metamri 0.1.19 → 0.1.20

data/VERSION

@@ -1 +1 @@
-0.1.19
+0.1.20

data/lib/metamri/core_additions.rb

@@ -1,13 +1,11 @@
 require 'tmpdir'
 class String
-
-=begin rdoc
-Does same basic string replacements to ensure valid filenames.
-=end
+  # Does same basic string replacements to ensure valid filenames.
   def escape_filename
     mgsub([[/[\s\:\)\(\/\?\,]+/, "-"], [/\*/, "star"], [/\./,""]])
   end
   
+  # gsub multiple pairs of regexp's
   def mgsub(key_value_pairs=[].freeze)
     regexp_fragments = key_value_pairs.collect { |k,v| k }
     gsub(Regexp.union(*regexp_fragments)) do |match|
@@ -18,7 +16,7 @@ Does same basic string replacements to ensure valid filenames.
 end
 
 class Pathname
-  MIN_PFILE_SIZE = 10_000_000
+  MIN_PFILE_SIZE = 10_000_000 unless MIN_PFILE_SIZE
   
   def each_subdirectory
     each_entry do |leaf|
@@ -49,10 +47,6 @@ class Pathname
     end
   end
   
-  # def first_pfile(&block)
-  #   Pathname.new(filename).local_copy { block }
-  # end
-  
   def first_dicom
     entries.each do |leaf|
       branch = self + leaf
@@ -96,10 +90,11 @@ class Pathname
     tempdir = Dir.mktmpdir('local_orig')
 
     entries.each do |leaf|
-      branch = self + leaf
+      puts branch = self + leaf
       next if branch.directory?
-      next if ignore_patterns.collect { |pat| leaf.to_s =~ pattern } 
+      ignore_patterns.collect { |pat| next if leaf.to_s =~ pattern } 
       next if branch.should_be_skipped
+      puts "Locally provisioning #{leaf}"
       lc = branch.local_copy(tempdir)
       lc.chmod(0444 | 0200 | 0020 )
     end
@@ -117,7 +112,6 @@ class Pathname
   passed a block.  If it is passed a block, it will create the local copy
   and ensure the local copy is deleted.
 =end
-
   def local_copy(tempdir = Dir.mktmpdir, &block)
     tfbase = self.to_s =~ /\.bz2$/ ? self.basename.to_s.chomp(".bz2") : self.basename.to_s
     tfbase.escape_filename

data/metamri.gemspec

@@ -5,11 +5,11 @@
 
 Gem::Specification.new do |s|
   s.name = %q{metamri}
-  s.version = "0.1.19"
+  s.version = "0.1.20"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.authors = ["Kristopher J. Kosmatka"]
-  s.date = %q{2010-07-09}
+  s.date = %q{2010-07-15}
   s.description = %q{Extraction of MRI metadata and insertion into compatible sqlite3 databases.}
   s.email = %q{kk4@medicine.wisc.edu}
   s.executables = ["import_study.rb", "import_visit.rb", "import_respiratory_files.rb", "list_visit", "convert_visit.rb"]

metadata

@@ -1,13 +1,13 @@
 --- !ruby/object:Gem::Specification 
 name: metamri
 version: !ruby/object:Gem::Version 
-  hash: 61
+  hash: 51
   prerelease: false
   segments: 
   - 0
   - 1
-  - 19
-  version: 0.1.19
+  - 20
+  version: 0.1.20
 platform: ruby
 authors: 
 - Kristopher J. Kosmatka
@@ -15,7 +15,7 @@ autorequire:
 bindir: bin
 cert_chain: []
 
-date: 2010-07-09 00:00:00 -05:00
+date: 2010-07-15 00:00:00 -05:00
 default_executable: 
 dependencies: 
 - !ruby/object:Gem::Dependency