metamri 0.1.0 → 0.1.4

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Files changed (11) hide show
  1. data/.gitignore +3 -0
  2. data/VERSION +1 -1
  3. data/bin/alz.visit1.scan.log +605 -0
  4. data/bin/wrap140.scan.log +111 -0
  5. data/lib/nifti_builder.rb +28 -0
  6. data/lib/raw_image_dataset.rb +49 -7
  7. data/lib/raw_image_file.rb +1 -1
  8. data/lib/visit_raw_data_directory.rb +84 -1
  9. data/metamri.gemspec +7 -4
  10. data/test/nifti_builder_spec.rb +85 -0
  11. metadata +7 -2
data/.gitignore CHANGED
@@ -1,3 +1,6 @@
1
1
  *.log
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2
  *.gem
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3
  ._*
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+ .idea
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+ *~
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+
data/VERSION CHANGED
@@ -1 +1 @@
1
- 0.1.0
1
+ 0.1.4
data/bin/alz.visit1.scan.log ADDED
@@ -0,0 +1,605 @@
1
+ # Logfile created on Wed Oct 28 11:42:37 -0500 2009 by logger.rb/22285
2
+ E, [2009-10-28T11:46:28.625449 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz065... skipping.
3
+ E, [2009-10-28T11:46:28.640191 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz065/raw:
4
+ E, [2009-10-28T11:46:29.749197 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz001... skipping.
5
+ E, [2009-10-28T11:46:29.758521 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz001/raw:
6
+ E, [2009-10-28T11:46:29.831370 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz003... skipping.
7
+ E, [2009-10-28T11:46:29.834961 #1039] ERROR -- : Exception message:
8
+ E, [2009-10-28T11:46:29.915357 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz004... skipping.
9
+ E, [2009-10-28T11:46:29.919177 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz004/anatomicals/S1:
10
+ E, [2009-10-28T11:46:29.998764 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz005... skipping.
11
+ E, [2009-10-28T11:46:30.002652 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz005/anatomicals/S1:
12
+ E, [2009-10-28T11:46:30.082063 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz006... skipping.
13
+ E, [2009-10-28T11:46:30.085848 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz006/anatomicals/S1:
14
+ E, [2009-10-28T11:46:30.473206 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz007... skipping.
15
+ E, [2009-10-28T11:46:30.477111 #1039] ERROR -- : Exception message:
16
+ E, [2009-10-28T11:46:30.973478 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz008... skipping.
17
+ E, [2009-10-28T11:46:30.977347 #1039] ERROR -- : Exception message:
18
+ E, [2009-10-28T11:46:31.057161 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz009... skipping.
19
+ E, [2009-10-28T11:46:31.061044 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz009/anatomicals/S1:
20
+ E, [2009-10-28T11:46:31.223208 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz010... skipping.
21
+ E, [2009-10-28T11:46:31.227192 #1039] ERROR -- : Exception message:
22
+ E, [2009-10-28T11:46:31.391657 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz011... skipping.
23
+ E, [2009-10-28T11:46:31.395835 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz011/anatomicals/S3:
24
+ E, [2009-10-28T11:46:31.473904 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz012... skipping.
25
+ E, [2009-10-28T11:46:31.478039 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz012/anatomicals/S1:
26
+ E, [2009-10-28T11:46:31.640691 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz013... skipping.
27
+ E, [2009-10-28T11:46:31.644934 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz013/anatomicals/S3:
28
+ E, [2009-10-28T11:46:31.723959 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz014... skipping.
29
+ E, [2009-10-28T11:46:31.728127 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz014/anatomicals/S1:
30
+ E, [2009-10-28T11:46:31.890430 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz015... skipping.
31
+ E, [2009-10-28T11:46:31.894579 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz015/anatomicals/S3:
32
+ E, [2009-10-28T11:46:31.973448 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz016... skipping.
33
+ E, [2009-10-28T11:46:31.977526 #1039] ERROR -- : Exception message:
34
+ E, [2009-10-28T11:46:32.141056 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz017... skipping.
35
+ E, [2009-10-28T11:46:32.145171 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz017/anatomicals/S3:
36
+ E, [2009-10-28T11:46:32.223427 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz018... skipping.
37
+ E, [2009-10-28T11:46:32.227364 #1039] ERROR -- : Exception message:
38
+ E, [2009-10-28T11:46:32.391166 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz019... skipping.
39
+ E, [2009-10-28T11:46:32.395519 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz019/anatomicals/S3:
40
+ E, [2009-10-28T11:46:32.504398 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz020... skipping.
41
+ E, [2009-10-28T11:46:32.508445 #1039] ERROR -- : Exception message:
42
+ E, [2009-10-28T11:46:32.559138 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz021... skipping.
43
+ E, [2009-10-28T11:46:32.563419 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz021/anatomicals/S1:
44
+ E, [2009-10-28T11:46:32.723727 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz023... skipping.
45
+ E, [2009-10-28T11:46:32.728053 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz023/anatomicals/S3:
46
+ E, [2009-10-28T11:46:32.806979 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz025... skipping.
47
+ E, [2009-10-28T11:46:32.811255 #1039] ERROR -- : Exception message:
48
+ E, [2009-10-28T11:46:32.890277 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz026... skipping.
49
+ E, [2009-10-28T11:46:32.894698 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz026/anatomicals/FAST3:
50
+ E, [2009-10-28T11:46:32.973699 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz027... skipping.
51
+ E, [2009-10-28T11:46:32.977939 #1039] ERROR -- : Exception message:
52
+ E, [2009-10-28T11:46:33.057059 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz028... skipping.
53
+ E, [2009-10-28T11:46:33.061383 #1039] ERROR -- : Exception message:
54
+ E, [2009-10-28T11:46:33.141338 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz029... skipping.
55
+ E, [2009-10-28T11:46:33.145830 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz029/anatomicals/S1:
56
+ E, [2009-10-28T11:46:33.223781 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz030... skipping.
57
+ E, [2009-10-28T11:46:33.227790 #1039] ERROR -- : Exception message:
58
+ E, [2009-10-28T11:46:33.307167 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz031... skipping.
59
+ E, [2009-10-28T11:46:33.311243 #1039] ERROR -- : Exception message:
60
+ E, [2009-10-28T11:46:33.390503 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz032... skipping.
61
+ E, [2009-10-28T11:46:33.394944 #1039] ERROR -- : Exception message:
62
+ E, [2009-10-28T11:46:33.473870 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz033... skipping.
63
+ E, [2009-10-28T11:46:33.478141 #1039] ERROR -- : Exception message:
64
+ E, [2009-10-28T11:46:33.557247 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz034... skipping.
65
+ E, [2009-10-28T11:46:33.561583 #1039] ERROR -- : Exception message:
66
+ E, [2009-10-28T11:46:33.724802 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz035... skipping.
67
+ E, [2009-10-28T11:46:33.729219 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz035/anatomicals/S3:
68
+ E, [2009-10-28T11:46:33.891435 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz036... skipping.
69
+ E, [2009-10-28T11:46:33.895877 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz036/anatomicals/S3:
70
+ E, [2009-10-28T11:46:34.058533 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz037... skipping.
71
+ E, [2009-10-28T11:46:34.063307 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz037/anatomicals/S3:
72
+ E, [2009-10-28T11:46:34.141910 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz039_A... skipping.
73
+ E, [2009-10-28T11:46:34.146514 #1039] ERROR -- : Exception message:
74
+ E, [2009-10-28T11:46:34.225080 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz039_B... skipping.
75
+ E, [2009-10-28T11:46:34.229947 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz039_B/anatomicals/S1:
76
+ E, [2009-10-28T11:46:34.308547 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz040... skipping.
77
+ E, [2009-10-28T11:46:34.313412 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz040/anatomicals/S1:
78
+ E, [2009-10-28T11:46:34.475189 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz041... skipping.
79
+ E, [2009-10-28T11:46:34.480049 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz041/anatomicals/S3:
80
+ E, [2009-10-28T11:46:34.558646 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz042... skipping.
81
+ E, [2009-10-28T11:46:34.563747 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz042/anatomicals/S1:
82
+ E, [2009-10-28T11:46:34.641845 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz043... skipping.
83
+ E, [2009-10-28T11:46:34.649953 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz043/anatomicals/S1:
84
+ E, [2009-10-28T11:46:34.808573 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz044... skipping.
85
+ E, [2009-10-28T11:46:34.813357 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz044/anatomicals/S3:
86
+ E, [2009-10-28T11:46:34.891904 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz045... skipping.
87
+ E, [2009-10-28T11:46:34.896800 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz045/anatomicals/S1:
88
+ E, [2009-10-28T11:46:34.974428 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz046... skipping.
89
+ E, [2009-10-28T11:46:34.979033 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz046/anatomicals/S1:
90
+ E, [2009-10-28T11:46:35.059375 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz047... skipping.
91
+ E, [2009-10-28T11:46:35.063996 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz047/anatomicals/S1:
92
+ E, [2009-10-28T11:46:35.142261 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz048... skipping.
93
+ E, [2009-10-28T11:46:35.147207 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz048/anatomicals/S1:
94
+ E, [2009-10-28T11:46:35.308698 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz049... skipping.
95
+ E, [2009-10-28T11:46:35.313837 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz049/anatomicals/S3:
96
+ E, [2009-10-28T11:46:35.475595 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz050... skipping.
97
+ E, [2009-10-28T11:46:35.480964 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz050/anatomicals/S3:
98
+ E, [2009-10-28T11:46:36.061350 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz051... skipping.
99
+ E, [2009-10-28T11:46:36.066404 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz051/anatomicals/S5:
100
+ E, [2009-10-28T11:46:36.561263 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz052... skipping.
101
+ E, [2009-10-28T11:46:36.592584 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz052/raw:
102
+ E, [2009-10-28T11:46:36.645115 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz053... skipping.
103
+ E, [2009-10-28T11:46:36.660023 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz053/anatomicals/S1:
104
+ E, [2009-10-28T11:46:36.810991 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz054... skipping.
105
+ E, [2009-10-28T11:46:36.815944 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz054/anatomicals/S3:
106
+ E, [2009-10-28T11:46:36.977802 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz055... skipping.
107
+ E, [2009-10-28T11:46:36.982373 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz055/anatomicals/S3:
108
+ E, [2009-10-28T11:46:37.061427 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz056_A... skipping.
109
+ E, [2009-10-28T11:46:37.066316 #1039] ERROR -- : Exception message:
110
+ E, [2009-10-28T11:46:37.228147 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz056_B... skipping.
111
+ E, [2009-10-28T11:46:37.233209 #1039] ERROR -- : Exception message:
112
+ E, [2009-10-28T11:46:37.394763 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz057... skipping.
113
+ E, [2009-10-28T11:46:37.400135 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz057/anatomicals/S3:
114
+ E, [2009-10-28T11:46:37.478038 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz058... skipping.
115
+ E, [2009-10-28T11:46:37.483800 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz058/anatomicals/S1:
116
+ E, [2009-10-28T11:46:37.646026 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz059... skipping.
117
+ E, [2009-10-28T11:46:37.651473 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz059/anatomicals/S3:
118
+ E, [2009-10-28T11:46:37.811701 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz060... skipping.
119
+ E, [2009-10-28T11:46:37.817371 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz060/anatomicals/S3:
120
+ E, [2009-10-28T11:46:37.895252 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz061_A... skipping.
121
+ E, [2009-10-28T11:46:37.901041 #1039] ERROR -- : Exception message:
122
+ E, [2009-10-28T11:46:38.098374 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz066... skipping.
123
+ E, [2009-10-28T11:46:38.103975 #1039] ERROR -- : Exception message:
124
+ E, [2009-10-28T11:46:38.144143 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz067... skipping.
125
+ E, [2009-10-28T11:46:38.149449 #1039] ERROR -- : Exception message:
126
+ E, [2009-10-28T11:46:38.228870 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz068... skipping.
127
+ E, [2009-10-28T11:46:38.237404 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz068/anatomicals/S1:
128
+ E, [2009-10-28T11:46:38.312138 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz071... skipping.
129
+ E, [2009-10-28T11:46:38.317610 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz071/anatomicals/S1:
130
+ E, [2009-10-28T11:46:38.395679 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz072... skipping.
131
+ E, [2009-10-28T11:46:38.400816 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz072/anatomicals/S1:
132
+ E, [2009-10-28T11:46:38.479335 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz073... skipping.
133
+ E, [2009-10-28T11:46:38.483485 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz073/anatomicals/S1:
134
+ E, [2009-10-28T11:46:38.562212 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz074... skipping.
135
+ E, [2009-10-28T11:46:38.567924 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz074/anatomicals/S1:
136
+ E, [2009-10-28T11:46:38.645380 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz075... skipping.
137
+ E, [2009-10-28T11:46:38.650883 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz075/anatomicals/S1:
138
+ E, [2009-10-28T11:46:38.811147 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz076... skipping.
139
+ E, [2009-10-28T11:46:38.816776 #1039] ERROR -- : Exception message:
140
+ E, [2009-10-28T11:46:38.977911 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz077... skipping.
141
+ E, [2009-10-28T11:46:38.983472 #1039] ERROR -- : Exception message:
142
+ E, [2009-10-28T11:46:39.144572 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz078... skipping.
143
+ E, [2009-10-28T11:46:39.150381 #1039] ERROR -- : Exception message:
144
+ E, [2009-10-28T11:46:39.228476 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz079... skipping.
145
+ E, [2009-10-28T11:46:39.241061 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz079/anatomicals/S1:
146
+ E, [2009-10-28T11:46:39.311143 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz080... skipping.
147
+ E, [2009-10-28T11:46:39.316768 #1039] ERROR -- : Exception message:
148
+ E, [2009-10-28T11:46:39.478012 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz081... skipping.
149
+ E, [2009-10-28T11:46:39.483666 #1039] ERROR -- : Exception message:
150
+ E, [2009-10-28T11:46:39.644764 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz082... skipping.
151
+ E, [2009-10-28T11:46:39.650319 #1039] ERROR -- : Exception message:
152
+ E, [2009-10-28T11:46:39.811445 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz084... skipping.
153
+ E, [2009-10-28T11:46:39.816705 #1039] ERROR -- : Exception message:
154
+ E, [2009-10-28T11:46:39.978190 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz085... skipping.
155
+ E, [2009-10-28T11:46:39.983889 #1039] ERROR -- : Exception message:
156
+ E, [2009-10-28T11:46:40.144989 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz086... skipping.
157
+ E, [2009-10-28T11:46:40.151029 #1039] ERROR -- : Exception message:
158
+ E, [2009-10-28T11:46:40.229125 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz087... skipping.
159
+ E, [2009-10-28T11:46:40.238224 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz087/anatomicals/S1:
160
+ E, [2009-10-28T11:46:40.395063 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz088... skipping.
161
+ E, [2009-10-28T11:46:40.400628 #1039] ERROR -- : Exception message:
162
+ E, [2009-10-28T11:46:40.561772 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz089... skipping.
163
+ E, [2009-10-28T11:46:40.567270 #1039] ERROR -- : Exception message:
164
+ E, [2009-10-28T11:46:40.728503 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz091... skipping.
165
+ E, [2009-10-28T11:46:40.734164 #1039] ERROR -- : Exception message:
166
+ E, [2009-10-28T11:46:40.895173 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz092... skipping.
167
+ E, [2009-10-28T11:46:40.900811 #1039] ERROR -- : Exception message:
168
+ E, [2009-10-28T11:46:41.061970 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz093... skipping.
169
+ E, [2009-10-28T11:46:41.067758 #1039] ERROR -- : Exception message:
170
+ E, [2009-10-28T11:46:41.228696 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz094... skipping.
171
+ E, [2009-10-28T11:46:41.234399 #1039] ERROR -- : Exception message:
172
+ E, [2009-10-28T11:46:41.395350 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz096... skipping.
173
+ E, [2009-10-28T11:46:41.401040 #1039] ERROR -- : Exception message:
174
+ E, [2009-10-28T11:46:41.562084 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz097... skipping.
175
+ E, [2009-10-28T11:46:41.567691 #1039] ERROR -- : Exception message:
176
+ E, [2009-10-28T11:46:41.728803 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz098... skipping.
177
+ E, [2009-10-28T11:46:41.734598 #1039] ERROR -- : Exception message:
178
+ E, [2009-10-28T11:46:41.895452 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz099... skipping.
179
+ E, [2009-10-28T11:46:41.901232 #1039] ERROR -- : Exception message:
180
+ E, [2009-10-28T11:46:41.980330 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz100... skipping.
181
+ E, [2009-10-28T11:46:41.985969 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz100/anatomicals/S1:
182
+ E, [2009-10-28T11:46:42.063404 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz101_A... skipping.
183
+ E, [2009-10-28T11:46:42.068929 #1039] ERROR -- : Exception message:
184
+ E, [2009-10-28T11:46:42.230138 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz101_B... skipping.
185
+ E, [2009-10-28T11:46:42.235831 #1039] ERROR -- : Exception message:
186
+ E, [2009-10-28T11:46:42.395916 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz102... skipping.
187
+ E, [2009-10-28T11:46:42.401980 #1039] ERROR -- : Exception message:
188
+ E, [2009-10-28T11:46:42.562672 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz103... skipping.
189
+ E, [2009-10-28T11:46:42.568606 #1039] ERROR -- : Exception message:
190
+ E, [2009-10-28T11:46:42.729241 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz105... skipping.
191
+ E, [2009-10-28T11:46:42.735255 #1039] ERROR -- : Exception message:
192
+ E, [2009-10-28T11:46:42.813472 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz106... skipping.
193
+ E, [2009-10-28T11:46:42.819458 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz106/anatomicals/S1:
194
+ E, [2009-10-28T11:46:42.979355 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz107... skipping.
195
+ E, [2009-10-28T11:46:42.985140 #1039] ERROR -- : Exception message:
196
+ E, [2009-10-28T11:46:43.063185 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz108... skipping.
197
+ E, [2009-10-28T11:46:43.072087 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz108/anatomicals/S1:
198
+ E, [2009-10-28T11:46:43.146002 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz109... skipping.
199
+ E, [2009-10-28T11:46:43.152052 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz109/anatomicals/S1:
200
+ E, [2009-10-28T11:46:43.312648 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz110... skipping.
201
+ E, [2009-10-28T11:46:43.318191 #1039] ERROR -- : Exception message:
202
+ E, [2009-10-28T11:46:43.479421 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz111... skipping.
203
+ E, [2009-10-28T11:46:43.485340 #1039] ERROR -- : Exception message:
204
+ E, [2009-10-28T11:46:43.646115 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz112... skipping.
205
+ E, [2009-10-28T11:46:43.651974 #1039] ERROR -- : Exception message:
206
+ E, [2009-10-28T11:46:43.729867 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz113... skipping.
207
+ E, [2009-10-28T11:46:43.735691 #1039] ERROR -- : Exception message:
208
+ E, [2009-10-28T11:46:43.813776 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz114... skipping.
209
+ E, [2009-10-28T11:46:43.819630 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz114/anatomicals/S1:
210
+ E, [2009-10-28T11:46:43.979563 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz115... skipping.
211
+ E, [2009-10-28T11:46:43.985066 #1039] ERROR -- : Exception message:
212
+ E, [2009-10-28T11:46:44.063879 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz116... skipping.
213
+ E, [2009-10-28T11:46:44.072010 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz116/anatomicals/S1:
214
+ E, [2009-10-28T11:46:44.147006 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz117... skipping.
215
+ E, [2009-10-28T11:46:44.154949 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz117/anatomicals/S1:
216
+ E, [2009-10-28T11:46:44.230631 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz118... skipping.
217
+ E, [2009-10-28T11:46:44.262635 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz118/anatomicals/S1:
218
+ E, [2009-10-28T11:46:44.313116 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz119... skipping.
219
+ E, [2009-10-28T11:46:44.319142 #1039] ERROR -- : Exception message:
220
+ E, [2009-10-28T11:46:44.479660 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz120... skipping.
221
+ E, [2009-10-28T11:46:44.485252 #1039] ERROR -- : Exception message:
222
+ E, [2009-10-28T11:46:44.646393 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz121... skipping.
223
+ E, [2009-10-28T11:46:44.652398 #1039] ERROR -- : Exception message:
224
+ E, [2009-10-28T11:46:44.813069 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz122... skipping.
225
+ E, [2009-10-28T11:46:44.818796 #1039] ERROR -- : Exception message:
226
+ E, [2009-10-28T11:46:44.979808 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz123... skipping.
227
+ E, [2009-10-28T11:46:44.985734 #1039] ERROR -- : Exception message:
228
+ E, [2009-10-28T11:46:45.146698 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz124... skipping.
229
+ E, [2009-10-28T11:46:45.152903 #1039] ERROR -- : Exception message:
230
+ E, [2009-10-28T11:46:45.313366 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz125... skipping.
231
+ E, [2009-10-28T11:46:45.319796 #1039] ERROR -- : Exception message:
232
+ E, [2009-10-28T11:46:45.480034 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz126... skipping.
233
+ E, [2009-10-28T11:46:45.486171 #1039] ERROR -- : Exception message:
234
+ E, [2009-10-28T11:46:45.647545 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz127... skipping.
235
+ E, [2009-10-28T11:46:45.653072 #1039] ERROR -- : Exception message:
236
+ E, [2009-10-28T11:46:45.813513 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz128... skipping.
237
+ E, [2009-10-28T11:46:45.819975 #1039] ERROR -- : Exception message:
238
+ E, [2009-10-28T11:46:45.980171 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz129... skipping.
239
+ E, [2009-10-28T11:46:45.986671 #1039] ERROR -- : Exception message:
240
+ E, [2009-10-28T11:46:46.147025 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz130... skipping.
241
+ E, [2009-10-28T11:46:46.153554 #1039] ERROR -- : Exception message:
242
+ E, [2009-10-28T11:46:46.313771 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz131... skipping.
243
+ E, [2009-10-28T11:46:46.320198 #1039] ERROR -- : Exception message:
244
+ E, [2009-10-28T11:46:46.480526 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz132... skipping.
245
+ E, [2009-10-28T11:46:46.487112 #1039] ERROR -- : Exception message:
246
+ E, [2009-10-28T11:46:46.564471 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz133... skipping.
247
+ E, [2009-10-28T11:46:46.574293 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz133/anatomicals/S1:
248
+ E, [2009-10-28T11:46:46.730446 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz134... skipping.
249
+ E, [2009-10-28T11:46:46.736679 #1039] ERROR -- : Exception message:
250
+ E, [2009-10-28T11:46:46.897305 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz135... skipping.
251
+ E, [2009-10-28T11:46:46.903851 #1039] ERROR -- : Exception message:
252
+ E, [2009-10-28T11:46:46.980367 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz136... skipping.
253
+ E, [2009-10-28T11:46:46.986591 #1039] ERROR -- : Exception message:
254
+ E, [2009-10-28T11:46:47.185558 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz137... skipping.
255
+ E, [2009-10-28T11:46:47.191969 #1039] ERROR -- : Exception message:
256
+ E, [2009-10-28T11:46:47.232126 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz138... skipping.
257
+ E, [2009-10-28T11:46:47.238688 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz138/anatomicals/S1:
258
+ E, [2009-10-28T11:46:47.262874 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz139... skipping.
259
+ E, [2009-10-28T11:46:47.268908 #1039] ERROR -- : Exception message: No datasets could be scanned for directory /Data/vtrak1/raw/alz_2000/alz139
260
+ E, [2009-10-28T11:46:47.318904 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz140... skipping.
261
+ E, [2009-10-28T11:46:47.329430 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz140/anatomicals/S1:
262
+ E, [2009-10-28T11:46:47.480641 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz141... skipping.
263
+ E, [2009-10-28T11:46:47.487264 #1039] ERROR -- : Exception message:
264
+ E, [2009-10-28T11:46:47.565944 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz142... skipping.
265
+ E, [2009-10-28T11:46:47.589713 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz142/anatomicals/S1:
266
+ E, [2009-10-28T11:46:47.649200 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz143... skipping.
267
+ E, [2009-10-28T11:46:47.655955 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz143/anatomicals/S1:
268
+ E, [2009-10-28T11:46:47.732493 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz144... skipping.
269
+ E, [2009-10-28T11:46:47.740666 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz144/anatomicals/S1:
270
+ E, [2009-10-28T11:46:47.897569 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz145... skipping.
271
+ E, [2009-10-28T11:46:47.901248 #1039] ERROR -- : Exception message:
272
+ E, [2009-10-28T11:46:48.065058 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz146... skipping.
273
+ E, [2009-10-28T11:46:48.068695 #1039] ERROR -- : Exception message:
274
+ E, [2009-10-28T11:46:48.231689 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz147... skipping.
275
+ E, [2009-10-28T11:46:48.235326 #1039] ERROR -- : Exception message:
276
+ E, [2009-10-28T11:46:48.397635 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz148... skipping.
277
+ E, [2009-10-28T11:46:48.401488 #1039] ERROR -- : Exception message:
278
+ E, [2009-10-28T11:46:48.565226 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz149... skipping.
279
+ E, [2009-10-28T11:46:48.569128 #1039] ERROR -- : Exception message:
280
+ E, [2009-10-28T11:46:48.731113 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz150... skipping.
281
+ E, [2009-10-28T11:46:48.735029 #1039] ERROR -- : Exception message:
282
+ E, [2009-10-28T11:46:48.898624 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz151... skipping.
283
+ E, [2009-10-28T11:46:48.902411 #1039] ERROR -- : Exception message:
284
+ E, [2009-10-28T11:46:49.065570 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz152... skipping.
285
+ E, [2009-10-28T11:46:49.069606 #1039] ERROR -- : Exception message:
286
+ E, [2009-10-28T11:46:49.232174 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz153... skipping.
287
+ E, [2009-10-28T11:46:49.236247 #1039] ERROR -- : Exception message:
288
+ E, [2009-10-28T11:46:49.398730 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz154... skipping.
289
+ E, [2009-10-28T11:46:49.402656 #1039] ERROR -- : Exception message:
290
+ E, [2009-10-28T11:46:49.565550 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz158... skipping.
291
+ E, [2009-10-28T11:46:49.569537 #1039] ERROR -- : Exception message:
292
+ E, [2009-10-28T11:46:49.732577 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz159... skipping.
293
+ E, [2009-10-28T11:46:49.736687 #1039] ERROR -- : Exception message:
294
+ E, [2009-10-28T11:46:49.898888 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz160... skipping.
295
+ E, [2009-10-28T11:46:49.903071 #1039] ERROR -- : Exception message:
296
+ E, [2009-10-28T11:46:50.066529 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz162... skipping.
297
+ E, [2009-10-28T11:46:50.070779 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz162/anatomicals/S2:
298
+ E, [2009-10-28T11:46:50.232554 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz163... skipping.
299
+ E, [2009-10-28T11:46:50.236672 #1039] ERROR -- : Exception message:
300
+ E, [2009-10-28T11:46:50.399271 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz164... skipping.
301
+ E, [2009-10-28T11:46:50.403316 #1039] ERROR -- : Exception message:
302
+ E, [2009-10-28T11:46:50.565989 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz165... skipping.
303
+ E, [2009-10-28T11:46:50.570207 #1039] ERROR -- : Exception message:
304
+ E, [2009-10-28T11:46:50.648667 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz167... skipping.
305
+ E, [2009-10-28T11:46:50.652960 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz167/anatomicals/S1:
306
+ E, [2009-10-28T11:46:50.815266 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz168... skipping.
307
+ E, [2009-10-28T11:46:50.819550 #1039] ERROR -- : Exception message:
308
+ E, [2009-10-28T11:46:50.910318 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz169... skipping.
309
+ E, [2009-10-28T11:46:50.914503 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz169/anatomicals/S1:
310
+ E, [2009-10-28T11:46:51.065311 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz170... skipping.
311
+ E, [2009-10-28T11:46:51.069444 #1039] ERROR -- : Exception message:
312
+ E, [2009-10-28T11:46:51.231977 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz171... skipping.
313
+ E, [2009-10-28T11:46:51.236094 #1039] ERROR -- : Exception message:
314
+ E, [2009-10-28T11:46:51.316441 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz172... skipping.
315
+ E, [2009-10-28T11:46:51.320546 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz172/anatomicals/S1:
316
+ E, [2009-10-28T11:46:51.481993 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz173... skipping.
317
+ E, [2009-10-28T11:46:51.486196 #1039] ERROR -- : Exception message:
318
+ E, [2009-10-28T11:46:51.649604 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz174... skipping.
319
+ E, [2009-10-28T11:46:51.653582 #1039] ERROR -- : Exception message:
320
+ E, [2009-10-28T11:46:51.816106 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz175... skipping.
321
+ E, [2009-10-28T11:46:51.820488 #1039] ERROR -- : Exception message:
322
+ E, [2009-10-28T11:46:51.982919 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz176... skipping.
323
+ E, [2009-10-28T11:46:51.987162 #1039] ERROR -- : Exception message:
324
+ E, [2009-10-28T11:46:52.149644 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz177... skipping.
325
+ E, [2009-10-28T11:46:52.154065 #1039] ERROR -- : Exception message:
326
+ E, [2009-10-28T11:46:52.399964 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz178... skipping.
327
+ E, [2009-10-28T11:46:52.404406 #1039] ERROR -- : Exception message:
328
+ E, [2009-10-28T11:46:52.566556 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz179... skipping.
329
+ E, [2009-10-28T11:46:52.570794 #1039] ERROR -- : Exception message:
330
+ E, [2009-10-28T11:46:52.732519 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz180... skipping.
331
+ E, [2009-10-28T11:46:52.736939 #1039] ERROR -- : Exception message:
332
+ E, [2009-10-28T11:46:52.816758 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz181... skipping.
333
+ E, [2009-10-28T11:46:52.821155 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz181/anatomicals/S1:
334
+ E, [2009-10-28T11:46:52.900044 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz182... skipping.
335
+ E, [2009-10-28T11:46:52.904347 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz182/anatomicals/S1:
336
+ E, [2009-10-28T11:46:52.983484 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz183... skipping.
337
+ E, [2009-10-28T11:46:52.987844 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz183/anatomicals/S1:
338
+ E, [2009-10-28T11:46:53.149265 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz184... skipping.
339
+ E, [2009-10-28T11:46:53.153733 #1039] ERROR -- : Exception message:
340
+ E, [2009-10-28T11:46:53.315967 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz185... skipping.
341
+ E, [2009-10-28T11:46:53.320386 #1039] ERROR -- : Exception message:
342
+ E, [2009-10-28T11:46:53.483586 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz186... skipping.
343
+ E, [2009-10-28T11:46:53.488279 #1039] ERROR -- : Exception message:
344
+ E, [2009-10-28T11:46:53.566719 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz187... skipping.
345
+ E, [2009-10-28T11:46:53.573735 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz187/anatomicals/S1:
346
+ E, [2009-10-28T11:46:53.650176 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz188... skipping.
347
+ E, [2009-10-28T11:46:53.655169 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz188/anatomicals/S1:
348
+ E, [2009-10-28T11:46:53.733533 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz189... skipping.
349
+ E, [2009-10-28T11:46:53.738131 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz189/anatomicals/S1:
350
+ E, [2009-10-28T11:46:53.899339 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz190... skipping.
351
+ E, [2009-10-28T11:46:53.904025 #1039] ERROR -- : Exception message:
352
+ E, [2009-10-28T11:46:54.066120 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz191... skipping.
353
+ E, [2009-10-28T11:46:54.070715 #1039] ERROR -- : Exception message:
354
+ E, [2009-10-28T11:46:54.150480 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz192... skipping.
355
+ E, [2009-10-28T11:46:54.155147 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz192/anatomicals/S1:
356
+ E, [2009-10-28T11:46:54.317377 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz193... skipping.
357
+ E, [2009-10-28T11:46:54.322062 #1039] ERROR -- : Exception message:
358
+ E, [2009-10-28T11:46:54.483124 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz194... skipping.
359
+ E, [2009-10-28T11:46:54.487972 #1039] ERROR -- : Exception message:
360
+ E, [2009-10-28T11:46:54.649917 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz195... skipping.
361
+ E, [2009-10-28T11:46:54.654599 #1039] ERROR -- : Exception message:
362
+ E, [2009-10-28T11:46:54.816648 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz196... skipping.
363
+ E, [2009-10-28T11:46:54.821759 #1039] ERROR -- : Exception message:
364
+ E, [2009-10-28T11:46:54.984106 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz197... skipping.
365
+ E, [2009-10-28T11:46:54.988932 #1039] ERROR -- : Exception message:
366
+ E, [2009-10-28T11:46:55.173613 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz198... skipping.
367
+ E, [2009-10-28T11:46:55.178313 #1039] ERROR -- : Exception message:
368
+ E, [2009-10-28T11:46:55.235526 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz199... skipping.
369
+ E, [2009-10-28T11:46:55.240037 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz199/anatomicals/S1:
370
+ E, [2009-10-28T11:46:55.318593 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz200... skipping.
371
+ E, [2009-10-28T11:46:55.323475 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz200/anatomicals/S1:
372
+ E, [2009-10-28T11:46:55.483265 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz201... skipping.
373
+ E, [2009-10-28T11:46:55.488119 #1039] ERROR -- : Exception message:
374
+ E, [2009-10-28T11:46:55.649969 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz202... skipping.
375
+ E, [2009-10-28T11:46:55.654755 #1039] ERROR -- : Exception message:
376
+ E, [2009-10-28T11:46:55.816663 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz203... skipping.
377
+ E, [2009-10-28T11:46:55.821428 #1039] ERROR -- : Exception message:
378
+ E, [2009-10-28T11:46:55.900795 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz204... skipping.
379
+ E, [2009-10-28T11:46:55.906111 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz204/anatomicals/S1:
380
+ E, [2009-10-28T11:46:56.066786 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz205... skipping.
381
+ E, [2009-10-28T11:46:56.071555 #1039] ERROR -- : Exception message:
382
+ E, [2009-10-28T11:46:56.234368 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz206... skipping.
383
+ E, [2009-10-28T11:46:56.239195 #1039] ERROR -- : Exception message:
384
+ E, [2009-10-28T11:46:56.400198 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz207... skipping.
385
+ E, [2009-10-28T11:46:56.405103 #1039] ERROR -- : Exception message:
386
+ E, [2009-10-28T11:46:56.567089 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz208... skipping.
387
+ E, [2009-10-28T11:46:56.572001 #1039] ERROR -- : Exception message:
388
+ E, [2009-10-28T11:46:56.733797 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz209... skipping.
389
+ E, [2009-10-28T11:46:56.738644 #1039] ERROR -- : Exception message:
390
+ E, [2009-10-28T11:46:56.900487 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz210... skipping.
391
+ E, [2009-10-28T11:46:56.905299 #1039] ERROR -- : Exception message:
392
+ E, [2009-10-28T11:46:57.068139 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz211... skipping.
393
+ E, [2009-10-28T11:46:57.072978 #1039] ERROR -- : Exception message:
394
+ E, [2009-10-28T11:46:57.151734 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz212... skipping.
395
+ E, [2009-10-28T11:46:57.156658 #1039] ERROR -- : Exception message:
396
+ E, [2009-10-28T11:46:57.318098 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz213... skipping.
397
+ E, [2009-10-28T11:46:57.323306 #1039] ERROR -- : Exception message:
398
+ E, [2009-10-28T11:46:57.401246 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz214... skipping.
399
+ E, [2009-10-28T11:46:57.410757 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz214/anatomicals/S1_3-Plane:
400
+ E, [2009-10-28T11:46:57.484684 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz215... skipping.
401
+ E, [2009-10-28T11:46:57.490209 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz215/anatomicals/S1_3-Plane:
402
+ E, [2009-10-28T11:46:57.650649 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz216... skipping.
403
+ E, [2009-10-28T11:46:57.656344 #1039] ERROR -- : Exception message:
404
+ E, [2009-10-28T11:46:57.817342 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz217... skipping.
405
+ E, [2009-10-28T11:46:57.822765 #1039] ERROR -- : Exception message:
406
+ E, [2009-10-28T11:46:57.984091 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz218... skipping.
407
+ E, [2009-10-28T11:46:58.017420 #1039] ERROR -- : Exception message:
408
+ E, [2009-10-28T11:46:58.069657 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz219... skipping.
409
+ E, [2009-10-28T11:46:58.075385 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz219/anatomicals/S1_3-Plane:
410
+ E, [2009-10-28T11:46:58.234440 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz220... skipping.
411
+ E, [2009-10-28T11:46:58.239792 #1039] ERROR -- : Exception message:
412
+ E, [2009-10-28T11:46:58.318557 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz221... skipping.
413
+ E, [2009-10-28T11:46:58.323982 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz221/anatomicals/S1_3-Plane:
414
+ E, [2009-10-28T11:46:58.484499 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz222... skipping.
415
+ E, [2009-10-28T11:46:58.490132 #1039] ERROR -- : Exception message:
416
+ E, [2009-10-28T11:46:58.651260 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz223... skipping.
417
+ E, [2009-10-28T11:46:58.657018 #1039] ERROR -- : Exception message:
418
+ E, [2009-10-28T11:46:58.817928 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz224... skipping.
419
+ E, [2009-10-28T11:46:58.823656 #1039] ERROR -- : Exception message:
420
+ E, [2009-10-28T11:46:58.901640 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz225... skipping.
421
+ E, [2009-10-28T11:46:58.907628 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz225/anatomicals/S1_3-Plane:
422
+ E, [2009-10-28T11:46:59.067865 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz226... skipping.
423
+ E, [2009-10-28T11:46:59.073068 #1039] ERROR -- : Exception message:
424
+ E, [2009-10-28T11:46:59.152658 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz227... skipping.
425
+ E, [2009-10-28T11:46:59.158520 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz227/anatomicals/S1_3-Plane:
426
+ E, [2009-10-28T11:46:59.235493 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz228... skipping.
427
+ E, [2009-10-28T11:46:59.240967 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz228/anatomicals/S1_3-Plane:
428
+ E, [2009-10-28T11:46:59.319004 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz229... skipping.
429
+ E, [2009-10-28T11:46:59.324667 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz229/anatomicals/S1_3-Plane:
430
+ E, [2009-10-28T11:46:59.484484 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz230... skipping.
431
+ E, [2009-10-28T11:46:59.490046 #1039] ERROR -- : Exception message:
432
+ E, [2009-10-28T11:46:59.569142 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz231... skipping.
433
+ E, [2009-10-28T11:46:59.574761 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz231/anatomicals/S1_FGRE:
434
+ E, [2009-10-28T11:46:59.652015 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz232... skipping.
435
+ E, [2009-10-28T11:46:59.657711 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz232/anatomicals/S1_FGRE:
436
+ E, [2009-10-28T11:46:59.817890 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz233... skipping.
437
+ E, [2009-10-28T11:46:59.823599 #1039] ERROR -- : Exception message:
438
+ E, [2009-10-28T11:46:59.902249 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz234... skipping.
439
+ E, [2009-10-28T11:46:59.909558 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz234/anatomicals/S1_FGRE:
440
+ E, [2009-10-28T11:47:00.068130 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz236... skipping.
441
+ E, [2009-10-28T11:47:00.073992 #1039] ERROR -- : Exception message:
442
+ E, [2009-10-28T11:47:00.152325 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz237... skipping.
443
+ E, [2009-10-28T11:47:00.158176 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz237/anatomicals/S1_FGRE:
444
+ E, [2009-10-28T11:47:00.318167 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz238... skipping.
445
+ E, [2009-10-28T11:47:00.323828 #1039] ERROR -- : Exception message:
446
+ E, [2009-10-28T11:47:00.484820 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz239... skipping.
447
+ E, [2009-10-28T11:47:00.490467 #1039] ERROR -- : Exception message:
448
+ E, [2009-10-28T11:47:00.569135 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz240... skipping.
449
+ E, [2009-10-28T11:47:00.574659 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz240/anatomicals/S1_FGRE:
450
+ E, [2009-10-28T11:47:00.652267 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz241... skipping.
451
+ E, [2009-10-28T11:47:00.657865 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz241/anatomicals/S1_FGRE:
452
+ E, [2009-10-28T11:47:00.818273 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz242... skipping.
453
+ E, [2009-10-28T11:47:00.823760 #1039] ERROR -- : Exception message:
454
+ E, [2009-10-28T11:47:00.902428 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz243... skipping.
455
+ E, [2009-10-28T11:47:00.908206 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz243/anatomicals/S1_FGRE:
456
+ E, [2009-10-28T11:47:01.068388 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz244... skipping.
457
+ E, [2009-10-28T11:47:01.073905 #1039] ERROR -- : Exception message:
458
+ E, [2009-10-28T11:47:01.152807 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz245... skipping.
459
+ E, [2009-10-28T11:47:01.158588 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz245/anatomicals/S1_FGRE:
460
+ E, [2009-10-28T11:47:01.318504 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz246... skipping.
461
+ E, [2009-10-28T11:47:01.337987 #1039] ERROR -- : Exception message:
462
+ E, [2009-10-28T11:47:01.403565 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz247... skipping.
463
+ E, [2009-10-28T11:47:01.413182 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz247/anatomicals/S1_FGRE:
464
+ E, [2009-10-28T11:47:01.486860 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz248... skipping.
465
+ E, [2009-10-28T11:47:01.492636 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz248/anatomicals/S1_FGRE:
466
+ E, [2009-10-28T11:47:01.569682 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz249... skipping.
467
+ E, [2009-10-28T11:47:01.579592 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz249/anatomicals/S1_FGRE:
468
+ E, [2009-10-28T11:47:01.652646 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz250... skipping.
469
+ E, [2009-10-28T11:47:01.658532 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz250/anatomicals/S1_FGRE:
470
+ E, [2009-10-28T11:47:01.735115 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz251... skipping.
471
+ E, [2009-10-28T11:47:01.740969 #1039] ERROR -- : Exception message:
472
+ E, [2009-10-28T11:47:01.901889 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz252... skipping.
473
+ E, [2009-10-28T11:47:01.907872 #1039] ERROR -- : Exception message:
474
+ E, [2009-10-28T11:47:02.068621 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz253... skipping.
475
+ E, [2009-10-28T11:47:02.074816 #1039] ERROR -- : Exception message:
476
+ E, [2009-10-28T11:47:02.235358 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz254... skipping.
477
+ E, [2009-10-28T11:47:02.241211 #1039] ERROR -- : Exception message:
478
+ E, [2009-10-28T11:47:02.318611 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz255... skipping.
479
+ E, [2009-10-28T11:47:02.324419 #1039] ERROR -- : Exception message:
480
+ E, [2009-10-28T11:47:02.485426 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz256... skipping.
481
+ E, [2009-10-28T11:47:02.491301 #1039] ERROR -- : Exception message:
482
+ E, [2009-10-28T11:47:02.569627 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz257... skipping.
483
+ E, [2009-10-28T11:47:02.575749 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz257/anatomicals/S1_FGRE:
484
+ E, [2009-10-28T11:47:02.653108 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz258... skipping.
485
+ E, [2009-10-28T11:47:02.659197 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz258/anatomicals/S1_FGRE:
486
+ E, [2009-10-28T11:47:02.736304 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz259... skipping.
487
+ E, [2009-10-28T11:47:02.742395 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz259/anatomicals/S1_FGRE:
488
+ E, [2009-10-28T11:47:02.902626 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz260... skipping.
489
+ E, [2009-10-28T11:47:02.909041 #1039] ERROR -- : Exception message:
490
+ E, [2009-10-28T11:47:03.069345 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz261... skipping.
491
+ E, [2009-10-28T11:47:03.075730 #1039] ERROR -- : Exception message:
492
+ E, [2009-10-28T11:47:03.153543 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz262... skipping.
493
+ E, [2009-10-28T11:47:03.159679 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz262/anatomicals/S1_FGRE:
494
+ E, [2009-10-28T11:47:03.319265 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz263... skipping.
495
+ E, [2009-10-28T11:47:03.325323 #1039] ERROR -- : Exception message:
496
+ E, [2009-10-28T11:47:03.486063 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz264... skipping.
497
+ E, [2009-10-28T11:47:03.492227 #1039] ERROR -- : Exception message:
498
+ E, [2009-10-28T11:47:03.652715 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz265... skipping.
499
+ E, [2009-10-28T11:47:03.659120 #1039] ERROR -- : Exception message:
500
+ E, [2009-10-28T11:47:03.824189 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz266... skipping.
501
+ E, [2009-10-28T11:47:03.830021 #1039] ERROR -- : Exception message:
502
+ E, [2009-10-28T11:47:03.904290 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz267... skipping.
503
+ E, [2009-10-28T11:47:03.910482 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz267/anatomicals/S1_FGRE:
504
+ E, [2009-10-28T11:47:03.987764 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz268... skipping.
505
+ E, [2009-10-28T11:47:03.998488 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz268/anatomicals/S1_FGRE:
506
+ E, [2009-10-28T11:47:04.070754 #1039] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz269... skipping.
507
+ E, [2009-10-28T11:47:04.076922 #1039] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz269/anatomicals/S1_FGRE:
508
+ E, [2009-10-28T11:51:30.673950 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz056... skipping.
509
+ E, [2009-10-28T11:51:30.678970 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz056/raw:
510
+ E, [2009-10-28T11:51:31.172978 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz061... skipping.
511
+ E, [2009-10-28T11:51:31.179191 #2383] ERROR -- : Exception message:
512
+ E, [2009-10-28T11:51:31.256272 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz101... skipping.
513
+ E, [2009-10-28T11:51:31.262629 #2383] ERROR -- : Exception message:
514
+ E, [2009-10-28T11:51:31.339560 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz061_B... skipping.
515
+ E, [2009-10-28T11:51:31.345825 #2383] ERROR -- : Exception message:
516
+ E, [2009-10-28T11:51:31.422862 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz090... skipping.
517
+ E, [2009-10-28T11:51:31.429272 #2383] ERROR -- : Exception message:
518
+ E, [2009-10-28T11:51:31.589111 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz064... skipping.
519
+ E, [2009-10-28T11:51:31.595428 #2383] ERROR -- : Exception message:
520
+ E, [2009-10-28T11:51:31.673200 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz065... skipping.
521
+ E, [2009-10-28T11:51:31.679364 #2383] ERROR -- : Exception message:
522
+ E, [2009-10-28T11:51:31.759256 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz001... skipping.
523
+ E, [2009-10-28T11:51:31.765327 #2383] ERROR -- : Exception message:
524
+ E, [2009-10-28T11:51:31.922315 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz003... skipping.
525
+ E, [2009-10-28T11:51:31.928709 #2383] ERROR -- : Exception message:
526
+ E, [2009-10-28T11:51:32.007070 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz004... skipping.
527
+ E, [2009-10-28T11:51:32.013702 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz004/anatomicals/S1:
528
+ E, [2009-10-28T11:51:32.173308 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz005... skipping.
529
+ E, [2009-10-28T11:51:32.179871 #2383] ERROR -- : Exception message:
530
+ E, [2009-10-28T11:51:32.261873 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz006... skipping.
531
+ E, [2009-10-28T11:51:32.268293 #2383] ERROR -- : Exception message:
532
+ E, [2009-10-28T11:51:32.340170 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz007... skipping.
533
+ E, [2009-10-28T11:51:32.346498 #2383] ERROR -- : Exception message:
534
+ E, [2009-10-28T11:51:32.423332 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz008... skipping.
535
+ E, [2009-10-28T11:51:32.429438 #2383] ERROR -- : Exception message:
536
+ E, [2009-10-28T11:51:32.507891 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz009... skipping.
537
+ E, [2009-10-28T11:51:32.514132 #2383] ERROR -- : Exception message:
538
+ E, [2009-10-28T11:51:32.594932 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz010... skipping.
539
+ E, [2009-10-28T11:51:32.601342 #2383] ERROR -- : Exception message:
540
+ E, [2009-10-28T11:51:32.676719 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz011... skipping.
541
+ E, [2009-10-28T11:51:32.683044 #2383] ERROR -- : Exception message:
542
+ E, [2009-10-28T11:51:32.840148 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz012... skipping.
543
+ E, [2009-10-28T11:51:32.846928 #2383] ERROR -- : Exception message:
544
+ E, [2009-10-28T11:51:32.925335 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz013... skipping.
545
+ E, [2009-10-28T11:51:32.931893 #2383] ERROR -- : Exception message:
546
+ E, [2009-10-28T11:51:33.010587 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz014... skipping.
547
+ E, [2009-10-28T11:51:33.017360 #2383] ERROR -- : Exception message:
548
+ E, [2009-10-28T11:51:33.090321 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz015... skipping.
549
+ E, [2009-10-28T11:51:33.097112 #2383] ERROR -- : Exception message:
550
+ E, [2009-10-28T11:51:33.173484 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz016... skipping.
551
+ E, [2009-10-28T11:51:33.176993 #2383] ERROR -- : Exception message:
552
+ E, [2009-10-28T11:51:33.257741 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz017... skipping.
553
+ E, [2009-10-28T11:51:33.261441 #2383] ERROR -- : Exception message:
554
+ E, [2009-10-28T11:51:33.340540 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz018... skipping.
555
+ E, [2009-10-28T11:51:33.345650 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz018/anatomicals/S1:
556
+ E, [2009-10-28T11:51:33.423767 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz019... skipping.
557
+ E, [2009-10-28T11:51:33.427584 #2383] ERROR -- : Exception message:
558
+ E, [2009-10-28T11:51:33.505987 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz020... skipping.
559
+ E, [2009-10-28T11:51:33.509785 #2383] ERROR -- : Exception message:
560
+ E, [2009-10-28T11:51:33.590579 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz021... skipping.
561
+ E, [2009-10-28T11:51:33.594726 #2383] ERROR -- : Exception message:
562
+ E, [2009-10-28T11:51:33.673902 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz023... skipping.
563
+ E, [2009-10-28T11:51:33.677682 #2383] ERROR -- : Exception message:
564
+ E, [2009-10-28T11:51:33.757057 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz025... skipping.
565
+ E, [2009-10-28T11:51:33.764626 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz025/anatomicals/S1:
566
+ E, [2009-10-28T11:51:33.848425 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz026... skipping.
567
+ E, [2009-10-28T11:51:33.852332 #2383] ERROR -- : Exception message:
568
+ E, [2009-10-28T11:51:33.924177 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz027... skipping.
569
+ E, [2009-10-28T11:51:33.928277 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz027/anatomicals/S1:
570
+ E, [2009-10-28T11:51:34.007171 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz028... skipping.
571
+ E, [2009-10-28T11:51:34.011006 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz028/anatomicals/S1:
572
+ E, [2009-10-28T11:51:34.090515 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz029... skipping.
573
+ E, [2009-10-28T11:51:34.094433 #2383] ERROR -- : Exception message:
574
+ E, [2009-10-28T11:51:34.173688 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz030... skipping.
575
+ E, [2009-10-28T11:51:34.177899 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz030/anatomicals/S1:
576
+ E, [2009-10-28T11:51:34.257100 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz031... skipping.
577
+ E, [2009-10-28T11:51:34.261342 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz031/anatomicals/S1:
578
+ E, [2009-10-28T11:51:34.340428 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz032... skipping.
579
+ E, [2009-10-28T11:51:34.348552 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz032/anatomicals/S1:
580
+ E, [2009-10-28T11:51:34.423877 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz033... skipping.
581
+ E, [2009-10-28T11:51:34.428241 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz033/anatomicals/S1:
582
+ E, [2009-10-28T11:51:34.507405 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz034... skipping.
583
+ E, [2009-10-28T11:51:34.511484 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz034/anatomicals/S1:
584
+ E, [2009-10-28T11:51:34.592093 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz035... skipping.
585
+ E, [2009-10-28T11:51:34.596142 #2383] ERROR -- : Exception message:
586
+ E, [2009-10-28T11:51:34.674047 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz036... skipping.
587
+ E, [2009-10-28T11:51:34.678353 #2383] ERROR -- : Exception message:
588
+ E, [2009-10-28T11:51:34.757268 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz037... skipping.
589
+ E, [2009-10-28T11:51:34.761547 #2383] ERROR -- : Exception message:
590
+ E, [2009-10-28T11:51:34.924904 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz039_A... skipping.
591
+ E, [2009-10-28T11:51:34.928959 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz039_A/anatomicals/S5:
592
+ E, [2009-10-28T11:51:35.008264 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz039_B... skipping.
593
+ E, [2009-10-28T11:51:35.012411 #2383] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/alz_2000/alz039_B/anatomicals/S1:
594
+ E, [2009-10-28T11:51:35.090808 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz040... skipping.
595
+ E, [2009-10-28T11:51:35.095134 #2383] ERROR -- : Exception message:
596
+ E, [2009-10-28T11:51:35.174245 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz041... skipping.
597
+ E, [2009-10-28T11:51:35.178585 #2383] ERROR -- : Exception message:
598
+ E, [2009-10-28T11:51:35.257515 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz042... skipping.
599
+ E, [2009-10-28T11:51:35.262271 #2383] ERROR -- : Exception message:
600
+ E, [2009-10-28T11:51:35.340801 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz043... skipping.
601
+ E, [2009-10-28T11:51:35.345203 #2383] ERROR -- : Exception message:
602
+ E, [2009-10-28T11:51:35.424327 #2383] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz044... skipping.
603
+ E, [2009-10-28T11:51:35.428653 #2383] ERROR -- : Exception message:
604
+ E, [2009-10-28T13:11:08.520699 #2717] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/alz_2000/alz139... skipping.
605
+ E, [2009-10-28T13:11:08.602587 #2717] ERROR -- : Exception message: No datasets could be scanned for directory /Data/vtrak1/raw/alz_2000/alz139
data/bin/wrap140.scan.log ADDED
@@ -0,0 +1,111 @@
1
+ # Logfile created on Thu Nov 05 12:53:03 -0600 2009 by logger.rb/22285
2
+ E, [2009-11-05T12:53:19.995365 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp001_5917_03042008... skipping.
3
+ E, [2009-11-05T12:53:19.999109 #26320] ERROR -- : Exception message:
4
+ E, [2009-11-05T12:53:20.495643 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp002_5938_03072008... skipping.
5
+ E, [2009-11-05T12:53:20.499581 #26320] ERROR -- : Exception message:
6
+ E, [2009-11-05T12:53:20.579031 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp003_6018_03242008... skipping.
7
+ E, [2009-11-05T12:53:20.582544 #26320] ERROR -- : Exception message:
8
+ E, [2009-11-05T12:53:20.829088 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp004_6104_04072008... skipping.
9
+ E, [2009-11-05T12:53:20.832122 #26320] ERROR -- : Exception message:
10
+ E, [2009-11-05T12:53:20.912302 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp005_6129_04102008... skipping.
11
+ E, [2009-11-05T12:53:20.915813 #26320] ERROR -- : Exception message:
12
+ E, [2009-11-05T12:53:20.995721 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp006_6136_04112008... skipping.
13
+ E, [2009-11-05T12:53:20.999756 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp006_6136_04112008/001:
14
+ E, [2009-11-05T12:53:21.079059 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp007_6181_04182008... skipping.
15
+ E, [2009-11-05T12:53:21.082760 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp007_6181_04182008/001:
16
+ E, [2009-11-05T12:53:21.162494 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp008_6202_04222008... skipping.
17
+ E, [2009-11-05T12:53:21.171955 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp008_6202_04222008/001:
18
+ E, [2009-11-05T12:53:21.245745 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp009_6394_05282008... skipping.
19
+ E, [2009-11-05T12:53:21.249399 #26320] ERROR -- : Exception message:
20
+ E, [2009-11-05T12:53:21.329462 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp010_6426_06032008... skipping.
21
+ E, [2009-11-05T12:53:21.333604 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp010_6426_06032008/001:
22
+ E, [2009-11-05T12:53:21.412560 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp011_6435_06042008... skipping.
23
+ E, [2009-11-05T12:53:21.426048 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp011_6435_06042008/001:
24
+ E, [2009-11-05T12:53:21.495825 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp012_6440_06052008... skipping.
25
+ E, [2009-11-05T12:53:21.499494 #26320] ERROR -- : Exception message:
26
+ E, [2009-11-05T12:53:21.579242 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp013_6468_06102008... skipping.
27
+ E, [2009-11-05T12:53:21.590203 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp013_6468_06102008/001:
28
+ E, [2009-11-05T12:53:21.662447 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp014_6499_06162008... skipping.
29
+ E, [2009-11-05T12:53:21.666391 #26320] ERROR -- : Exception message:
30
+ E, [2009-11-05T12:53:21.745880 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp015_6531_06202008... skipping.
31
+ E, [2009-11-05T12:53:21.749844 #26320] ERROR -- : Exception message:
32
+ E, [2009-11-05T12:53:21.829198 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp016_6532_06202008... skipping.
33
+ E, [2009-11-05T12:53:21.833290 #26320] ERROR -- : Exception message:
34
+ E, [2009-11-05T12:53:21.912634 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp017_6544_06232008... skipping.
35
+ E, [2009-11-05T12:53:21.924735 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp017_6544_06232008/001:
36
+ E, [2009-11-05T12:53:21.995975 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp018_6648_07102008... skipping.
37
+ E, [2009-11-05T12:53:21.999943 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp018_6648_07102008/001:
38
+ E, [2009-11-05T12:53:22.079364 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp019_6660_07112008... skipping.
39
+ E, [2009-11-05T12:53:22.085679 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp019_6660_07112008/001:
40
+ E, [2009-11-05T12:53:22.162983 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp020_6674_07142008... skipping.
41
+ E, [2009-11-05T12:53:22.175616 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp020_6674_07142008/001:
42
+ E, [2009-11-05T12:53:22.255801 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp021_6688_07162008... skipping.
43
+ E, [2009-11-05T12:53:22.260078 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp021_6688_07162008/001:
44
+ E, [2009-11-05T12:53:22.329432 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp022_6736_07232008... skipping.
45
+ E, [2009-11-05T12:53:22.333775 #26320] ERROR -- : Exception message:
46
+ E, [2009-11-05T12:53:22.412936 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp023_6766_07282008... skipping.
47
+ E, [2009-11-05T12:53:22.416974 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp023_6766_07282008/001:
48
+ E, [2009-11-05T12:53:22.496115 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp024_6774_07292008... skipping.
49
+ E, [2009-11-05T12:53:22.500418 #26320] ERROR -- : Exception message:
50
+ E, [2009-11-05T12:53:22.579539 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp025_6796_08012008... skipping.
51
+ E, [2009-11-05T12:53:22.583869 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp025_6796_08012008/001:
52
+ E, [2009-11-05T12:53:22.662921 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp026_6860_08132008... skipping.
53
+ E, [2009-11-05T12:53:22.671562 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp026_6860_08132008/001:
54
+ E, [2009-11-05T12:53:22.746149 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp027_6882_08182008... skipping.
55
+ E, [2009-11-05T12:53:22.750756 #26320] ERROR -- : Exception message:
56
+ E, [2009-11-05T12:53:22.829559 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp028_6898_08022008... skipping.
57
+ E, [2009-11-05T12:53:22.833962 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp028_6898_08022008/001:
58
+ E, [2009-11-05T12:53:22.912860 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp029_6913_08222008... skipping.
59
+ E, [2009-11-05T12:53:22.917161 #26320] ERROR -- : Exception message:
60
+ E, [2009-11-05T12:53:23.001668 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp030_6925_08252008... skipping.
61
+ E, [2009-11-05T12:53:23.006116 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp030_6925_08252008/001:
62
+ E, [2009-11-05T12:53:23.079612 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp031_6933_08262008... skipping.
63
+ E, [2009-11-05T12:53:23.083854 #26320] ERROR -- : Exception message:
64
+ E, [2009-11-05T12:53:23.163032 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp032_6944_08272008... skipping.
65
+ E, [2009-11-05T12:53:23.177538 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp032_6944_08272008/001:
66
+ E, [2009-11-05T12:53:23.246326 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp033_6974_09032008... skipping.
67
+ E, [2009-11-05T12:53:23.250748 #26320] ERROR -- : Exception message:
68
+ E, [2009-11-05T12:53:23.329707 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp034_6980_09042008... skipping.
69
+ E, [2009-11-05T12:53:23.334197 #26320] ERROR -- : Exception message:
70
+ E, [2009-11-05T12:53:23.413118 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp035_7057_09182008... skipping.
71
+ E, [2009-11-05T12:53:23.417648 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp035_7057_09182008/001:
72
+ E, [2009-11-05T12:53:23.496516 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp037_7076_09222008... skipping.
73
+ E, [2009-11-05T12:53:23.506841 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp037_7076_09222008/001:
74
+ E, [2009-11-05T12:53:23.579763 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp038_7173_10092008... skipping.
75
+ E, [2009-11-05T12:53:23.584055 #26320] ERROR -- : Exception message:
76
+ E, [2009-11-05T12:53:23.663078 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp039_7188_10132008... skipping.
77
+ E, [2009-11-05T12:53:23.667739 #26320] ERROR -- : Exception message:
78
+ E, [2009-11-05T12:53:23.746517 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp040_7196_10142008... skipping.
79
+ E, [2009-11-05T12:53:23.750941 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp040_7196_10142008/001:
80
+ E, [2009-11-05T12:53:23.829897 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp041_7242_10222008... skipping.
81
+ E, [2009-11-05T12:53:23.834388 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp041_7242_10222008/001:
82
+ E, [2009-11-05T12:53:23.913203 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp042_7283_10282008... skipping.
83
+ E, [2009-11-05T12:53:23.917831 #26320] ERROR -- : Exception message:
84
+ E, [2009-11-05T12:53:23.996695 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp043_7351_11062008... skipping.
85
+ E, [2009-11-05T12:53:24.001300 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp043_7351_11062008/001:
86
+ E, [2009-11-05T12:53:24.079995 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp045_7560_12112008... skipping.
87
+ E, [2009-11-05T12:53:24.085044 #26320] ERROR -- : Exception message:
88
+ E, [2009-11-05T12:53:24.163290 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp046_7570_12122008... skipping.
89
+ E, [2009-11-05T12:53:24.167985 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp046_7570_12122008/001:
90
+ E, [2009-11-05T12:53:24.246611 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp047_7578_12152008... skipping.
91
+ E, [2009-11-05T12:53:24.251672 #26320] ERROR -- : Exception message:
92
+ E, [2009-11-05T12:53:24.414334 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp048_7614_12222008... skipping.
93
+ E, [2009-11-05T12:53:24.419086 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp048_7614_12222008/002:
94
+ E, [2009-11-05T12:53:24.496678 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp049_7658_01052009... skipping.
95
+ E, [2009-11-05T12:53:24.501519 #26320] ERROR -- : Exception message:
96
+ E, [2009-11-05T12:53:24.580019 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp050_7759_012322009... skipping.
97
+ E, [2009-11-05T12:53:24.584716 #26320] ERROR -- : Exception message:
98
+ E, [2009-11-05T12:53:24.664135 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp051_7886_02162009... skipping.
99
+ E, [2009-11-05T12:53:24.669160 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp051_7886_02162009/001:
100
+ E, [2009-11-05T12:53:24.747599 #26320] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp052_7927_02242009... skipping.
101
+ E, [2009-11-05T12:53:24.757115 #26320] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp052_7927_02242009/001:
102
+ E, [2009-11-06T09:11:09.829367 #31361] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp046_7570_12122008... skipping.
103
+ E, [2009-11-06T09:11:10.095648 #31361] ERROR -- : Exception message:
104
+ E, [2009-11-06T09:11:11.092551 #31361] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp047_7578_12152008... skipping.
105
+ E, [2009-11-06T09:11:11.108534 #31361] ERROR -- : Exception message:
106
+ E, [2009-11-06T09:11:11.592899 #31361] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp048_7614_12222008... skipping.
107
+ E, [2009-11-06T09:11:11.602532 #31361] ERROR -- : Exception message: There was an error scaning dataset /Data/vtrak1/raw/wrap140/wrp048_7614_12222008/002:
108
+ E, [2009-11-06T09:11:11.675830 #31361] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp049_7658_01052009... skipping.
109
+ E, [2009-11-06T09:11:11.702457 #31361] ERROR -- : Exception message:
110
+ E, [2009-11-06T09:11:11.759292 #31361] ERROR -- : There was a problem scanning a dataset in /Data/vtrak1/raw/wrap140/wrp050_7759_012322009... skipping.
111
+ E, [2009-11-06T09:11:11.789401 #31361] ERROR -- : Exception message:
data/lib/nifti_builder.rb ADDED
@@ -0,0 +1,28 @@
1
+ #!/usr/bin/env ruby
2
+
3
+ =begin rdoc
4
+ Builds Nifti files from Dicoms.
5
+ =end
6
+
7
+ TO3D_CMD = 'to3d'
8
+
9
+ module UnknownImageDataset
10
+ def dataset_to_nifti(nifti_output_directory, nifti_filename, input_options = {} )
11
+ if input_options.has_key?(:dicom_files)
12
+ input_files = input_options[:dicom_files].each {|file| file.to_s }.join(' ')
13
+ elsif input_options.has_key?(:input_directory)
14
+ input_files = "#{input_options[:input_directory]}/'#{glob}'"
15
+ else input_files = "#{Dir.tmpdir}/'#{glob}'"
16
+ end
17
+
18
+ nifti_output_directory = File.join(nifti_output_directory, 'unknown') if input_options[:append_modality_directory]
19
+ nifti_output_file = File.join(nifti_output_directory, nifti_filename)
20
+
21
+ File.makedirs(nifti_output_directory) unless File.directory?(nifti_output_directory)
22
+ raise(IOError, "Cannot write to #{nifti_output_directory}") unless File.writable?(nifti_output_directory)
23
+
24
+ nifti_conversion_command = "#{TO3D_CMD} -session #{nifti_output_directory} -prefix #{nifti_filename} #{input_files}"
25
+
26
+ return nifti_conversion_command, nifti_output_file
27
+ end
28
+ end
data/lib/raw_image_dataset.rb CHANGED
@@ -1,6 +1,8 @@
1
1
 
2
2
  require 'rubygems'
3
3
  require 'sqlite3'
4
+ require 'nifti_builder'
5
+ require 'ftools'
4
6
 
5
7
  =begin rdoc
6
8
  A #Dataset defines a single 3D or 4D image, i.e. either a volume or a time series
@@ -25,8 +27,7 @@ class RawImageDataset
25
27
  # the file scanned
26
28
  attr_reader :scanned_file
27
29
  # the scanner source
28
- attr_reader :scanner_source
29
-
30
+ attr_reader :scanner_source
30
31
 
31
32
  =begin rdoc
32
33
  * dir: The directory containing the files.
@@ -37,10 +38,14 @@ class RawImageDataset
37
38
  * any of the raw image files is not actually a RawImageFile => IndexError
38
39
  * series description, rmr number, or timestamp cannot be extracted from the first RawImageFile => IndexError
39
40
  =end
40
- def initialize(directory, raw_image_files)
41
+ def initialize(directory, raw_image_files)
41
42
  @directory = File.expand_path(directory)
42
43
  raise(IOError, "#{@directory} not found.") if not File.directory?(@directory)
43
- raise(IOError, "No raw image files supplied.") if (raw_image_files.nil? or raw_image_files.empty?)
44
+ raise(IOError, "No raw image files supplied.") unless raw_image_files
45
+
46
+ # If only a single raw_image_file was supplied, put it into an array for processing.
47
+ raw_image_files = [raw_image_files] if raw_image_files.class.to_s == "RawImageFile"
48
+
44
49
  raw_image_files.each do |im|
45
50
  raise(IndexError, im.to_s + " is not a RawImageFile") if im.class.to_s != "RawImageFile"
46
51
  end
@@ -94,7 +99,10 @@ at the visit level, or even higher when doing a whole file system scan.
94
99
  AND path = '#{@directory}'
95
100
  AND timestamp LIKE '#{@timestamp.to_s.split(/\+|Z/).first}%'"
96
101
  end
97
-
102
+
103
+ =begin rdoc
104
+ Returns a hash of attributes used for insertion into active record.
105
+ =end
98
106
  def attributes_for_active_record
99
107
  { :rmr => @rmr_number,
100
108
  :series_description => @series_description,
@@ -106,8 +114,35 @@ at the visit level, or even higher when doing a whole file system scan.
106
114
  :slices_per_volume => @raw_image_files.first.num_slices,
107
115
  :scanned_file => @scanned_file }
108
116
  end
109
-
110
117
 
118
+ =begin rdoc
119
+ Implements an api for changing image datasets into usable nifti files.
120
+ Pass in an output path and filename.
121
+ The to3d code is applied as a mixed-in module.
122
+ Returns the to3d command that creates the specified options.
123
+ =end
124
+ def to_nifti(nifti_output_directory, nifti_filename, input_options = {} )
125
+ extend(UnknownImageDataset)
126
+ nifti_conversion_command, nifti_output_file = self.dataset_to_nifti(nifti_output_directory, nifti_filename, input_options)
127
+ return nifti_conversion_command, nifti_output_file
128
+ end
129
+
130
+ =begin rdoc
131
+ Uses to3d to create the nifti file as specified by to_nifti.
132
+
133
+ Returns a path to the created dataset as a string if successful.
134
+ =end
135
+ def to_nifti!(nifti_output_directory, nifti_filename, input_options = {} )
136
+ begin
137
+ nifti_conversion_command, nifti_output_file = to_nifti(nifti_output_directory, nifti_filename, input_options)
138
+ puts nifti_conversion_command
139
+ system "#{nifti_conversion_command}"
140
+ raise(IOError, "Could not convert image dataset: #{@directory} to #{nifti_output_file}") unless $? == 0
141
+ rescue IOError => e
142
+ raise "-- Warning: #{e.message}"
143
+ end
144
+ return nifti_conversion_command, nifti_output_file
145
+ end
111
146
 
112
147
  =begin rdoc
113
148
  Returns a globbing wildcard that is used by to3D to gather files for
@@ -135,8 +170,15 @@ have more component files than shell commands can handle.
135
170
  end
136
171
  end
137
172
 
138
- private
173
+ =begin rdoc
174
+
175
+ =end
176
+ def escape_filename(filename)
177
+ filename.gsub(/\s|:/,"-" )
178
+ end
139
179
 
180
+ private
181
+
140
182
  # Gets the earliest timestamp among the raw image files in this dataset.
141
183
  def get_earliest_timestamp
142
184
  @timestamp = (@raw_image_files.sort_by { |i| i.timestamp }).first.timestamp
data/lib/raw_image_file.rb CHANGED
@@ -74,7 +74,7 @@ temporary file.
74
74
  raise(IOError, "File not found.") if not File.exists?(absfilepath)
75
75
  @filename = File.basename(absfilepath)
76
76
 
77
- # try to read the header, raise an ioerror if unsuccessful
77
+ # try to read the header, raise an IOError if unsuccessful
78
78
  begin
79
79
  @hdr_data, @hdr_reader = read_header(absfilepath)
80
80
  #puts "@hdr_data: #{@hdr_data}; @hdr_reader: #{@hdr_reader}"
data/lib/visit_raw_data_directory.rb CHANGED
@@ -45,7 +45,13 @@ class VisitRawDataDirectory
45
45
  attr_reader :scan_procedure_name
46
46
  # scanner source
47
47
  attr_reader :scanner_source
48
+ #
48
49
  attr_accessor :db
50
+ # Scan ID is the short name for the scan (tbiva018, tbiva018b)
51
+ attr_accessor :scanid
52
+
53
+ PREPROCESS_REPOSITORY_DIRECTORY = '/Data/vtrak1/preprocessed/visits'
54
+
49
55
 
50
56
  # A new Visit instance needs to know the path to its raw data and scan_procedure name. The scan_procedure
51
57
  # name must match a name in the database, if not a new scan_procedure entry will be inserted.
@@ -133,6 +139,38 @@ class VisitRawDataDirectory
133
139
  end
134
140
  end
135
141
 
142
+ def default_preprocess_directory
143
+ return File.join(PREPROCESS_REPOSITORY_DIRECTORY, scan_procedure_name, scanid)
144
+ end
145
+
146
+ =begin rdoc
147
+ Walks through the dicom datasets in this Scan Visit directory and performs naive file conversion to nifti format, which is useful for basic quality checking.
148
+ Accepts an output directory as an optional argument, defaults to the system temp directory.
149
+ Returns an array of the created nifti files.
150
+ =end
151
+ def to_nifti!(output_directory = Dir.tmpdir)
152
+ flash "Converting raw data directory #{@visit_directory} to Niftis in #{output_directory}"
153
+ nifti_output_files = Array.new
154
+
155
+ scan if @datasets.empty?
156
+
157
+ @datasets.each do |dataset|
158
+ nifti_output_path = output_directory
159
+ nifti_filename = "#{scanid}_#{dataset.escape_filename(dataset.series_description)}_#{File.basename(dataset.directory)}.nii"
160
+
161
+ Pathname.new(dataset.directory).all_dicoms do |dicom_files|
162
+ nifti_conversion_command, nifti_output_file = dataset.to_nifti!(nifti_output_path, nifti_filename, :input_directory => @working_directory, :append_modality_directory => true)
163
+ nifti_output_files << nifti_output_file
164
+ end
165
+ end
166
+
167
+ return nifti_output_files
168
+ end
169
+
170
+ def scanid
171
+ @scanid ||= File.basename(visit_directory).split('_')[0]
172
+ end
173
+
136
174
  private
137
175
 
138
176
  def get_existing_dataset_id(ds)
@@ -220,7 +258,9 @@ class VisitRawDataDirectory
220
258
  "SELECT * FROM image_datasets WHERE rmr = '#{ds.rmr_number}' AND path = '#{ds.directory}' AND timestamp = '#{ds.timestamp}'"
221
259
  end
222
260
 
223
- # generates an sql insert statement to insert this visit with a given participant id
261
+ =begin rdoc
262
+ generates an sql insert statement to insert this visit with a given participant id
263
+ =end
224
264
  def sql_insert_visit(scan_procedure_id=0)
225
265
  "INSERT INTO visits
226
266
  (date, scan_procedure_id, scan_number, initials, rmr, radiology_outcome, notes, transfer_mri, transfer_pet,
@@ -242,6 +282,25 @@ class VisitRawDataDirectory
242
282
  return RawImageDataset.new(original_parent_directory.to_s, [rawimagefile])
243
283
  end
244
284
 
285
+ def convert_dataset(rawfiles, original_parent_directory, nifti_output_directory)
286
+ puts "Converting scan session: #{original_parent_directory.to_s} using raw data file: #{rawfiles.first.basename}"
287
+ rawimagefiles = []
288
+
289
+ rawfiles.each do |rawfile|
290
+ begin
291
+ rawimagefiles << RawImageFile.new(rawfile.to_s)
292
+ rescue Exception => e
293
+ raise(IOError, "Trouble reading raw image file #{rawfile}. #{e}")
294
+ end
295
+ end
296
+
297
+ dataset = RawImageDataset.new(original_parent_directory.to_s, rawimagefiles)
298
+ dataset.to_nifti()
299
+
300
+ #return RawImageDataset.new(original_parent_directory.to_s, rawimagefiles)
301
+
302
+ end
303
+
245
304
  def get_visit_timestamp
246
305
  (@datasets.sort_by { |ds| ds.timestamp }).first.timestamp
247
306
  end
@@ -325,6 +384,8 @@ class VisitRawDataDirectory
325
384
  return 'unknown.scan_procedure'
326
385
  end
327
386
  end
387
+
388
+
328
389
 
329
390
  end
330
391
 
@@ -381,6 +442,28 @@ class Pathname
381
442
  end
382
443
  end
383
444
 
445
+ def all_dicoms
446
+ local_copies = []
447
+ begin
448
+
449
+ entries.each do |leaf|
450
+ branch = self + leaf
451
+ if leaf.to_s =~ /^I\.|\.dcm(\.bz2)?$|\.0[0-9]+(\.bz2)?$/
452
+ local_copies << branch.local_copy
453
+ end
454
+ end
455
+
456
+ yield local_copies
457
+
458
+ ensure
459
+ local_copies.each { |lc| lc.delete }
460
+ end
461
+
462
+ return
463
+ end
464
+
465
+
466
+
384
467
  def local_copy
385
468
  tfbase = self.to_s =~ /\.bz2$/ ? self.basename.to_s.chomp(".bz2") : self.basename.to_s
386
469
  tmpfile = File.join(Dir.tmpdir, tfbase)
data/metamri.gemspec CHANGED
@@ -5,14 +5,14 @@
5
5
 
6
6
  Gem::Specification.new do |s|
7
7
  s.name = %q{metamri}
8
- s.version = "0.1.0"
8
+ s.version = "0.1.4"
9
9
 
10
10
  s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
11
11
  s.authors = ["Kristopher J. Kosmatka"]
12
- s.date = %q{2009-12-08}
12
+ s.date = %q{2009-12-11}
13
13
  s.description = %q{Extraction of MRI metadata and insertion into compatible sqlite3 databases.}
14
14
  s.email = %q{kk4@medicine.wisc.edu}
15
- s.executables = ["import_study.rb", "import_visit.rb"]
15
+ s.executables = ["import_study.rb", "import_visit.rb", "alz.visit1.scan.log", "wrap140.scan.log"]
16
16
  s.extra_rdoc_files = [
17
17
  "README.rdoc"
18
18
  ]
@@ -26,11 +26,13 @@ Gem::Specification.new do |s|
26
26
  "bin/import_visit.rb",
27
27
  "lib/metamri.rb",
28
28
  "lib/mysql_tools.rb",
29
+ "lib/nifti_builder.rb",
29
30
  "lib/raw_image_dataset.rb",
30
31
  "lib/raw_image_file.rb",
31
32
  "lib/series_description_parameters.rb",
32
33
  "lib/visit_raw_data_directory.rb",
33
34
  "metamri.gemspec",
35
+ "test/nifti_builder_spec.rb",
34
36
  "test/raw_image_dataset_test.rb",
35
37
  "test/raw_image_file_test.rb",
36
38
  "test/visit_duplication_test.rb",
@@ -45,7 +47,8 @@ Gem::Specification.new do |s|
45
47
  "test/raw_image_dataset_test.rb",
46
48
  "test/raw_image_file_test.rb",
47
49
  "test/visit_duplication_test.rb",
48
- "test/visit_test.rb"
50
+ "test/visit_test.rb",
51
+ "test/nifti_builder_spec.rb"
49
52
  ]
50
53
 
51
54
  if s.respond_to? :specification_version then
data/test/nifti_builder_spec.rb ADDED
@@ -0,0 +1,85 @@
1
+ $:.unshift File.join(File.dirname(__FILE__),'..','lib')
2
+
3
+ require 'rubygems'
4
+ require 'spec'
5
+ require 'visit_raw_data_directory'
6
+ require 'raw_image_dataset'
7
+ require 'raw_image_file'
8
+
9
+ describe "Convert Unknown Dicoms to Nifti Files" do
10
+
11
+ before(:each) do
12
+ @visit = VisitRawDataDirectory.new('/Data/vtrak1/raw/johnson.tbi-va.visit1/tbiva018b_9336_12022009', 'johnson.tbi-va.visit1')
13
+ @dataset = RawImageDataset.new('/Data/vtrak1/raw/johnson.tbi-va.visit1/tbiva018b_9336_12022009/001', [RawImageFile.new('/Data/vtrak1/raw/johnson.tbi-va.visit1/tbiva018b_9336_12022009/001/I0001.dcm')])
14
+ @test_niftis = Array.new
15
+ @output_directories = Array.new
16
+ end
17
+
18
+ it "should Convert an anatomical from dicom to nifti using original, unzipped files." do
19
+ @dataset.to_nifti('/tmp/', 'filename.nii', :input_directory => '/Data/vtrak1/raw/asthana.adrc-clinical-core.visit1/adrc00001_294_12022009/001')[0].should == "to3d -session /tmp/ -prefix filename.nii /Data/vtrak1/raw/asthana.adrc-clinical-core.visit1/adrc00001_294_12022009/001/'*.dcm'"
20
+ nifti_conversion_command, nifti_output_file = @dataset.to_nifti!('/tmp/', 'filename.nii', :input_directory => '/Data/vtrak1/raw/asthana.adrc-clinical-core.visit1/adrc00001_294_12022009/001')
21
+ nifti_conversion_command.should == "to3d -session /tmp/ -prefix filename.nii /Data/vtrak1/raw/asthana.adrc-clinical-core.visit1/adrc00001_294_12022009/001/'*.dcm'"
22
+ @test_niftis << nifti_output_file
23
+ @output_directories << '/tmp'
24
+ end
25
+
26
+ it "should convert all anatomicals in a visit raw directory using original, unzipped files." do
27
+ @visit.scan
28
+
29
+ @visit.datasets.each do |ds|
30
+ begin
31
+ nifti_filename = "#{@visit.scanid}_#{ds.escape_filename(ds.series_description)}_#{File.basename(ds.directory)}.nii"
32
+ nifti_conversion_commmand, nifti_output_file = ds.to_nifti!(File.join(Dir.tmpdir, @visit.default_preprocess_directory), nifti_filename, :input_directory => @dataset.directory, :append_modality_directory => true )
33
+ @test_niftis << nifti_output_file
34
+ rescue IOError => e
35
+ puts "-- Error: #{e.message}"
36
+ end
37
+ end
38
+
39
+ @output_directories = File.join(@visit.default_preprocess_directory, 'unknown')
40
+ end
41
+
42
+ it "should convert all anatomicals in a visit raw directory using local copy." do
43
+ @test_niftis << @visit.to_nifti!('/tmp')
44
+ end
45
+
46
+ it "should create a good to3d command with input directory or dicom files." do
47
+ nifti_output_path = '/tmp'
48
+ nifti_filename = '001.nii'
49
+ dataset_pathname = Pathname.new(@dataset.directory)
50
+ dataset_pathname.all_dicoms do |dicom_files|
51
+ nifti_conversion_command, nifti_output_file = @dataset.to_nifti(nifti_output_path, nifti_filename)
52
+ nifti_conversion_command.should == "to3d -session /tmp -prefix 001.nii #{Dir.tmpdir}/'*.dcm'"
53
+
54
+
55
+ nifti_conversion_command, nifti_output_file = @dataset.to_nifti(nifti_output_path, nifti_filename, :input_directory => '/tmp')
56
+ nifti_conversion_command.should == "to3d -session /tmp -prefix 001.nii /tmp/'*.dcm'"
57
+
58
+
59
+ nifti_conversion_command, nifti_output_file = @dataset.to_nifti(nifti_output_path, nifti_filename, :dicom_files => dicom_files)
60
+ nifti_conversion_command.should == "to3d -session /tmp -prefix 001.nii #{Dir.tmpdir}/I0001.dcm #{Dir.tmpdir}/I0002.dcm #{Dir.tmpdir}/I0003.dcm #{Dir.tmpdir}/I0004.dcm #{Dir.tmpdir}/I0005.dcm #{Dir.tmpdir}/I0006.dcm #{Dir.tmpdir}/I0007.dcm #{Dir.tmpdir}/I0008.dcm #{Dir.tmpdir}/I0009.dcm #{Dir.tmpdir}/I0010.dcm #{Dir.tmpdir}/I0011.dcm #{Dir.tmpdir}/I0012.dcm #{Dir.tmpdir}/I0013.dcm #{Dir.tmpdir}/I0014.dcm #{Dir.tmpdir}/I0015.dcm"
61
+
62
+ end
63
+ end
64
+
65
+ it "should append a modality if the :append_modality_directory is true." do
66
+ # For an unknown modality:
67
+ nifti_conversion_command, nifti_output_file = @dataset.to_nifti(Dir.tmpdir, 'filename.nii', :append_modality_directory => true)
68
+ nifti_conversion_command.should == "to3d -session #{Dir.tmpdir}/unknown -prefix filename.nii #{Dir.tmpdir}/'*.dcm'"
69
+ end
70
+
71
+ it "should guess scan id" do
72
+ @visit.scanid.should == 'tbiva018b'
73
+
74
+ v = VisitRawDataDirectory.new('/Data/vtrak1/preprocessed/visits/asthana.adrc-clinical-core.visit1/adrc00001', 'asthana.adrc-clinical-core.visit1')
75
+ v.scanid.should == 'adrc00001'
76
+ end
77
+
78
+ after do
79
+ @test_niftis.flatten.each { |nifti| File.delete(nifti) } unless @test_niftis.empty?
80
+ [@output_directories, Dir.tmpdir, '/tmp'].flatten.each do |temp_dir|
81
+ Dir.foreach(temp_dir) {|f| File.delete(File.join(temp_dir, f)) if File.extname(f) == '.nii'}
82
+ end
83
+ end
84
+
85
+ end
metadata CHANGED
@@ -1,7 +1,7 @@
1
1
  --- !ruby/object:Gem::Specification
2
2
  name: metamri
3
3
  version: !ruby/object:Gem::Version
4
- version: 0.1.0
4
+ version: 0.1.4
5
5
  platform: ruby
6
6
  authors:
7
7
  - Kristopher J. Kosmatka
@@ -9,7 +9,7 @@ autorequire:
9
9
  bindir: bin
10
10
  cert_chain: []
11
11
 
12
- date: 2009-12-08 00:00:00 -06:00
12
+ date: 2009-12-11 00:00:00 -06:00
13
13
  default_executable:
14
14
  dependencies: []
15
15
 
@@ -18,6 +18,8 @@ email: kk4@medicine.wisc.edu
18
18
  executables:
19
19
  - import_study.rb
20
20
  - import_visit.rb
21
+ - alz.visit1.scan.log
22
+ - wrap140.scan.log
21
23
  extensions: []
22
24
 
23
25
  extra_rdoc_files:
@@ -32,11 +34,13 @@ files:
32
34
  - bin/import_visit.rb
33
35
  - lib/metamri.rb
34
36
  - lib/mysql_tools.rb
37
+ - lib/nifti_builder.rb
35
38
  - lib/raw_image_dataset.rb
36
39
  - lib/raw_image_file.rb
37
40
  - lib/series_description_parameters.rb
38
41
  - lib/visit_raw_data_directory.rb
39
42
  - metamri.gemspec
43
+ - test/nifti_builder_spec.rb
40
44
  - test/raw_image_dataset_test.rb
41
45
  - test/raw_image_file_test.rb
42
46
  - test/visit_duplication_test.rb
@@ -74,3 +78,4 @@ test_files:
74
78
  - test/raw_image_file_test.rb
75
79
  - test/visit_duplication_test.rb
76
80
  - test/visit_test.rb
81
+ - test/nifti_builder_spec.rb