metamri 0.2.7 → 0.2.8
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- data/Gemfile.lock +15 -6
- data/Rakefile +4 -3
- data/VERSION +1 -1
- data/lib/metamri.rb +3 -2
- data/metamri.gemspec +44 -8
- metadata +200 -21
data/Gemfile.lock
CHANGED
@@ -1,10 +1,12 @@
|
|
1
1
|
PATH
|
2
2
|
remote: .
|
3
3
|
specs:
|
4
|
-
metamri (0.2.
|
4
|
+
metamri (0.2.7)
|
5
5
|
activeresource (~> 3.0)
|
6
|
-
dicom (~> 0.8)
|
6
|
+
dicom (~> 0.8.0)
|
7
|
+
hirb (~> 0.4)
|
7
8
|
metamri
|
9
|
+
rmagick (~> 2.13.1)
|
8
10
|
sqlite3 (~> 1.3.3)
|
9
11
|
|
10
12
|
GEM
|
@@ -19,10 +21,16 @@ GEM
|
|
19
21
|
activesupport (= 3.0.9)
|
20
22
|
activesupport (3.0.9)
|
21
23
|
builder (2.1.2)
|
22
|
-
|
24
|
+
bzip2-ruby (0.2.7)
|
25
|
+
dicom (0.8)
|
23
26
|
diff-lcs (1.1.2)
|
27
|
+
escoffier (0.1.3)
|
28
|
+
bzip2-ruby
|
29
|
+
snmp
|
30
|
+
term-ansicolor
|
24
31
|
hirb (0.4.5)
|
25
32
|
i18n (0.5.0)
|
33
|
+
rmagick (2.13.1)
|
26
34
|
rspec (2.6.0)
|
27
35
|
rspec-core (~> 2.6.0)
|
28
36
|
rspec-expectations (~> 2.6.0)
|
@@ -31,13 +39,14 @@ GEM
|
|
31
39
|
rspec-expectations (2.6.0)
|
32
40
|
diff-lcs (~> 1.1.2)
|
33
41
|
rspec-mocks (2.6.0)
|
34
|
-
|
42
|
+
snmp (1.0.3)
|
43
|
+
sqlite3 (1.3.4)
|
44
|
+
term-ansicolor (1.0.5)
|
35
45
|
|
36
46
|
PLATFORMS
|
37
47
|
ruby
|
38
48
|
|
39
49
|
DEPENDENCIES
|
40
|
-
|
41
|
-
hirb (~> 0.4)
|
50
|
+
escoffier
|
42
51
|
metamri!
|
43
52
|
rspec (~> 2.5)
|
data/Rakefile
CHANGED
@@ -13,11 +13,12 @@ begin
|
|
13
13
|
gemspec.homepage = "http://github.com/brainmap/metamri"
|
14
14
|
gemspec.authors = ["Kristopher J. Kosmatka", "Erik Kastman"]
|
15
15
|
gemspec.add_dependency('sqlite3', '~>1.3.3')
|
16
|
-
gemspec.add_dependency('dicom', '~>0.8')
|
16
|
+
gemspec.add_dependency('dicom', '~>0.8.0')
|
17
17
|
gemspec.add_dependency('activeresource', '~>3.0')
|
18
|
-
gemspec.
|
18
|
+
gemspec.add_dependency('rmagick', '~>2.13.1')
|
19
19
|
gemspec.add_dependency('hirb', '~>0.4')
|
20
|
-
|
20
|
+
gemspec.add_development_dependency('rspec', '~>2.5')
|
21
|
+
gemspec.add_development_dependency('escoffier')
|
21
22
|
end
|
22
23
|
Jeweler::GemcutterTasks.new
|
23
24
|
rescue LoadError
|
data/VERSION
CHANGED
@@ -1 +1 @@
|
|
1
|
-
0.2.
|
1
|
+
0.2.8
|
data/lib/metamri.rb
CHANGED
@@ -7,7 +7,8 @@ begin
|
|
7
7
|
require 'active_resource'
|
8
8
|
require 'hirb'
|
9
9
|
require 'rspec'
|
10
|
-
require 'dicom'
|
10
|
+
require 'dicom'
|
11
|
+
require 'rmagick'
|
11
12
|
rescue LoadError
|
12
13
|
end
|
13
14
|
|
@@ -20,9 +21,9 @@ require 'metamri/raw_image_dataset_resource'
|
|
20
21
|
require 'metamri/visit_raw_data_directory_resource'
|
21
22
|
require 'metamri/image_dataset_quality_check_resource'
|
22
23
|
require 'metamri/dicom_additions'
|
24
|
+
require 'metamri/raw_image_dataset_thumbnail'
|
23
25
|
require 'fileutils'
|
24
26
|
|
25
|
-
# require 'metamri/raw_image_dataset_thumbnail'
|
26
27
|
# TODO Move raw_image_dataset_thumbnail out of metamri.
|
27
28
|
|
28
29
|
begin
|
data/metamri.gemspec
CHANGED
@@ -5,11 +5,11 @@
|
|
5
5
|
|
6
6
|
Gem::Specification.new do |s|
|
7
7
|
s.name = %q{metamri}
|
8
|
-
s.version = "0.2.
|
8
|
+
s.version = "0.2.8"
|
9
9
|
|
10
10
|
s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
|
11
11
|
s.authors = ["Kristopher J. Kosmatka", "Erik Kastman"]
|
12
|
-
s.date = %q{2011-07-
|
12
|
+
s.date = %q{2011-07-28}
|
13
13
|
s.description = %q{Extraction of MRI metadata and insertion into compatible sqlite3 databases.}
|
14
14
|
s.email = %q{kk4@medicine.wisc.edu}
|
15
15
|
s.executables = ["convert_visit.rb", "import_visit.rb", "import_respiratory_files.rb", "import_study.rb", "list_visit"]
|
@@ -87,22 +87,46 @@ Gem::Specification.new do |s|
|
|
87
87
|
s.add_development_dependency(%q<rspec>, ["~> 2.5"])
|
88
88
|
s.add_development_dependency(%q<rspec>, ["~> 2.5"])
|
89
89
|
s.add_development_dependency(%q<rspec>, ["~> 2.5"])
|
90
|
+
s.add_development_dependency(%q<rspec>, ["~> 2.5"])
|
91
|
+
s.add_development_dependency(%q<rspec>, ["~> 2.5"])
|
92
|
+
s.add_development_dependency(%q<rspec>, ["~> 2.5"])
|
93
|
+
s.add_development_dependency(%q<rspec>, ["~> 2.5"])
|
94
|
+
s.add_development_dependency(%q<rspec>, ["~> 2.5"])
|
95
|
+
s.add_development_dependency(%q<rspec>, ["~> 2.5"])
|
96
|
+
s.add_development_dependency(%q<rspec>, ["~> 2.5"])
|
97
|
+
s.add_development_dependency(%q<escoffier>, [">= 0"])
|
98
|
+
s.add_development_dependency(%q<rspec>, ["~> 2.5"])
|
99
|
+
s.add_development_dependency(%q<escoffier>, [">= 0"])
|
90
100
|
s.add_runtime_dependency(%q<sqlite3>, ["~> 1.3.3"])
|
91
|
-
s.add_runtime_dependency(%q<dicom>, ["~> 0.8"])
|
101
|
+
s.add_runtime_dependency(%q<dicom>, ["~> 0.8.0"])
|
92
102
|
s.add_runtime_dependency(%q<activeresource>, ["~> 3.0"])
|
93
|
-
s.
|
103
|
+
s.add_runtime_dependency(%q<rmagick>, ["~> 2.13.1"])
|
94
104
|
s.add_runtime_dependency(%q<hirb>, ["~> 0.4"])
|
105
|
+
s.add_development_dependency(%q<rspec>, ["~> 2.5"])
|
106
|
+
s.add_development_dependency(%q<escoffier>, [">= 0"])
|
95
107
|
else
|
96
108
|
s.add_dependency(%q<metamri>, [">= 0"])
|
97
109
|
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
98
110
|
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
99
111
|
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
100
112
|
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
113
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
114
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
115
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
116
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
117
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
118
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
119
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
120
|
+
s.add_dependency(%q<escoffier>, [">= 0"])
|
121
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
122
|
+
s.add_dependency(%q<escoffier>, [">= 0"])
|
101
123
|
s.add_dependency(%q<sqlite3>, ["~> 1.3.3"])
|
102
|
-
s.add_dependency(%q<dicom>, ["~> 0.8"])
|
124
|
+
s.add_dependency(%q<dicom>, ["~> 0.8.0"])
|
103
125
|
s.add_dependency(%q<activeresource>, ["~> 3.0"])
|
104
|
-
s.add_dependency(%q<
|
126
|
+
s.add_dependency(%q<rmagick>, ["~> 2.13.1"])
|
105
127
|
s.add_dependency(%q<hirb>, ["~> 0.4"])
|
128
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
129
|
+
s.add_dependency(%q<escoffier>, [">= 0"])
|
106
130
|
end
|
107
131
|
else
|
108
132
|
s.add_dependency(%q<metamri>, [">= 0"])
|
@@ -110,11 +134,23 @@ Gem::Specification.new do |s|
|
|
110
134
|
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
111
135
|
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
112
136
|
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
137
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
138
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
139
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
140
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
141
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
142
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
143
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
144
|
+
s.add_dependency(%q<escoffier>, [">= 0"])
|
145
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
146
|
+
s.add_dependency(%q<escoffier>, [">= 0"])
|
113
147
|
s.add_dependency(%q<sqlite3>, ["~> 1.3.3"])
|
114
|
-
s.add_dependency(%q<dicom>, ["~> 0.8"])
|
148
|
+
s.add_dependency(%q<dicom>, ["~> 0.8.0"])
|
115
149
|
s.add_dependency(%q<activeresource>, ["~> 3.0"])
|
116
|
-
s.add_dependency(%q<
|
150
|
+
s.add_dependency(%q<rmagick>, ["~> 2.13.1"])
|
117
151
|
s.add_dependency(%q<hirb>, ["~> 0.4"])
|
152
|
+
s.add_dependency(%q<rspec>, ["~> 2.5"])
|
153
|
+
s.add_dependency(%q<escoffier>, [">= 0"])
|
118
154
|
end
|
119
155
|
end
|
120
156
|
|
metadata
CHANGED
@@ -1,13 +1,13 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: metamri
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
hash:
|
4
|
+
hash: 7
|
5
5
|
prerelease:
|
6
6
|
segments:
|
7
7
|
- 0
|
8
8
|
- 2
|
9
|
-
-
|
10
|
-
version: 0.2.
|
9
|
+
- 8
|
10
|
+
version: 0.2.8
|
11
11
|
platform: ruby
|
12
12
|
authors:
|
13
13
|
- Kristopher J. Kosmatka
|
@@ -16,7 +16,7 @@ autorequire:
|
|
16
16
|
bindir: bin
|
17
17
|
cert_chain: []
|
18
18
|
|
19
|
-
date: 2011-07-
|
19
|
+
date: 2011-07-28 00:00:00 -05:00
|
20
20
|
default_executable:
|
21
21
|
dependencies:
|
22
22
|
- !ruby/object:Gem::Dependency
|
@@ -93,11 +93,159 @@ dependencies:
|
|
93
93
|
- 5
|
94
94
|
version: "2.5"
|
95
95
|
requirement: *id005
|
96
|
+
- !ruby/object:Gem::Dependency
|
97
|
+
prerelease: false
|
98
|
+
name: rspec
|
99
|
+
type: :development
|
100
|
+
version_requirements: &id006 !ruby/object:Gem::Requirement
|
101
|
+
none: false
|
102
|
+
requirements:
|
103
|
+
- - ~>
|
104
|
+
- !ruby/object:Gem::Version
|
105
|
+
hash: 9
|
106
|
+
segments:
|
107
|
+
- 2
|
108
|
+
- 5
|
109
|
+
version: "2.5"
|
110
|
+
requirement: *id006
|
111
|
+
- !ruby/object:Gem::Dependency
|
112
|
+
prerelease: false
|
113
|
+
name: rspec
|
114
|
+
type: :development
|
115
|
+
version_requirements: &id007 !ruby/object:Gem::Requirement
|
116
|
+
none: false
|
117
|
+
requirements:
|
118
|
+
- - ~>
|
119
|
+
- !ruby/object:Gem::Version
|
120
|
+
hash: 9
|
121
|
+
segments:
|
122
|
+
- 2
|
123
|
+
- 5
|
124
|
+
version: "2.5"
|
125
|
+
requirement: *id007
|
126
|
+
- !ruby/object:Gem::Dependency
|
127
|
+
prerelease: false
|
128
|
+
name: rspec
|
129
|
+
type: :development
|
130
|
+
version_requirements: &id008 !ruby/object:Gem::Requirement
|
131
|
+
none: false
|
132
|
+
requirements:
|
133
|
+
- - ~>
|
134
|
+
- !ruby/object:Gem::Version
|
135
|
+
hash: 9
|
136
|
+
segments:
|
137
|
+
- 2
|
138
|
+
- 5
|
139
|
+
version: "2.5"
|
140
|
+
requirement: *id008
|
141
|
+
- !ruby/object:Gem::Dependency
|
142
|
+
prerelease: false
|
143
|
+
name: rspec
|
144
|
+
type: :development
|
145
|
+
version_requirements: &id009 !ruby/object:Gem::Requirement
|
146
|
+
none: false
|
147
|
+
requirements:
|
148
|
+
- - ~>
|
149
|
+
- !ruby/object:Gem::Version
|
150
|
+
hash: 9
|
151
|
+
segments:
|
152
|
+
- 2
|
153
|
+
- 5
|
154
|
+
version: "2.5"
|
155
|
+
requirement: *id009
|
156
|
+
- !ruby/object:Gem::Dependency
|
157
|
+
prerelease: false
|
158
|
+
name: rspec
|
159
|
+
type: :development
|
160
|
+
version_requirements: &id010 !ruby/object:Gem::Requirement
|
161
|
+
none: false
|
162
|
+
requirements:
|
163
|
+
- - ~>
|
164
|
+
- !ruby/object:Gem::Version
|
165
|
+
hash: 9
|
166
|
+
segments:
|
167
|
+
- 2
|
168
|
+
- 5
|
169
|
+
version: "2.5"
|
170
|
+
requirement: *id010
|
171
|
+
- !ruby/object:Gem::Dependency
|
172
|
+
prerelease: false
|
173
|
+
name: rspec
|
174
|
+
type: :development
|
175
|
+
version_requirements: &id011 !ruby/object:Gem::Requirement
|
176
|
+
none: false
|
177
|
+
requirements:
|
178
|
+
- - ~>
|
179
|
+
- !ruby/object:Gem::Version
|
180
|
+
hash: 9
|
181
|
+
segments:
|
182
|
+
- 2
|
183
|
+
- 5
|
184
|
+
version: "2.5"
|
185
|
+
requirement: *id011
|
186
|
+
- !ruby/object:Gem::Dependency
|
187
|
+
prerelease: false
|
188
|
+
name: rspec
|
189
|
+
type: :development
|
190
|
+
version_requirements: &id012 !ruby/object:Gem::Requirement
|
191
|
+
none: false
|
192
|
+
requirements:
|
193
|
+
- - ~>
|
194
|
+
- !ruby/object:Gem::Version
|
195
|
+
hash: 9
|
196
|
+
segments:
|
197
|
+
- 2
|
198
|
+
- 5
|
199
|
+
version: "2.5"
|
200
|
+
requirement: *id012
|
201
|
+
- !ruby/object:Gem::Dependency
|
202
|
+
prerelease: false
|
203
|
+
name: escoffier
|
204
|
+
type: :development
|
205
|
+
version_requirements: &id013 !ruby/object:Gem::Requirement
|
206
|
+
none: false
|
207
|
+
requirements:
|
208
|
+
- - ">="
|
209
|
+
- !ruby/object:Gem::Version
|
210
|
+
hash: 3
|
211
|
+
segments:
|
212
|
+
- 0
|
213
|
+
version: "0"
|
214
|
+
requirement: *id013
|
215
|
+
- !ruby/object:Gem::Dependency
|
216
|
+
prerelease: false
|
217
|
+
name: rspec
|
218
|
+
type: :development
|
219
|
+
version_requirements: &id014 !ruby/object:Gem::Requirement
|
220
|
+
none: false
|
221
|
+
requirements:
|
222
|
+
- - ~>
|
223
|
+
- !ruby/object:Gem::Version
|
224
|
+
hash: 9
|
225
|
+
segments:
|
226
|
+
- 2
|
227
|
+
- 5
|
228
|
+
version: "2.5"
|
229
|
+
requirement: *id014
|
230
|
+
- !ruby/object:Gem::Dependency
|
231
|
+
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name: escoffier
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type: :development
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version_requirements: &id015 !ruby/object:Gem::Requirement
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none: false
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name: sqlite3
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type: :runtime
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- - ~>
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@@ -108,27 +256,28 @@ dependencies:
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version: 1.3.3
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requirement: *
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requirement: *id016
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prerelease: false
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name: dicom
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type: :runtime
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hash:
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hash: 63
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version: 0.8.0
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requirement: *id017
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prerelease: false
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name: activeresource
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type: :runtime
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version_requirements: &
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version_requirements: &id018 !ruby/object:Gem::Requirement
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none: false
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- - ~>
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@@ -138,27 +287,28 @@ dependencies:
|
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|
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version: "3.0"
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requirement: *
|
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requirement: *id018
|
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|
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|
prerelease: false
|
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-
name:
|
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|
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type: :
|
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|
-
version_requirements: &
|
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|
+
name: rmagick
|
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type: :runtime
|
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|
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version_requirements: &id019 !ruby/object:Gem::Requirement
|
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|
none: false
|
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|
requirements:
|
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|
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|
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|
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|
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|
-
hash:
|
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|
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hash: 57
|
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|
segments:
|
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|
- 2
|
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|
-
-
|
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|
-
|
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|
-
|
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|
+
- 13
|
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|
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- 1
|
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|
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version: 2.13.1
|
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|
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requirement: *id019
|
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|
- !ruby/object:Gem::Dependency
|
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|
prerelease: false
|
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|
name: hirb
|
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|
type: :runtime
|
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|
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version_requirements: &
|
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|
+
version_requirements: &id020 !ruby/object:Gem::Requirement
|
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|
none: false
|
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|
requirements:
|
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|
- - ~>
|
@@ -168,7 +318,36 @@ dependencies:
|
|
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|
- 0
|
169
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|
- 4
|
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|
version: "0.4"
|
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requirement: *
|
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|
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requirement: *id020
|
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|
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- !ruby/object:Gem::Dependency
|
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|
+
prerelease: false
|
324
|
+
name: rspec
|
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|
+
type: :development
|
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|
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version_requirements: &id021 !ruby/object:Gem::Requirement
|
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|
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none: false
|
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|
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requirements:
|
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|
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- - ~>
|
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|
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|
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|
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hash: 9
|
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|
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segments:
|
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|
+
- 2
|
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|
+
- 5
|
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|
+
version: "2.5"
|
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|
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requirement: *id021
|
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|
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- !ruby/object:Gem::Dependency
|
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|
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prerelease: false
|
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|
+
name: escoffier
|
340
|
+
type: :development
|
341
|
+
version_requirements: &id022 !ruby/object:Gem::Requirement
|
342
|
+
none: false
|
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|
+
requirements:
|
344
|
+
- - ">="
|
345
|
+
- !ruby/object:Gem::Version
|
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|
+
hash: 3
|
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|
+
segments:
|
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|
+
- 0
|
349
|
+
version: "0"
|
350
|
+
requirement: *id022
|
172
351
|
description: Extraction of MRI metadata and insertion into compatible sqlite3 databases.
|
173
352
|
email: kk4@medicine.wisc.edu
|
174
353
|
executables:
|