalObservationalStudy < Mida::Vocabulary
@@ -13,6 +14,11 @@ module Mida
       include_vocabulary Mida::SchemaOrg::MedicalStudy
       include_vocabulary Mida::SchemaOrg::MedicalEntity
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # Specifics about the observational study design (enumerated).
+      has_many 'studyDesign' do
+        extract Mida::SchemaOrg::MedicalObservationalStudyDesign
+      end
     end
 
   end

data/lib/mida_vocabulary/vocabularies/schemaorg/medicalprocedure.rb

@@ -5,12 +5,27 @@ module Mida
 
     autoload :MedicalEntity, 'mida_vocabulary/vocabularies/schemaorg/medicalentity'
     autoload :Thing, 'mida_vocabulary/vocabularies/schemaorg/thing'
+    autoload :MedicalProcedureType, 'mida_vocabulary/vocabularies/schemaorg/medicalproceduretype'
 
     # A process of care used in either a diagnostic, therapeutic, or palliative capacity that relies on invasive (surgical), non-invasive, or percutaneous techniques.
     class MedicalProcedure < Mida::Vocabulary
       itemtype %r{http://schema.org/MedicalProcedure}i
       include_vocabulary Mida::SchemaOrg::MedicalEntity
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # Typical or recommended followup care after the procedure is performed.
+      has_many 'followup'
+
+      # How the procedure is performed.
+      has_many 'howPerformed'
+
+      # Typical preparation that a patient must undergo before having the procedure performed.
+      has_many 'preparation'
+
+      # The type of procedure, for example Surgical, Noninvasive, or Percutaneous.
+      has_many 'procedureType' do
+        extract Mida::SchemaOrg::MedicalProcedureType
+      end
     end
 
   end

data/lib/mida_vocabulary/vocabularies/schemaorg/medicalriskestimator.rb

@@ -5,12 +5,25 @@ module Mida
 
     autoload :MedicalEntity, 'mida_vocabulary/vocabularies/schemaorg/medicalentity'
     autoload :Thing, 'mida_vocabulary/vocabularies/schemaorg/thing'
+    autoload :MedicalRiskFactor, 'mida_vocabulary/vocabularies/schemaorg/medicalriskfactor'
 
     # Any rule set or interactive tool for estimating the risk of developing a complication or condition.
     class MedicalRiskEstimator < Mida::Vocabulary
       itemtype %r{http://schema.org/MedicalRiskEstimator}i
       include_vocabulary Mida::SchemaOrg::MedicalEntity
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # The condition, complication, or symptom whose risk is being estimated.
+      has_many 'estimatesRiskOf' do
+        extract Mida::SchemaOrg::MedicalEntity
+        extract Mida::DataType::Text
+      end
+
+      # A modifiable or non-modifiable risk factor included in the calculation, e.g. age, coexisting condition.
+      has_many 'includedRiskFactor' do
+        extract Mida::SchemaOrg::MedicalRiskFactor
+        extract Mida::DataType::Text
+      end
     end
 
   end

data/lib/mida_vocabulary/vocabularies/schemaorg/medicalriskfactor.rb

@@ -11,6 +11,12 @@ module Mida
       itemtype %r{http://schema.org/MedicalRiskFactor}i
       include_vocabulary Mida::SchemaOrg::MedicalEntity
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # The condition, complication, etc. influenced by this factor.
+      has_many 'increasesRiskOf' do
+        extract Mida::SchemaOrg::MedicalEntity
+        extract Mida::DataType::Text
+      end
     end
 
   end

data/lib/mida_vocabulary/vocabularies/schemaorg/medicalriskscore.rb

@@ -13,6 +13,9 @@ module Mida
       include_vocabulary Mida::SchemaOrg::MedicalRiskEstimator
       include_vocabulary Mida::SchemaOrg::MedicalEntity
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # The algorithm or rules to follow to compute the score.
+      has_many 'algorithm'
     end
 
   end

data/lib/mida_vocabulary/vocabularies/schemaorg/medicalscholarlyarticle.rb

@@ -13,6 +13,9 @@ module Mida
       include_vocabulary Mida::SchemaOrg::Article
       include_vocabulary Mida::SchemaOrg::CreativeWork
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # The type of the medical article, taken from the US NLM MeSH publication type catalog.
+      has_many 'publicationType'
     end
 
   end

data/lib/mida_vocabulary/vocabularies/schemaorg/medicalsign.rb

@@ -6,6 +6,8 @@ module Mida
     autoload :MedicalSignOrSymptom, 'mida_vocabulary/vocabularies/schemaorg/medicalsignorsymptom'
     autoload :MedicalEntity, 'mida_vocabulary/vocabularies/schemaorg/medicalentity'
     autoload :Thing, 'mida_vocabulary/vocabularies/schemaorg/thing'
+    autoload :PhysicalExam, 'mida_vocabulary/vocabularies/schemaorg/physicalexam'
+    autoload :MedicalTest, 'mida_vocabulary/vocabularies/schemaorg/medicaltest'
 
     # Any physical manifestation of a person's medical condition discoverable by objective diagnostic tests or physical examination.
     class MedicalSign < Mida::Vocabulary
@@ -13,6 +15,17 @@ module Mida
       include_vocabulary Mida::SchemaOrg::MedicalSignOrSymptom
       include_vocabulary Mida::SchemaOrg::MedicalEntity
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # A physical examination that can identify this sign.
+      has_many 'identifyingExam' do
+        extract Mida::SchemaOrg::PhysicalExam
+      end
+
+      # A diagnostic test that can identify this sign.
+      has_many 'identifyingTest' do
+        extract Mida::SchemaOrg::MedicalTest
+        extract Mida::DataType::Text
+      end
     end
 
   end

data/lib/mida_vocabulary/vocabularies/schemaorg/medicalsignorsymptom.rb

@@ -5,12 +5,26 @@ module Mida
 
     autoload :MedicalEntity, 'mida_vocabulary/vocabularies/schemaorg/medicalentity'
     autoload :Thing, 'mida_vocabulary/vocabularies/schemaorg/thing'
+    autoload :MedicalCause, 'mida_vocabulary/vocabularies/schemaorg/medicalcause'
+    autoload :MedicalTherapy, 'mida_vocabulary/vocabularies/schemaorg/medicaltherapy'
 
     # Any indication of the existence of a medical condition or disease.
     class MedicalSignOrSymptom < Mida::Vocabulary
       itemtype %r{http://schema.org/MedicalSignOrSymptom}i
       include_vocabulary Mida::SchemaOrg::MedicalEntity
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # An underlying cause. More specifically, one of the causative agent(s) that are most directly responsible for the pathophysiologic process that eventually results in the occurrence.
+      has_many 'cause' do
+        extract Mida::SchemaOrg::MedicalCause
+        extract Mida::DataType::Text
+      end
+
+      # A possible treatment to address this condition, sign or symptom.
+      has_many 'possibleTreatment' do
+        extract Mida::SchemaOrg::MedicalTherapy
+        extract Mida::DataType::Text
+      end
     end
 
   end

data/lib/mida_vocabulary/vocabularies/schemaorg/medicalstudy.rb

@@ -5,12 +5,44 @@ module Mida
 
     autoload :MedicalEntity, 'mida_vocabulary/vocabularies/schemaorg/medicalentity'
     autoload :Thing, 'mida_vocabulary/vocabularies/schemaorg/thing'
+    autoload :Organization, 'mida_vocabulary/vocabularies/schemaorg/organization'
+    autoload :MedicalStudyStatus, 'mida_vocabulary/vocabularies/schemaorg/medicalstudystatus'
+    autoload :AdministrativeArea, 'mida_vocabulary/vocabularies/schemaorg/administrativearea'
 
     # A medical study is an umbrella type covering all kinds of research studies relating to human medicine or health, including observational studies and interventional trials and registries, randomized, controlled or not. When the specific type of study is known, use one of the extensions of this type, such as MedicalTrial or MedicalObservationalStudy. Also, note that this type should be used to mark up data that describes the study itself; to tag an article that publishes the results of a study, use MedicalScholarlyArticle. Note: use the code property of MedicalEntity to store study IDs, e.g. clinicaltrials.gov ID.
     class MedicalStudy < Mida::Vocabulary
       itemtype %r{http://schema.org/MedicalStudy}i
       include_vocabulary Mida::SchemaOrg::MedicalEntity
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # Expected or actual outcomes of the study.
+      has_many 'outcome'
+
+      # Any characteristics of the population used in the study, e.g. 'males under 65'.
+      has_many 'population'
+
+      # Sponsor of the study.
+      has_many 'sponsor' do
+        extract Mida::SchemaOrg::Organization
+        extract Mida::DataType::Text
+      end
+
+      # The status of the study (enumerated).
+      has_many 'status' do
+        extract Mida::SchemaOrg::MedicalStudyStatus
+      end
+
+      # The location in which the study is taking/took place.
+      has_many 'studyLocation' do
+        extract Mida::SchemaOrg::AdministrativeArea
+        extract Mida::DataType::Text
+      end
+
+      # A subject of the study, i.e. one of the medical conditions, therapies, devices, drugs, etc. investigated by the study.
+      has_many 'studySubject' do
+        extract Mida::SchemaOrg::MedicalEntity
+        extract Mida::DataType::Text
+      end
     end
 
   end

data/lib/mida_vocabulary/vocabularies/schemaorg/medicaltest.rb

@@ -5,12 +5,43 @@ module Mida
 
     autoload :MedicalEntity, 'mida_vocabulary/vocabularies/schemaorg/medicalentity'
     autoload :Thing, 'mida_vocabulary/vocabularies/schemaorg/thing'
+    autoload :Drug, 'mida_vocabulary/vocabularies/schemaorg/drug'
+    autoload :MedicalSign, 'mida_vocabulary/vocabularies/schemaorg/medicalsign'
+    autoload :MedicalCondition, 'mida_vocabulary/vocabularies/schemaorg/medicalcondition'
+    autoload :MedicalDevice, 'mida_vocabulary/vocabularies/schemaorg/medicaldevice'
 
     # Any medical test, typically performed for diagnostic purposes.
     class MedicalTest < Mida::Vocabulary
       itemtype %r{http://schema.org/MedicalTest}i
       include_vocabulary Mida::SchemaOrg::MedicalEntity
       include_vocabulary Mida::SchemaOrg::Thing
+
+      # Drugs that affect the test's results.
+      has_many 'affectedBy' do
+        extract Mida::SchemaOrg::Drug
+        extract Mida::DataType::Text
+      end
+
+      # Range of acceptable values for a typical patient, when applicable.
+      has_many 'normalRange'
+
+      # A sign detected by the test.
+      has_many 'signDetected' do
+        extract Mida::SchemaOrg::MedicalSign
+        extract Mida::DataType::Text
+      end
+
+      # A condition the test is used to diagnose.
+      has_many 'usedToDiagnose' do
+        extract Mida::SchemaOrg::MedicalCondition
+        extract Mida::DataType::Text
+      end
+
+      # Device used to perform the test.
+      has_many 'usesDevice' do
+        extract Mida::SchemaOrg::MedicalDevice
+        extract Mida::DataType::Text
+      end
     end
 
   end