metamri 0.1.19 → 0.1.20
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- data/VERSION +1 -1
- data/lib/metamri/core_additions.rb +6 -12
- data/metamri.gemspec +2 -2
- metadata +4 -4
data/VERSION
CHANGED
@@ -1 +1 @@
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1
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-
0.1.
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1
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+
0.1.20
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@@ -1,13 +1,11 @@
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1
1
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require 'tmpdir'
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2
2
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class String
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3
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-
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4
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-
=begin rdoc
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5
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-
Does same basic string replacements to ensure valid filenames.
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6
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-
=end
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3
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+
# Does same basic string replacements to ensure valid filenames.
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7
4
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def escape_filename
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8
5
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mgsub([[/[\s\:\)\(\/\?\,]+/, "-"], [/\*/, "star"], [/\./,""]])
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9
6
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end
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10
7
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8
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+
# gsub multiple pairs of regexp's
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11
9
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def mgsub(key_value_pairs=[].freeze)
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12
10
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regexp_fragments = key_value_pairs.collect { |k,v| k }
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13
11
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gsub(Regexp.union(*regexp_fragments)) do |match|
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@@ -18,7 +16,7 @@ Does same basic string replacements to ensure valid filenames.
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18
16
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end
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19
17
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20
18
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class Pathname
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21
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-
MIN_PFILE_SIZE = 10_000_000
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19
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+
MIN_PFILE_SIZE = 10_000_000 unless MIN_PFILE_SIZE
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22
20
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23
21
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def each_subdirectory
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24
22
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each_entry do |leaf|
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@@ -49,10 +47,6 @@ class Pathname
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49
47
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end
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50
48
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end
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51
49
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52
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-
# def first_pfile(&block)
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53
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-
# Pathname.new(filename).local_copy { block }
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54
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-
# end
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55
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-
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56
50
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def first_dicom
|
57
51
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entries.each do |leaf|
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58
52
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branch = self + leaf
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@@ -96,10 +90,11 @@ class Pathname
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96
90
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tempdir = Dir.mktmpdir('local_orig')
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97
91
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|
98
92
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entries.each do |leaf|
|
99
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-
branch = self + leaf
|
93
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+
puts branch = self + leaf
|
100
94
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next if branch.directory?
|
101
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-
|
95
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+
ignore_patterns.collect { |pat| next if leaf.to_s =~ pattern }
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102
96
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next if branch.should_be_skipped
|
97
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+
puts "Locally provisioning #{leaf}"
|
103
98
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lc = branch.local_copy(tempdir)
|
104
99
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lc.chmod(0444 | 0200 | 0020 )
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105
100
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end
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@@ -117,7 +112,6 @@ class Pathname
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117
112
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passed a block. If it is passed a block, it will create the local copy
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118
113
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and ensure the local copy is deleted.
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119
114
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=end
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120
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-
|
121
115
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def local_copy(tempdir = Dir.mktmpdir, &block)
|
122
116
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tfbase = self.to_s =~ /\.bz2$/ ? self.basename.to_s.chomp(".bz2") : self.basename.to_s
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123
117
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tfbase.escape_filename
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data/metamri.gemspec
CHANGED
@@ -5,11 +5,11 @@
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5
5
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6
6
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Gem::Specification.new do |s|
|
7
7
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s.name = %q{metamri}
|
8
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-
s.version = "0.1.
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8
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+
s.version = "0.1.20"
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9
9
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|
10
10
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s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
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11
11
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s.authors = ["Kristopher J. Kosmatka"]
|
12
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-
s.date = %q{2010-07-
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12
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+
s.date = %q{2010-07-15}
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13
13
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s.description = %q{Extraction of MRI metadata and insertion into compatible sqlite3 databases.}
|
14
14
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s.email = %q{kk4@medicine.wisc.edu}
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15
15
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s.executables = ["import_study.rb", "import_visit.rb", "import_respiratory_files.rb", "list_visit", "convert_visit.rb"]
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metadata
CHANGED
@@ -1,13 +1,13 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
2
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name: metamri
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3
3
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version: !ruby/object:Gem::Version
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4
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-
hash:
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4
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+
hash: 51
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5
5
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prerelease: false
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6
6
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segments:
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7
7
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- 0
|
8
8
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- 1
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9
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-
-
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10
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-
version: 0.1.
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9
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+
- 20
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10
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+
version: 0.1.20
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11
11
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platform: ruby
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12
12
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authors:
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13
13
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- Kristopher J. Kosmatka
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@@ -15,7 +15,7 @@ autorequire:
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|
15
15
|
bindir: bin
|
16
16
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cert_chain: []
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17
17
|
|
18
|
-
date: 2010-07-
|
18
|
+
date: 2010-07-15 00:00:00 -05:00
|
19
19
|
default_executable:
|
20
20
|
dependencies:
|
21
21
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- !ruby/object:Gem::Dependency
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