RubyGems - metamri - Versions diffs - 0.1.0 → 0.1.4 - Mend

metamri 0.1.0 → 0.1.4

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (11) hide show

data/.gitignore +3 -0
data/VERSION +1 -1
data/bin/alz.visit1.scan.log +605 -0
data/bin/wrap140.scan.log +111 -0
data/lib/nifti_builder.rb +28 -0
data/lib/raw_image_dataset.rb +49 -7
data/lib/raw_image_file.rb +1 -1
data/lib/visit_raw_data_directory.rb +84 -1
data/metamri.gemspec +7 -4
data/test/nifti_builder_spec.rb +85 -0
metadata +7 -2

data/.gitignore CHANGED Viewed

@@ -1,3 +1,6 @@
 *.log
 *.gem
 ._*
+.idea
+*~

data/VERSION CHANGED Viewed

	@@ -1 +1 @@
1	- 0.1.0
1	+ 0.1.4

data/bin/alz.visit1.scan.log ADDED Viewed

@@ -0,0 +1,605 @@
+# Logfile created on Wed Oct 28 11:42:37 -0500 2009 by logger.rb/22285
+E, [2009-10-28T11:46:28.625449 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz065... skipping.
+E, [2009-10-28T11:46:28.640191 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz065/raw:
+E, [2009-10-28T11:46:29.749197 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz001... skipping.
+E, [2009-10-28T11:46:29.758521 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz001/raw:
+E, [2009-10-28T11:46:29.831370 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz003... skipping.
+E, [2009-10-28T11:46:29.834961 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:29.915357 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz004... skipping.
+E, [2009-10-28T11:46:29.919177 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz004/anatomicals/S1:
+E, [2009-10-28T11:46:29.998764 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz005... skipping.
+E, [2009-10-28T11:46:30.002652 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz005/anatomicals/S1:
+E, [2009-10-28T11:46:30.082063 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz006... skipping.
+E, [2009-10-28T11:46:30.085848 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz006/anatomicals/S1:
+E, [2009-10-28T11:46:30.473206 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz007... skipping.
+E, [2009-10-28T11:46:30.477111 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:30.973478 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz008... skipping.
+E, [2009-10-28T11:46:30.977347 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:31.057161 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz009... skipping.
+E, [2009-10-28T11:46:31.061044 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz009/anatomicals/S1:
+E, [2009-10-28T11:46:31.223208 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz010... skipping.
+E, [2009-10-28T11:46:31.227192 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:31.391657 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz011... skipping.
+E, [2009-10-28T11:46:31.395835 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz011/anatomicals/S3:
+E, [2009-10-28T11:46:31.473904 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz012... skipping.
+E, [2009-10-28T11:46:31.478039 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz012/anatomicals/S1:
+E, [2009-10-28T11:46:31.640691 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz013... skipping.
+E, [2009-10-28T11:46:31.644934 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz013/anatomicals/S3:
+E, [2009-10-28T11:46:31.723959 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz014... skipping.
+E, [2009-10-28T11:46:31.728127 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz014/anatomicals/S1:
+E, [2009-10-28T11:46:31.890430 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz015... skipping.
+E, [2009-10-28T11:46:31.894579 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz015/anatomicals/S3:
+E, [2009-10-28T11:46:31.973448 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz016... skipping.
+E, [2009-10-28T11:46:31.977526 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:32.141056 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz017... skipping.
+E, [2009-10-28T11:46:32.145171 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz017/anatomicals/S3:
+E, [2009-10-28T11:46:32.223427 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz018... skipping.
+E, [2009-10-28T11:46:32.227364 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:32.391166 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz019... skipping.
+E, [2009-10-28T11:46:32.395519 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz019/anatomicals/S3:
+E, [2009-10-28T11:46:32.504398 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz020... skipping.
+E, [2009-10-28T11:46:32.508445 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:32.559138 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz021... skipping.
+E, [2009-10-28T11:46:32.563419 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz021/anatomicals/S1:
+E, [2009-10-28T11:46:32.723727 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz023... skipping.
+E, [2009-10-28T11:46:32.728053 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz023/anatomicals/S3:
+E, [2009-10-28T11:46:32.806979 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz025... skipping.
+E, [2009-10-28T11:46:32.811255 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:32.890277 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz026... skipping.
+E, [2009-10-28T11:46:32.894698 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz026/anatomicals/FAST3:
+E, [2009-10-28T11:46:32.973699 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz027... skipping.
+E, [2009-10-28T11:46:32.977939 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:33.057059 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz028... skipping.
+E, [2009-10-28T11:46:33.061383 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:33.141338 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz029... skipping.
+E, [2009-10-28T11:46:33.145830 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz029/anatomicals/S1:
+E, [2009-10-28T11:46:33.223781 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz030... skipping.
+E, [2009-10-28T11:46:33.227790 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:33.307167 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz031... skipping.
+E, [2009-10-28T11:46:33.311243 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:33.390503 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz032... skipping.
+E, [2009-10-28T11:46:33.394944 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:33.473870 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz033... skipping.
+E, [2009-10-28T11:46:33.478141 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:33.557247 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz034... skipping.
+E, [2009-10-28T11:46:33.561583 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:33.724802 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz035... skipping.
+E, [2009-10-28T11:46:33.729219 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz035/anatomicals/S3:
+E, [2009-10-28T11:46:33.891435 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz036... skipping.
+E, [2009-10-28T11:46:33.895877 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz036/anatomicals/S3:
+E, [2009-10-28T11:46:34.058533 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz037... skipping.
+E, [2009-10-28T11:46:34.063307 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz037/anatomicals/S3:
+E, [2009-10-28T11:46:34.141910 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz039_A... skipping.
+E, [2009-10-28T11:46:34.146514 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:34.225080 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz039_B... skipping.
+E, [2009-10-28T11:46:34.229947 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz039_B/anatomicals/S1:
+E, [2009-10-28T11:46:34.308547 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz040... skipping.
+E, [2009-10-28T11:46:34.313412 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz040/anatomicals/S1:
+E, [2009-10-28T11:46:34.475189 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz041... skipping.
+E, [2009-10-28T11:46:34.480049 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz041/anatomicals/S3:
+E, [2009-10-28T11:46:34.558646 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz042... skipping.
+E, [2009-10-28T11:46:34.563747 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz042/anatomicals/S1:
+E, [2009-10-28T11:46:34.641845 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz043... skipping.
+E, [2009-10-28T11:46:34.649953 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz043/anatomicals/S1:
+E, [2009-10-28T11:46:34.808573 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz044... skipping.
+E, [2009-10-28T11:46:34.813357 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz044/anatomicals/S3:
+E, [2009-10-28T11:46:34.891904 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz045... skipping.
+E, [2009-10-28T11:46:34.896800 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz045/anatomicals/S1:
+E, [2009-10-28T11:46:34.974428 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz046... skipping.
+E, [2009-10-28T11:46:34.979033 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz046/anatomicals/S1:
+E, [2009-10-28T11:46:35.059375 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz047... skipping.
+E, [2009-10-28T11:46:35.063996 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz047/anatomicals/S1:
+E, [2009-10-28T11:46:35.142261 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz048... skipping.
+E, [2009-10-28T11:46:35.147207 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz048/anatomicals/S1:
+E, [2009-10-28T11:46:35.308698 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz049... skipping.
+E, [2009-10-28T11:46:35.313837 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz049/anatomicals/S3:
+E, [2009-10-28T11:46:35.475595 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz050... skipping.
+E, [2009-10-28T11:46:35.480964 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz050/anatomicals/S3:
+E, [2009-10-28T11:46:36.061350 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz051... skipping.
+E, [2009-10-28T11:46:36.066404 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz051/anatomicals/S5:
+E, [2009-10-28T11:46:36.561263 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz052... skipping.
+E, [2009-10-28T11:46:36.592584 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz052/raw:
+E, [2009-10-28T11:46:36.645115 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz053... skipping.
+E, [2009-10-28T11:46:36.660023 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz053/anatomicals/S1:
+E, [2009-10-28T11:46:36.810991 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz054... skipping.
+E, [2009-10-28T11:46:36.815944 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz054/anatomicals/S3:
+E, [2009-10-28T11:46:36.977802 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz055... skipping.
+E, [2009-10-28T11:46:36.982373 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz055/anatomicals/S3:
+E, [2009-10-28T11:46:37.061427 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz056_A... skipping.
+E, [2009-10-28T11:46:37.066316 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:37.228147 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz056_B... skipping.
+E, [2009-10-28T11:46:37.233209 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:37.394763 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz057... skipping.
+E, [2009-10-28T11:46:37.400135 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz057/anatomicals/S3:
+E, [2009-10-28T11:46:37.478038 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz058... skipping.
+E, [2009-10-28T11:46:37.483800 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz058/anatomicals/S1:
+E, [2009-10-28T11:46:37.646026 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz059... skipping.
+E, [2009-10-28T11:46:37.651473 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz059/anatomicals/S3:
+E, [2009-10-28T11:46:37.811701 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz060... skipping.
+E, [2009-10-28T11:46:37.817371 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz060/anatomicals/S3:
+E, [2009-10-28T11:46:37.895252 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz061_A... skipping.
+E, [2009-10-28T11:46:37.901041 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:38.098374 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz066... skipping.
+E, [2009-10-28T11:46:38.103975 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:38.144143 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz067... skipping.
+E, [2009-10-28T11:46:38.149449 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:38.228870 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz068... skipping.
+E, [2009-10-28T11:46:38.237404 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz068/anatomicals/S1:
+E, [2009-10-28T11:46:38.312138 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz071... skipping.
+E, [2009-10-28T11:46:38.317610 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz071/anatomicals/S1:
+E, [2009-10-28T11:46:38.395679 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz072... skipping.
+E, [2009-10-28T11:46:38.400816 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz072/anatomicals/S1:
+E, [2009-10-28T11:46:38.479335 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz073... skipping.
+E, [2009-10-28T11:46:38.483485 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz073/anatomicals/S1:
+E, [2009-10-28T11:46:38.562212 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz074... skipping.
+E, [2009-10-28T11:46:38.567924 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz074/anatomicals/S1:
+E, [2009-10-28T11:46:38.645380 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz075... skipping.
+E, [2009-10-28T11:46:38.650883 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz075/anatomicals/S1:
+E, [2009-10-28T11:46:38.811147 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz076... skipping.
+E, [2009-10-28T11:46:38.816776 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:38.977911 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz077... skipping.
+E, [2009-10-28T11:46:38.983472 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:39.144572 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz078... skipping.
+E, [2009-10-28T11:46:39.150381 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:39.228476 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz079... skipping.
+E, [2009-10-28T11:46:39.241061 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz079/anatomicals/S1:
+E, [2009-10-28T11:46:39.311143 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz080... skipping.
+E, [2009-10-28T11:46:39.316768 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:39.478012 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz081... skipping.
+E, [2009-10-28T11:46:39.483666 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:39.644764 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz082... skipping.
+E, [2009-10-28T11:46:39.650319 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:39.811445 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz084... skipping.
+E, [2009-10-28T11:46:39.816705 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:39.978190 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz085... skipping.
+E, [2009-10-28T11:46:39.983889 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:40.144989 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz086... skipping.
+E, [2009-10-28T11:46:40.151029 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:40.229125 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz087... skipping.
+E, [2009-10-28T11:46:40.238224 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz087/anatomicals/S1:
+E, [2009-10-28T11:46:40.395063 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz088... skipping.
+E, [2009-10-28T11:46:40.400628 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:40.561772 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz089... skipping.
+E, [2009-10-28T11:46:40.567270 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:40.728503 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz091... skipping.
+E, [2009-10-28T11:46:40.734164 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:40.895173 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz092... skipping.
+E, [2009-10-28T11:46:40.900811 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:41.061970 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz093... skipping.
+E, [2009-10-28T11:46:41.067758 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:41.228696 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz094... skipping.
+E, [2009-10-28T11:46:41.234399 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:41.395350 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz096... skipping.
+E, [2009-10-28T11:46:41.401040 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:41.562084 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz097... skipping.
+E, [2009-10-28T11:46:41.567691 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:41.728803 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz098... skipping.
+E, [2009-10-28T11:46:41.734598 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:41.895452 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz099... skipping.
+E, [2009-10-28T11:46:41.901232 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:41.980330 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz100... skipping.
+E, [2009-10-28T11:46:41.985969 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz100/anatomicals/S1:
+E, [2009-10-28T11:46:42.063404 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz101_A... skipping.
+E, [2009-10-28T11:46:42.068929 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:42.230138 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz101_B... skipping.
+E, [2009-10-28T11:46:42.235831 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:42.395916 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz102... skipping.
+E, [2009-10-28T11:46:42.401980 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:42.562672 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz103... skipping.
+E, [2009-10-28T11:46:42.568606 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:42.729241 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz105... skipping.
+E, [2009-10-28T11:46:42.735255 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:42.813472 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz106... skipping.
+E, [2009-10-28T11:46:42.819458 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz106/anatomicals/S1:
+E, [2009-10-28T11:46:42.979355 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz107... skipping.
+E, [2009-10-28T11:46:42.985140 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:43.063185 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz108... skipping.
+E, [2009-10-28T11:46:43.072087 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz108/anatomicals/S1:
+E, [2009-10-28T11:46:43.146002 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz109... skipping.
+E, [2009-10-28T11:46:43.152052 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz109/anatomicals/S1:
+E, [2009-10-28T11:46:43.312648 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz110... skipping.
+E, [2009-10-28T11:46:43.318191 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:43.479421 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz111... skipping.
+E, [2009-10-28T11:46:43.485340 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:43.646115 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz112... skipping.
+E, [2009-10-28T11:46:43.651974 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:43.729867 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz113... skipping.
+E, [2009-10-28T11:46:43.735691 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:43.813776 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz114... skipping.
+E, [2009-10-28T11:46:43.819630 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz114/anatomicals/S1:
+E, [2009-10-28T11:46:43.979563 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz115... skipping.
+E, [2009-10-28T11:46:43.985066 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:44.063879 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz116... skipping.
+E, [2009-10-28T11:46:44.072010 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz116/anatomicals/S1:
+E, [2009-10-28T11:46:44.147006 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz117... skipping.
+E, [2009-10-28T11:46:44.154949 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz117/anatomicals/S1:
+E, [2009-10-28T11:46:44.230631 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz118... skipping.
+E, [2009-10-28T11:46:44.262635 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz118/anatomicals/S1:
+E, [2009-10-28T11:46:44.313116 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz119... skipping.
+E, [2009-10-28T11:46:44.319142 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:44.479660 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz120... skipping.
+E, [2009-10-28T11:46:44.485252 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:44.646393 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz121... skipping.
+E, [2009-10-28T11:46:44.652398 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:44.813069 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz122... skipping.
+E, [2009-10-28T11:46:44.818796 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:44.979808 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz123... skipping.
+E, [2009-10-28T11:46:44.985734 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:45.146698 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz124... skipping.
+E, [2009-10-28T11:46:45.152903 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:45.313366 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz125... skipping.
+E, [2009-10-28T11:46:45.319796 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:45.480034 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz126... skipping.
+E, [2009-10-28T11:46:45.486171 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:45.647545 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz127... skipping.
+E, [2009-10-28T11:46:45.653072 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:45.813513 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz128... skipping.
+E, [2009-10-28T11:46:45.819975 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:45.980171 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz129... skipping.
+E, [2009-10-28T11:46:45.986671 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:46.147025 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz130... skipping.
+E, [2009-10-28T11:46:46.153554 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:46.313771 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz131... skipping.
+E, [2009-10-28T11:46:46.320198 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:46.480526 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz132... skipping.
+E, [2009-10-28T11:46:46.487112 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:46.564471 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz133... skipping.
+E, [2009-10-28T11:46:46.574293 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz133/anatomicals/S1:
+E, [2009-10-28T11:46:46.730446 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz134... skipping.
+E, [2009-10-28T11:46:46.736679 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:46.897305 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz135... skipping.
+E, [2009-10-28T11:46:46.903851 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:46.980367 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz136... skipping.
+E, [2009-10-28T11:46:46.986591 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:47.185558 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz137... skipping.
+E, [2009-10-28T11:46:47.191969 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:47.232126 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz138... skipping.
+E, [2009-10-28T11:46:47.238688 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz138/anatomicals/S1:
+E, [2009-10-28T11:46:47.262874 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz139... skipping.
+E, [2009-10-28T11:46:47.268908 #1039] ERROR -- : Exception message: No datasets could be scanned for directory /Data/vtrak1/raw/alz_2000/alz139
+E, [2009-10-28T11:46:47.318904 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz140... skipping.
+E, [2009-10-28T11:46:47.329430 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz140/anatomicals/S1:
+E, [2009-10-28T11:46:47.480641 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz141... skipping.
+E, [2009-10-28T11:46:47.487264 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:47.565944 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz142... skipping.
+E, [2009-10-28T11:46:47.589713 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz142/anatomicals/S1:
+E, [2009-10-28T11:46:47.649200 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz143... skipping.
+E, [2009-10-28T11:46:47.655955 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz143/anatomicals/S1:
+E, [2009-10-28T11:46:47.732493 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz144... skipping.
+E, [2009-10-28T11:46:47.740666 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz144/anatomicals/S1:
+E, [2009-10-28T11:46:47.897569 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz145... skipping.
+E, [2009-10-28T11:46:47.901248 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:48.065058 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz146... skipping.
+E, [2009-10-28T11:46:48.068695 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:48.231689 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz147... skipping.
+E, [2009-10-28T11:46:48.235326 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:48.397635 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz148... skipping.
+E, [2009-10-28T11:46:48.401488 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:48.565226 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz149... skipping.
+E, [2009-10-28T11:46:48.569128 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:48.731113 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz150... skipping.
+E, [2009-10-28T11:46:48.735029 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:48.898624 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz151... skipping.
+E, [2009-10-28T11:46:48.902411 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:49.065570 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz152... skipping.
+E, [2009-10-28T11:46:49.069606 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:49.232174 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz153... skipping.
+E, [2009-10-28T11:46:49.236247 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:49.398730 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz154... skipping.
+E, [2009-10-28T11:46:49.402656 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:49.565550 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz158... skipping.
+E, [2009-10-28T11:46:49.569537 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:49.732577 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz159... skipping.
+E, [2009-10-28T11:46:49.736687 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:49.898888 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz160... skipping.
+E, [2009-10-28T11:46:49.903071 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:50.066529 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz162... skipping.
+E, [2009-10-28T11:46:50.070779 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz162/anatomicals/S2:
+E, [2009-10-28T11:46:50.232554 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz163... skipping.
+E, [2009-10-28T11:46:50.236672 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:50.399271 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz164... skipping.
+E, [2009-10-28T11:46:50.403316 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:50.565989 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz165... skipping.
+E, [2009-10-28T11:46:50.570207 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:50.648667 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz167... skipping.
+E, [2009-10-28T11:46:50.652960 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz167/anatomicals/S1:
+E, [2009-10-28T11:46:50.815266 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz168... skipping.
+E, [2009-10-28T11:46:50.819550 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:50.910318 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz169... skipping.
+E, [2009-10-28T11:46:50.914503 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz169/anatomicals/S1:
+E, [2009-10-28T11:46:51.065311 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz170... skipping.
+E, [2009-10-28T11:46:51.069444 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:51.231977 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz171... skipping.
+E, [2009-10-28T11:46:51.236094 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:51.316441 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz172... skipping.
+E, [2009-10-28T11:46:51.320546 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz172/anatomicals/S1:
+E, [2009-10-28T11:46:51.481993 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz173... skipping.
+E, [2009-10-28T11:46:51.486196 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:51.649604 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz174... skipping.
+E, [2009-10-28T11:46:51.653582 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:51.816106 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz175... skipping.
+E, [2009-10-28T11:46:51.820488 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:51.982919 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz176... skipping.
+E, [2009-10-28T11:46:51.987162 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:52.149644 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz177... skipping.
+E, [2009-10-28T11:46:52.154065 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:52.399964 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz178... skipping.
+E, [2009-10-28T11:46:52.404406 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:52.566556 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz179... skipping.
+E, [2009-10-28T11:46:52.570794 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:52.732519 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz180... skipping.
+E, [2009-10-28T11:46:52.736939 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:52.816758 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz181... skipping.
+E, [2009-10-28T11:46:52.821155 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz181/anatomicals/S1:
+E, [2009-10-28T11:46:52.900044 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz182... skipping.
+E, [2009-10-28T11:46:52.904347 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz182/anatomicals/S1:
+E, [2009-10-28T11:46:52.983484 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz183... skipping.
+E, [2009-10-28T11:46:52.987844 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz183/anatomicals/S1:
+E, [2009-10-28T11:46:53.149265 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz184... skipping.
+E, [2009-10-28T11:46:53.153733 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:53.315967 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz185... skipping.
+E, [2009-10-28T11:46:53.320386 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:53.483586 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz186... skipping.
+E, [2009-10-28T11:46:53.488279 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:53.566719 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz187... skipping.
+E, [2009-10-28T11:46:53.573735 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz187/anatomicals/S1:
+E, [2009-10-28T11:46:53.650176 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz188... skipping.
+E, [2009-10-28T11:46:53.655169 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz188/anatomicals/S1:
+E, [2009-10-28T11:46:53.733533 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz189... skipping.
+E, [2009-10-28T11:46:53.738131 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz189/anatomicals/S1:
+E, [2009-10-28T11:46:53.899339 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz190... skipping.
+E, [2009-10-28T11:46:53.904025 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:54.066120 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz191... skipping.
+E, [2009-10-28T11:46:54.070715 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:54.150480 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz192... skipping.
+E, [2009-10-28T11:46:54.155147 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz192/anatomicals/S1:
+E, [2009-10-28T11:46:54.317377 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz193... skipping.
+E, [2009-10-28T11:46:54.322062 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:54.483124 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz194... skipping.
+E, [2009-10-28T11:46:54.487972 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:54.649917 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz195... skipping.
+E, [2009-10-28T11:46:54.654599 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:54.816648 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz196... skipping.
+E, [2009-10-28T11:46:54.821759 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:54.984106 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz197... skipping.
+E, [2009-10-28T11:46:54.988932 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:55.173613 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz198... skipping.
+E, [2009-10-28T11:46:55.178313 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:55.235526 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz199... skipping.
+E, [2009-10-28T11:46:55.240037 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz199/anatomicals/S1:
+E, [2009-10-28T11:46:55.318593 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz200... skipping.
+E, [2009-10-28T11:46:55.323475 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz200/anatomicals/S1:
+E, [2009-10-28T11:46:55.483265 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz201... skipping.
+E, [2009-10-28T11:46:55.488119 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:55.649969 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz202... skipping.
+E, [2009-10-28T11:46:55.654755 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:55.816663 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz203... skipping.
+E, [2009-10-28T11:46:55.821428 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:55.900795 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz204... skipping.
+E, [2009-10-28T11:46:55.906111 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz204/anatomicals/S1:
+E, [2009-10-28T11:46:56.066786 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz205... skipping.
+E, [2009-10-28T11:46:56.071555 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:56.234368 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz206... skipping.
+E, [2009-10-28T11:46:56.239195 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:56.400198 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz207... skipping.
+E, [2009-10-28T11:46:56.405103 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:56.567089 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz208... skipping.
+E, [2009-10-28T11:46:56.572001 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:56.733797 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz209... skipping.
+E, [2009-10-28T11:46:56.738644 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:56.900487 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz210... skipping.
+E, [2009-10-28T11:46:56.905299 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:57.068139 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz211... skipping.
+E, [2009-10-28T11:46:57.072978 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:57.151734 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz212... skipping.
+E, [2009-10-28T11:46:57.156658 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:57.318098 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz213... skipping.
+E, [2009-10-28T11:46:57.323306 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:57.401246 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz214... skipping.
+E, [2009-10-28T11:46:57.410757 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz214/anatomicals/S1_3-Plane:
+E, [2009-10-28T11:46:57.484684 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz215... skipping.
+E, [2009-10-28T11:46:57.490209 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz215/anatomicals/S1_3-Plane:
+E, [2009-10-28T11:46:57.650649 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz216... skipping.
+E, [2009-10-28T11:46:57.656344 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:57.817342 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz217... skipping.
+E, [2009-10-28T11:46:57.822765 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:57.984091 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz218... skipping.
+E, [2009-10-28T11:46:58.017420 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:58.069657 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz219... skipping.
+E, [2009-10-28T11:46:58.075385 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz219/anatomicals/S1_3-Plane:
+E, [2009-10-28T11:46:58.234440 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz220... skipping.
+E, [2009-10-28T11:46:58.239792 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:58.318557 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz221... skipping.
+E, [2009-10-28T11:46:58.323982 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz221/anatomicals/S1_3-Plane:
+E, [2009-10-28T11:46:58.484499 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz222... skipping.
+E, [2009-10-28T11:46:58.490132 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:58.651260 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz223... skipping.
+E, [2009-10-28T11:46:58.657018 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:58.817928 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz224... skipping.
+E, [2009-10-28T11:46:58.823656 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:58.901640 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz225... skipping.
+E, [2009-10-28T11:46:58.907628 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz225/anatomicals/S1_3-Plane:
+E, [2009-10-28T11:46:59.067865 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz226... skipping.
+E, [2009-10-28T11:46:59.073068 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:59.152658 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz227... skipping.
+E, [2009-10-28T11:46:59.158520 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz227/anatomicals/S1_3-Plane:
+E, [2009-10-28T11:46:59.235493 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz228... skipping.
+E, [2009-10-28T11:46:59.240967 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz228/anatomicals/S1_3-Plane:
+E, [2009-10-28T11:46:59.319004 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz229... skipping.
+E, [2009-10-28T11:46:59.324667 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz229/anatomicals/S1_3-Plane:
+E, [2009-10-28T11:46:59.484484 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz230... skipping.
+E, [2009-10-28T11:46:59.490046 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:59.569142 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz231... skipping.
+E, [2009-10-28T11:46:59.574761 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz231/anatomicals/S1_FGRE:
+E, [2009-10-28T11:46:59.652015 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz232... skipping.
+E, [2009-10-28T11:46:59.657711 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz232/anatomicals/S1_FGRE:
+E, [2009-10-28T11:46:59.817890 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz233... skipping.
+E, [2009-10-28T11:46:59.823599 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:46:59.902249 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz234... skipping.
+E, [2009-10-28T11:46:59.909558 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz234/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:00.068130 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz236... skipping.
+E, [2009-10-28T11:47:00.073992 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:00.152325 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz237... skipping.
+E, [2009-10-28T11:47:00.158176 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz237/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:00.318167 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz238... skipping.
+E, [2009-10-28T11:47:00.323828 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:00.484820 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz239... skipping.
+E, [2009-10-28T11:47:00.490467 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:00.569135 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz240... skipping.
+E, [2009-10-28T11:47:00.574659 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz240/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:00.652267 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz241... skipping.
+E, [2009-10-28T11:47:00.657865 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz241/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:00.818273 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz242... skipping.
+E, [2009-10-28T11:47:00.823760 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:00.902428 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz243... skipping.
+E, [2009-10-28T11:47:00.908206 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz243/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:01.068388 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz244... skipping.
+E, [2009-10-28T11:47:01.073905 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:01.152807 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz245... skipping.
+E, [2009-10-28T11:47:01.158588 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz245/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:01.318504 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz246... skipping.
+E, [2009-10-28T11:47:01.337987 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:01.403565 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz247... skipping.
+E, [2009-10-28T11:47:01.413182 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz247/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:01.486860 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz248... skipping.
+E, [2009-10-28T11:47:01.492636 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz248/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:01.569682 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz249... skipping.
+E, [2009-10-28T11:47:01.579592 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz249/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:01.652646 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz250... skipping.
+E, [2009-10-28T11:47:01.658532 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz250/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:01.735115 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz251... skipping.
+E, [2009-10-28T11:47:01.740969 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:01.901889 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz252... skipping.
+E, [2009-10-28T11:47:01.907872 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:02.068621 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz253... skipping.
+E, [2009-10-28T11:47:02.074816 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:02.235358 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz254... skipping.
+E, [2009-10-28T11:47:02.241211 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:02.318611 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz255... skipping.
+E, [2009-10-28T11:47:02.324419 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:02.485426 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz256... skipping.
+E, [2009-10-28T11:47:02.491301 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:02.569627 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz257... skipping.
+E, [2009-10-28T11:47:02.575749 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz257/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:02.653108 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz258... skipping.
+E, [2009-10-28T11:47:02.659197 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz258/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:02.736304 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz259... skipping.
+E, [2009-10-28T11:47:02.742395 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz259/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:02.902626 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz260... skipping.
+E, [2009-10-28T11:47:02.909041 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:03.069345 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz261... skipping.
+E, [2009-10-28T11:47:03.075730 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:03.153543 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz262... skipping.
+E, [2009-10-28T11:47:03.159679 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz262/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:03.319265 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz263... skipping.
+E, [2009-10-28T11:47:03.325323 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:03.486063 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz264... skipping.
+E, [2009-10-28T11:47:03.492227 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:03.652715 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz265... skipping.
+E, [2009-10-28T11:47:03.659120 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:03.824189 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz266... skipping.
+E, [2009-10-28T11:47:03.830021 #1039] ERROR -- : Exception message:
+E, [2009-10-28T11:47:03.904290 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz267... skipping.
+E, [2009-10-28T11:47:03.910482 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz267/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:03.987764 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz268... skipping.
+E, [2009-10-28T11:47:03.998488 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz268/anatomicals/S1_FGRE:
+E, [2009-10-28T11:47:04.070754 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz269... skipping.
+E, [2009-10-28T11:47:04.076922 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz269/anatomicals/S1_FGRE:
+E, [2009-10-28T11:51:30.673950 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz056... skipping.
+E, [2009-10-28T11:51:30.678970 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz056/raw:
+E, [2009-10-28T11:51:31.172978 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz061... skipping.
+E, [2009-10-28T11:51:31.179191 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:31.256272 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz101... skipping.
+E, [2009-10-28T11:51:31.262629 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:31.339560 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz061_B... skipping.
+E, [2009-10-28T11:51:31.345825 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:31.422862 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz090... skipping.
+E, [2009-10-28T11:51:31.429272 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:31.589111 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz064... skipping.
+E, [2009-10-28T11:51:31.595428 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:31.673200 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz065... skipping.
+E, [2009-10-28T11:51:31.679364 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:31.759256 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz001... skipping.
+E, [2009-10-28T11:51:31.765327 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:31.922315 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz003... skipping.
+E, [2009-10-28T11:51:31.928709 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:32.007070 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz004... skipping.
+E, [2009-10-28T11:51:32.013702 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz004/anatomicals/S1:
+E, [2009-10-28T11:51:32.173308 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz005... skipping.
+E, [2009-10-28T11:51:32.179871 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:32.261873 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz006... skipping.
+E, [2009-10-28T11:51:32.268293 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:32.340170 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz007... skipping.
+E, [2009-10-28T11:51:32.346498 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:32.423332 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz008... skipping.
+E, [2009-10-28T11:51:32.429438 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:32.507891 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz009... skipping.
+E, [2009-10-28T11:51:32.514132 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:32.594932 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz010... skipping.
+E, [2009-10-28T11:51:32.601342 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:32.676719 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz011... skipping.
+E, [2009-10-28T11:51:32.683044 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:32.840148 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz012... skipping.
+E, [2009-10-28T11:51:32.846928 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:32.925335 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz013... skipping.
+E, [2009-10-28T11:51:32.931893 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:33.010587 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz014... skipping.
+E, [2009-10-28T11:51:33.017360 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:33.090321 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz015... skipping.
+E, [2009-10-28T11:51:33.097112 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:33.173484 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz016... skipping.
+E, [2009-10-28T11:51:33.176993 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:33.257741 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz017... skipping.
+E, [2009-10-28T11:51:33.261441 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:33.340540 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz018... skipping.
+E, [2009-10-28T11:51:33.345650 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz018/anatomicals/S1:
+E, [2009-10-28T11:51:33.423767 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz019... skipping.
+E, [2009-10-28T11:51:33.427584 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:33.505987 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz020... skipping.
+E, [2009-10-28T11:51:33.509785 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:33.590579 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz021... skipping.
+E, [2009-10-28T11:51:33.594726 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:33.673902 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz023... skipping.
+E, [2009-10-28T11:51:33.677682 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:33.757057 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz025... skipping.
+E, [2009-10-28T11:51:33.764626 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz025/anatomicals/S1:
+E, [2009-10-28T11:51:33.848425 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz026... skipping.
+E, [2009-10-28T11:51:33.852332 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:33.924177 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz027... skipping.
+E, [2009-10-28T11:51:33.928277 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz027/anatomicals/S1:
+E, [2009-10-28T11:51:34.007171 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz028... skipping.
+E, [2009-10-28T11:51:34.011006 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz028/anatomicals/S1:
+E, [2009-10-28T11:51:34.090515 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz029... skipping.
+E, [2009-10-28T11:51:34.094433 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:34.173688 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz030... skipping.
+E, [2009-10-28T11:51:34.177899 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz030/anatomicals/S1:
+E, [2009-10-28T11:51:34.257100 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz031... skipping.
+E, [2009-10-28T11:51:34.261342 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz031/anatomicals/S1:
+E, [2009-10-28T11:51:34.340428 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz032... skipping.
+E, [2009-10-28T11:51:34.348552 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz032/anatomicals/S1:
+E, [2009-10-28T11:51:34.423877 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz033... skipping.
+E, [2009-10-28T11:51:34.428241 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz033/anatomicals/S1:
+E, [2009-10-28T11:51:34.507405 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz034... skipping.
+E, [2009-10-28T11:51:34.511484 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz034/anatomicals/S1:
+E, [2009-10-28T11:51:34.592093 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz035... skipping.
+E, [2009-10-28T11:51:34.596142 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:34.674047 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz036... skipping.
+E, [2009-10-28T11:51:34.678353 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:34.757268 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz037... skipping.
+E, [2009-10-28T11:51:34.761547 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:34.924904 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz039_A... skipping.
+E, [2009-10-28T11:51:34.928959 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz039_A/anatomicals/S5:
+E, [2009-10-28T11:51:35.008264 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz039_B... skipping.
+E, [2009-10-28T11:51:35.012411 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz039_B/anatomicals/S1:
+E, [2009-10-28T11:51:35.090808 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz040... skipping.
+E, [2009-10-28T11:51:35.095134 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:35.174245 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz041... skipping.
+E, [2009-10-28T11:51:35.178585 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:35.257515 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz042... skipping.
+E, [2009-10-28T11:51:35.262271 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:35.340801 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz043... skipping.
+E, [2009-10-28T11:51:35.345203 #2383] ERROR -- : Exception message:
+E, [2009-10-28T11:51:35.424327 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz044... skipping.
+E, [2009-10-28T11:51:35.428653 #2383] ERROR -- : Exception message:
+E, [2009-10-28T13:11:08.520699 #2717] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz139... skipping.
+E, [2009-10-28T13:11:08.602587 #2717] ERROR -- : Exception message: No datasets could be scanned for directory /Data/vtrak1/raw/alz_2000/alz139

data/bin/wrap140.scan.log ADDED Viewed

@@ -0,0 +1,111 @@
+# Logfile created on Thu Nov 05 12:53:03 -0600 2009 by logger.rb/22285
+E, [2009-11-05T12:53:19.995365 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp001_5917_03042008... skipping.
+E, [2009-11-05T12:53:19.999109 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:20.495643 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp002_5938_03072008... skipping.
+E, [2009-11-05T12:53:20.499581 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:20.579031 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp003_6018_03242008... skipping.
+E, [2009-11-05T12:53:20.582544 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:20.829088 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp004_6104_04072008... skipping.
+E, [2009-11-05T12:53:20.832122 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:20.912302 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp005_6129_04102008... skipping.
+E, [2009-11-05T12:53:20.915813 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:20.995721 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp006_6136_04112008... skipping.
+E, [2009-11-05T12:53:20.999756 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp006_6136_04112008/001:
+E, [2009-11-05T12:53:21.079059 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp007_6181_04182008... skipping.
+E, [2009-11-05T12:53:21.082760 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp007_6181_04182008/001:
+E, [2009-11-05T12:53:21.162494 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp008_6202_04222008... skipping.
+E, [2009-11-05T12:53:21.171955 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp008_6202_04222008/001:
+E, [2009-11-05T12:53:21.245745 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp009_6394_05282008... skipping.
+E, [2009-11-05T12:53:21.249399 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:21.329462 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp010_6426_06032008... skipping.
+E, [2009-11-05T12:53:21.333604 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp010_6426_06032008/001:
+E, [2009-11-05T12:53:21.412560 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp011_6435_06042008... skipping.
+E, [2009-11-05T12:53:21.426048 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp011_6435_06042008/001:
+E, [2009-11-05T12:53:21.495825 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp012_6440_06052008... skipping.
+E, [2009-11-05T12:53:21.499494 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:21.579242 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp013_6468_06102008... skipping.
+E, [2009-11-05T12:53:21.590203 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp013_6468_06102008/001:
+E, [2009-11-05T12:53:21.662447 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp014_6499_06162008... skipping.
+E, [2009-11-05T12:53:21.666391 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:21.745880 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp015_6531_06202008... skipping.
+E, [2009-11-05T12:53:21.749844 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:21.829198 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp016_6532_06202008... skipping.
+E, [2009-11-05T12:53:21.833290 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:21.912634 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp017_6544_06232008... skipping.
+E, [2009-11-05T12:53:21.924735 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp017_6544_06232008/001:
+E, [2009-11-05T12:53:21.995975 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp018_6648_07102008... skipping.
+E, [2009-11-05T12:53:21.999943 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp018_6648_07102008/001:
+E, [2009-11-05T12:53:22.079364 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp019_6660_07112008... skipping.
+E, [2009-11-05T12:53:22.085679 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp019_6660_07112008/001:
+E, [2009-11-05T12:53:22.162983 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp020_6674_07142008... skipping.
+E, [2009-11-05T12:53:22.175616 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp020_6674_07142008/001:
+E, [2009-11-05T12:53:22.255801 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp021_6688_07162008... skipping.
+E, [2009-11-05T12:53:22.260078 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp021_6688_07162008/001:
+E, [2009-11-05T12:53:22.329432 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp022_6736_07232008... skipping.
+E, [2009-11-05T12:53:22.333775 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:22.412936 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp023_6766_07282008... skipping.
+E, [2009-11-05T12:53:22.416974 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp023_6766_07282008/001:
+E, [2009-11-05T12:53:22.496115 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp024_6774_07292008... skipping.
+E, [2009-11-05T12:53:22.500418 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:22.579539 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp025_6796_08012008... skipping.
+E, [2009-11-05T12:53:22.583869 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp025_6796_08012008/001:
+E, [2009-11-05T12:53:22.662921 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp026_6860_08132008... skipping.
+E, [2009-11-05T12:53:22.671562 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp026_6860_08132008/001:
+E, [2009-11-05T12:53:22.746149 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp027_6882_08182008... skipping.
+E, [2009-11-05T12:53:22.750756 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:22.829559 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp028_6898_08022008... skipping.
+E, [2009-11-05T12:53:22.833962 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp028_6898_08022008/001:
+E, [2009-11-05T12:53:22.912860 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp029_6913_08222008... skipping.
+E, [2009-11-05T12:53:22.917161 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:23.001668 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp030_6925_08252008... skipping.
+E, [2009-11-05T12:53:23.006116 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp030_6925_08252008/001:
+E, [2009-11-05T12:53:23.079612 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp031_6933_08262008... skipping.
+E, [2009-11-05T12:53:23.083854 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:23.163032 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp032_6944_08272008... skipping.
+E, [2009-11-05T12:53:23.177538 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp032_6944_08272008/001:
+E, [2009-11-05T12:53:23.246326 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp033_6974_09032008... skipping.
+E, [2009-11-05T12:53:23.250748 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:23.329707 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp034_6980_09042008... skipping.
+E, [2009-11-05T12:53:23.334197 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:23.413118 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp035_7057_09182008... skipping.
+E, [2009-11-05T12:53:23.417648 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp035_7057_09182008/001:
+E, [2009-11-05T12:53:23.496516 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp037_7076_09222008... skipping.
+E, [2009-11-05T12:53:23.506841 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp037_7076_09222008/001:
+E, [2009-11-05T12:53:23.579763 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp038_7173_10092008... skipping.
+E, [2009-11-05T12:53:23.584055 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:23.663078 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp039_7188_10132008... skipping.
+E, [2009-11-05T12:53:23.667739 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:23.746517 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp040_7196_10142008... skipping.
+E, [2009-11-05T12:53:23.750941 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp040_7196_10142008/001:
+E, [2009-11-05T12:53:23.829897 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp041_7242_10222008... skipping.
+E, [2009-11-05T12:53:23.834388 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp041_7242_10222008/001:
+E, [2009-11-05T12:53:23.913203 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp042_7283_10282008... skipping.
+E, [2009-11-05T12:53:23.917831 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:23.996695 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp043_7351_11062008... skipping.
+E, [2009-11-05T12:53:24.001300 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp043_7351_11062008/001:
+E, [2009-11-05T12:53:24.079995 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp045_7560_12112008... skipping.
+E, [2009-11-05T12:53:24.085044 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:24.163290 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp046_7570_12122008... skipping.
+E, [2009-11-05T12:53:24.167985 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp046_7570_12122008/001:
+E, [2009-11-05T12:53:24.246611 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp047_7578_12152008... skipping.
+E, [2009-11-05T12:53:24.251672 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:24.414334 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp048_7614_12222008... skipping.
+E, [2009-11-05T12:53:24.419086 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp048_7614_12222008/002:
+E, [2009-11-05T12:53:24.496678 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp049_7658_01052009... skipping.
+E, [2009-11-05T12:53:24.501519 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:24.580019 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp050_7759_012322009... skipping.
+E, [2009-11-05T12:53:24.584716 #26320] ERROR -- : Exception message:
+E, [2009-11-05T12:53:24.664135 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp051_7886_02162009... skipping.
+E, [2009-11-05T12:53:24.669160 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp051_7886_02162009/001:
+E, [2009-11-05T12:53:24.747599 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp052_7927_02242009... skipping.
+E, [2009-11-05T12:53:24.757115 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp052_7927_02242009/001:
+E, [2009-11-06T09:11:09.829367 #31361] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp046_7570_12122008... skipping.
+E, [2009-11-06T09:11:10.095648 #31361] ERROR -- : Exception message:
+E, [2009-11-06T09:11:11.092551 #31361] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp047_7578_12152008... skipping.
+E, [2009-11-06T09:11:11.108534 #31361] ERROR -- : Exception message:
+E, [2009-11-06T09:11:11.592899 #31361] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp048_7614_12222008... skipping.
+E, [2009-11-06T09:11:11.602532 #31361] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp048_7614_12222008/002:
+E, [2009-11-06T09:11:11.675830 #31361] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp049_7658_01052009... skipping.
+E, [2009-11-06T09:11:11.702457 #31361] ERROR -- : Exception message:
+E, [2009-11-06T09:11:11.759292 #31361] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp050_7759_012322009... skipping.
+E, [2009-11-06T09:11:11.789401 #31361] ERROR -- : Exception message:

data/lib/nifti_builder.rb ADDED Viewed

@@ -0,0 +1,28 @@
+#!/usr/bin/env ruby
+=begin rdoc
+Builds Nifti files from Dicoms.
+=end
+TO3D_CMD = 'to3d'
+module UnknownImageDataset
+  def dataset_to_nifti(nifti_output_directory, nifti_filename, input_options = {} )
+    if input_options.has_key?(:dicom_files)
+      input_files = input_options[:dicom_files].each {|file| file.to_s }.join(' ')
+    elsif input_options.has_key?(:input_directory)
+      input_files = "#{input_options[:input_directory]}/'#{glob}'"
+    else input_files = "#{Dir.tmpdir}/'#{glob}'"
+    end
+    nifti_output_directory = File.join(nifti_output_directory, 'unknown') if input_options[:append_modality_directory]
+    nifti_output_file = File.join(nifti_output_directory, nifti_filename)
+    File.makedirs(nifti_output_directory) unless File.directory?(nifti_output_directory)
+    raise(IOError, "Cannot write to #{nifti_output_directory}") unless File.writable?(nifti_output_directory)
+    nifti_conversion_command = "#{TO3D_CMD} -session #{nifti_output_directory} -prefix #{nifti_filename} #{input_files}"
+    return nifti_conversion_command, nifti_output_file
+  end
+end

data/lib/raw_image_dataset.rb CHANGED Viewed

@@ -1,6 +1,8 @@
 require 'rubygems'
 require 'sqlite3'
+require 'nifti_builder'
+require 'ftools'
 =begin rdoc
 A #Dataset defines a single 3D or 4D image, i.e. either a volume or a time series
@@ -25,8 +27,7 @@ class RawImageDataset
   # the file scanned
   attr_reader :scanned_file
   # the scanner source
-  attr_reader :scanner_source
+  attr_reader :scanner_source
 =begin rdoc
   * dir: The directory containing the files.
@@ -37,10 +38,14 @@ class RawImageDataset
   * any of the raw image files is not actually a RawImageFile => IndexError
   * series description, rmr number, or timestamp cannot be extracted from the first RawImageFile => IndexError
 =end
-  def initialize(directory, raw_image_files)
+  def initialize(directory, raw_image_files)
     @directory = File.expand_path(directory)
     raise(IOError, "#{@directory} not found.") if not File.directory?(@directory)
-    raise(IOError, "No raw image files supplied.") if (raw_image_files.nil? or raw_image_files.empty?)
+    raise(IOError, "No raw image files supplied.") unless raw_image_files
+    # If only a single raw_image_file was supplied, put it into an array for processing.
+    raw_image_files = [raw_image_files] if raw_image_files.class.to_s == "RawImageFile"
     raw_image_files.each do |im|
       raise(IndexError, im.to_s + " is not a RawImageFile") if im.class.to_s != "RawImageFile"
     end
@@ -94,7 +99,10 @@ at the visit level, or even higher when doing a whole file system scan.
      AND path = '#{@directory}'
      AND timestamp LIKE '#{@timestamp.to_s.split(/\+|Z/).first}%'"
   end
+=begin rdoc
+Returns a hash of attributes used for insertion into active record.
+=end
   def attributes_for_active_record
     { :rmr => @rmr_number,
       :series_description => @series_description,
@@ -106,8 +114,35 @@ at the visit level, or even higher when doing a whole file system scan.
       :slices_per_volume => @raw_image_files.first.num_slices,
       :scanned_file => @scanned_file }
   end
+=begin rdoc
+Implements an api for changing image datasets into usable nifti files.
+Pass in an output path and filename.
+The to3d code is applied as a mixed-in module.
+Returns the to3d command that creates the specified options.
+=end
+  def to_nifti(nifti_output_directory, nifti_filename, input_options = {} )
+    extend(UnknownImageDataset)
+    nifti_conversion_command, nifti_output_file = self.dataset_to_nifti(nifti_output_directory, nifti_filename, input_options)
+    return nifti_conversion_command, nifti_output_file
+  end
+=begin rdoc
+Uses to3d to create the nifti file as specified by to_nifti.
+Returns a path to the created dataset as a string if successful.
+=end
+  def to_nifti!(nifti_output_directory, nifti_filename, input_options = {} )
+    begin
+      nifti_conversion_command, nifti_output_file = to_nifti(nifti_output_directory, nifti_filename, input_options)
+      puts nifti_conversion_command
+      system "#{nifti_conversion_command}"
+      raise(IOError, "Could not convert image dataset: #{@directory} to #{nifti_output_file}") unless $? == 0
+    rescue IOError => e
+      raise "-- Warning: #{e.message}"
+    end
+    return nifti_conversion_command, nifti_output_file
+  end
 =begin rdoc
 Returns a globbing wildcard that is used by to3D to gather files for
@@ -135,8 +170,15 @@ have more component files than shell commands can handle.
     end
   end
-private
+=begin rdoc
+=end
+  def escape_filename(filename)
+    filename.gsub(/\s|:/,"-" )
+  end
+private
   # Gets the earliest timestamp among the raw image files in this dataset.
   def get_earliest_timestamp
     @timestamp = (@raw_image_files.sort_by { |i| i.timestamp }).first.timestamp

data/lib/raw_image_file.rb CHANGED Viewed

@@ -74,7 +74,7 @@ temporary file.
     raise(IOError, "File not found.") if not File.exists?(absfilepath)
     @filename = File.basename(absfilepath)
-    # try to read the header, raise an ioerror if unsuccessful
+    # try to read the header, raise an IOError if unsuccessful
     begin
       @hdr_data, @hdr_reader = read_header(absfilepath)
       #puts "@hdr_data: #{@hdr_data}; @hdr_reader: #{@hdr_reader}"

data/lib/visit_raw_data_directory.rb CHANGED Viewed

@@ -45,7 +45,13 @@ class VisitRawDataDirectory
   attr_reader :scan_procedure_name
   # scanner source
   attr_reader :scanner_source
+  #
   attr_accessor :db
+  # Scan ID is the short name for the scan (tbiva018, tbiva018b)
+  attr_accessor :scanid
+  PREPROCESS_REPOSITORY_DIRECTORY = '/Data/vtrak1/preprocessed/visits'
   # A new Visit instance needs to know the path to its raw data and scan_procedure name.  The scan_procedure
   # name must match a name in the database, if not a new scan_procedure entry will be inserted.
@@ -133,6 +139,38 @@ class VisitRawDataDirectory
     end
   end
+  def default_preprocess_directory
+    return File.join(PREPROCESS_REPOSITORY_DIRECTORY, scan_procedure_name, scanid)
+  end
+=begin rdoc
+Walks through the dicom datasets in this Scan Visit directory and performs naive file conversion to nifti format, which is useful for basic quality checking.
+Accepts an output directory as an optional argument, defaults to the system temp directory.
+Returns an array of the created nifti files.
+=end
+  def to_nifti!(output_directory = Dir.tmpdir)
+    flash "Converting raw data directory #{@visit_directory} to Niftis in #{output_directory}"
+    nifti_output_files = Array.new
+    scan if @datasets.empty?
+    @datasets.each do |dataset|
+      nifti_output_path = output_directory
+      nifti_filename = "#{scanid}_#{dataset.escape_filename(dataset.series_description)}_#{File.basename(dataset.directory)}.nii"
+      Pathname.new(dataset.directory).all_dicoms do |dicom_files|
+        nifti_conversion_command, nifti_output_file = dataset.to_nifti!(nifti_output_path, nifti_filename, :input_directory => @working_directory, :append_modality_directory => true)
+        nifti_output_files << nifti_output_file
+      end
+    end
+    return nifti_output_files
+  end
+  def scanid
+    @scanid ||= File.basename(visit_directory).split('_')[0]
+  end
   private
   def get_existing_dataset_id(ds)
@@ -220,7 +258,9 @@ class VisitRawDataDirectory
     "SELECT * FROM image_datasets WHERE rmr = '#{ds.rmr_number}' AND path = '#{ds.directory}' AND timestamp = '#{ds.timestamp}'"
   end
-  # generates an sql insert statement to insert this visit with a given participant id
+=begin rdoc
+generates an sql insert statement to insert this visit with a given participant id
+=end
   def sql_insert_visit(scan_procedure_id=0)
     "INSERT INTO visits
     (date, scan_procedure_id, scan_number, initials, rmr, radiology_outcome, notes, transfer_mri, transfer_pet,
@@ -242,6 +282,25 @@ class VisitRawDataDirectory
     return RawImageDataset.new(original_parent_directory.to_s, [rawimagefile])
   end
+  def convert_dataset(rawfiles, original_parent_directory, nifti_output_directory)
+    puts "Converting scan session: #{original_parent_directory.to_s} using raw data file: #{rawfiles.first.basename}"
+    rawimagefiles = []
+    rawfiles.each do |rawfile|
+      begin
+        rawimagefiles << RawImageFile.new(rawfile.to_s)
+      rescue Exception => e
+        raise(IOError, "Trouble reading raw image file #{rawfile}. #{e}")
+      end
+    end
+    dataset = RawImageDataset.new(original_parent_directory.to_s, rawimagefiles)
+    dataset.to_nifti()
+    #return RawImageDataset.new(original_parent_directory.to_s, rawimagefiles)
+  end
   def get_visit_timestamp
     (@datasets.sort_by { |ds| ds.timestamp }).first.timestamp
   end
@@ -325,6 +384,8 @@ class VisitRawDataDirectory
       return 'unknown.scan_procedure'
     end
   end
 end
@@ -381,6 +442,28 @@ class Pathname
     end
   end
+  def all_dicoms
+    local_copies = []
+    begin
+      entries.each do |leaf|
+        branch = self + leaf
+        if leaf.to_s =~ /^I\.|\.dcm(\.bz2)?$|\.0[0-9]+(\.bz2)?$/
+          local_copies << branch.local_copy
+        end
+      end
+      yield local_copies
+    ensure
+      local_copies.each { |lc| lc.delete }
+    end
+    return
+  end
   def local_copy
     tfbase = self.to_s =~ /\.bz2$/ ? self.basename.to_s.chomp(".bz2") : self.basename.to_s
     tmpfile = File.join(Dir.tmpdir, tfbase)

data/metamri.gemspec CHANGED Viewed

@@ -5,14 +5,14 @@
 Gem::Specification.new do |s|
   s.name = %q{metamri}
-  s.version = "0.1.0"
+  s.version = "0.1.4"
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Kristopher J. Kosmatka"]
-  s.date = %q{2009-12-08}
+  s.date = %q{2009-12-11}
   s.description = %q{Extraction of MRI metadata and insertion into compatible sqlite3 databases.}
   s.email = %q{kk4@medicine.wisc.edu}
-  s.executables = ["import_study.rb", "import_visit.rb"]
+  s.executables = ["import_study.rb", "import_visit.rb", "alz.visit1.scan.log", "wrap140.scan.log"]
   s.extra_rdoc_files = [
     "README.rdoc"
   ]
@@ -26,11 +26,13 @@ Gem::Specification.new do |s|
      "bin/import_visit.rb",
      "lib/metamri.rb",
      "lib/mysql_tools.rb",
+     "lib/nifti_builder.rb",
      "lib/raw_image_dataset.rb",
      "lib/raw_image_file.rb",
      "lib/series_description_parameters.rb",
      "lib/visit_raw_data_directory.rb",
      "metamri.gemspec",
+     "test/nifti_builder_spec.rb",
      "test/raw_image_dataset_test.rb",
      "test/raw_image_file_test.rb",
      "test/visit_duplication_test.rb",
@@ -45,7 +47,8 @@ Gem::Specification.new do |s|
     "test/raw_image_dataset_test.rb",
      "test/raw_image_file_test.rb",
      "test/visit_duplication_test.rb",
-     "test/visit_test.rb"
+     "test/visit_test.rb",
+     "test/nifti_builder_spec.rb"
   ]
   if s.respond_to? :specification_version then

data/test/nifti_builder_spec.rb ADDED Viewed

@@ -0,0 +1,85 @@
+$:.unshift File.join(File.dirname(__FILE__),'..','lib')
+require 'rubygems'
+require 'spec'
+require 'visit_raw_data_directory'
+require 'raw_image_dataset'
+require 'raw_image_file'
+describe "Convert Unknown Dicoms to Nifti Files" do
+  before(:each) do
+    @visit = VisitRawDataDirectory.new('/Data/vtrak1/raw/johnson.tbi-va.visit1/tbiva018b_9336_12022009', 'johnson.tbi-va.visit1')
+    @dataset = RawImageDataset.new('/Data/vtrak1/raw/johnson.tbi-va.visit1/tbiva018b_9336_12022009/001', [RawImageFile.new('/Data/vtrak1/raw/johnson.tbi-va.visit1/tbiva018b_9336_12022009/001/I0001.dcm')])
+    @test_niftis = Array.new
+    @output_directories = Array.new
+  end
+  it "should Convert an anatomical from dicom to nifti using original, unzipped files." do
+    @dataset.to_nifti('/tmp/', 'filename.nii', :input_directory => '/Data/vtrak1/raw/asthana.adrc-clinical-core.visit1/adrc00001_294_12022009/001')[0].should == "to3d -session /tmp/ -prefix filename.nii /Data/vtrak1/raw/asthana.adrc-clinical-core.visit1/adrc00001_294_12022009/001/'*.dcm'"
+    nifti_conversion_command, nifti_output_file = @dataset.to_nifti!('/tmp/', 'filename.nii', :input_directory => '/Data/vtrak1/raw/asthana.adrc-clinical-core.visit1/adrc00001_294_12022009/001')
+    nifti_conversion_command.should == "to3d -session /tmp/ -prefix filename.nii /Data/vtrak1/raw/asthana.adrc-clinical-core.visit1/adrc00001_294_12022009/001/'*.dcm'"
+    @test_niftis << nifti_output_file
+    @output_directories << '/tmp'
+  end
+  it "should convert all anatomicals in a visit raw directory using original, unzipped files." do
+    @visit.scan
+    @visit.datasets.each do |ds|
+      begin
+        nifti_filename = "#{@visit.scanid}_#{ds.escape_filename(ds.series_description)}_#{File.basename(ds.directory)}.nii"
+        nifti_conversion_commmand, nifti_output_file = ds.to_nifti!(File.join(Dir.tmpdir, @visit.default_preprocess_directory), nifti_filename, :input_directory => @dataset.directory, :append_modality_directory => true )
+        @test_niftis << nifti_output_file
+      rescue IOError => e
+        puts "-- Error: #{e.message}"
+      end
+    end
+    @output_directories = File.join(@visit.default_preprocess_directory, 'unknown')
+  end
+  it "should convert all anatomicals in a visit raw directory using local copy." do
+    @test_niftis << @visit.to_nifti!('/tmp')
+  end
+  it "should create a good to3d command with input directory or dicom files." do
+    nifti_output_path = '/tmp'
+    nifti_filename = '001.nii'
+    dataset_pathname = Pathname.new(@dataset.directory)
+    dataset_pathname.all_dicoms do |dicom_files|
+      nifti_conversion_command, nifti_output_file = @dataset.to_nifti(nifti_output_path, nifti_filename)
+      nifti_conversion_command.should == "to3d -session /tmp -prefix 001.nii #{Dir.tmpdir}/'*.dcm'"
+      nifti_conversion_command, nifti_output_file = @dataset.to_nifti(nifti_output_path, nifti_filename, :input_directory => '/tmp')
+      nifti_conversion_command.should == "to3d -session /tmp -prefix 001.nii /tmp/'*.dcm'"
+      nifti_conversion_command, nifti_output_file = @dataset.to_nifti(nifti_output_path, nifti_filename, :dicom_files => dicom_files)
+      nifti_conversion_command.should == "to3d -session /tmp -prefix 001.nii #{Dir.tmpdir}/I0001.dcm #{Dir.tmpdir}/I0002.dcm #{Dir.tmpdir}/I0003.dcm #{Dir.tmpdir}/I0004.dcm #{Dir.tmpdir}/I0005.dcm #{Dir.tmpdir}/I0006.dcm #{Dir.tmpdir}/I0007.dcm #{Dir.tmpdir}/I0008.dcm #{Dir.tmpdir}/I0009.dcm #{Dir.tmpdir}/I0010.dcm #{Dir.tmpdir}/I0011.dcm #{Dir.tmpdir}/I0012.dcm #{Dir.tmpdir}/I0013.dcm #{Dir.tmpdir}/I0014.dcm #{Dir.tmpdir}/I0015.dcm"
+    end
+  end
+  it "should append a modality if the :append_modality_directory is true." do
+    # For an unknown modality:
+    nifti_conversion_command, nifti_output_file = @dataset.to_nifti(Dir.tmpdir, 'filename.nii', :append_modality_directory => true)
+    nifti_conversion_command.should == "to3d -session #{Dir.tmpdir}/unknown -prefix filename.nii #{Dir.tmpdir}/'*.dcm'"
+  end
+  it "should guess scan id" do
+    @visit.scanid.should == 'tbiva018b'
+    v = VisitRawDataDirectory.new('/Data/vtrak1/preprocessed/visits/asthana.adrc-clinical-core.visit1/adrc00001', 'asthana.adrc-clinical-core.visit1')
+    v.scanid.should == 'adrc00001'
+  end
+  after do
+    @test_niftis.flatten.each { |nifti| File.delete(nifti) } unless @test_niftis.empty?
+    [@output_directories, Dir.tmpdir, '/tmp'].flatten.each do |temp_dir|
+      Dir.foreach(temp_dir) {|f| File.delete(File.join(temp_dir, f)) if File.extname(f) == '.nii'}
+    end
+  end
+end

metadata CHANGED Viewed

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: metamri
 version: !ruby/object:Gem::Version
-  version: 0.1.0
+  version: 0.1.4
 platform: ruby
 authors:
 - Kristopher J. Kosmatka
@@ -9,7 +9,7 @@ autorequire:
 bindir: bin
 cert_chain: []
-date: 2009-12-08 00:00:00 -06:00
+date: 2009-12-11 00:00:00 -06:00
 default_executable:
 dependencies: []
@@ -18,6 +18,8 @@ email: kk4@medicine.wisc.edu
 executables:
 - import_study.rb
 - import_visit.rb
+- alz.visit1.scan.log
+- wrap140.scan.log
 extensions: []
 extra_rdoc_files:
@@ -32,11 +34,13 @@ files:
 - bin/import_visit.rb
 - lib/metamri.rb
 - lib/mysql_tools.rb
+- lib/nifti_builder.rb
 - lib/raw_image_dataset.rb
 - lib/raw_image_file.rb
 - lib/series_description_parameters.rb
 - lib/visit_raw_data_directory.rb
 - metamri.gemspec
+- test/nifti_builder_spec.rb
 - test/raw_image_dataset_test.rb
 - test/raw_image_file_test.rb
 - test/visit_duplication_test.rb
@@ -74,3 +78,4 @@ test_files:
 - test/raw_image_file_test.rb
 - test/visit_duplication_test.rb
 - test/visit_test.rb
+- test/nifti_builder_spec.rb