metamri 0.2.12 → 0.2.13
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- data/bin/convert_visit.rb +1 -1
- data/lib/metamri/version.rb +1 -1
- data/metamri.gemspec +1 -1
- metadata +12 -28
data/bin/convert_visit.rb
CHANGED
@@ -42,7 +42,7 @@ def convert_visit(raw_directory, scan_procedure_codename, output_directory = nil
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|
42
42
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output_directory = output_directory ||= v.default_preprocess_directory
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43
43
|
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44
44
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begin
|
45
|
-
default_options = {:ignore_patterns => [/vipr/,/900$/,/901$/,/999$/]} # seems to like number , not like string
|
45
|
+
default_options = {:ignore_patterns => [/vipr/,/900$/,/901$/,/999$/]} # seems to like number , not like string ??? /raw/,
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46
46
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#options = default_options.merge(options)
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47
47
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v.scan(default_options)
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48
48
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v.to_nifti!(output_directory)
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data/lib/metamri/version.rb
CHANGED
data/metamri.gemspec
CHANGED
@@ -19,7 +19,7 @@ Gem::Specification.new do |s|
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|
19
19
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|
20
20
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s.add_runtime_dependency('dicom', "~> 0.8.0")
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21
21
|
s.add_runtime_dependency('activeresource', "~> 3.0")
|
22
|
-
s.add_runtime_dependency('rmagick', "~> 2.13.1")
|
22
|
+
# s.add_runtime_dependency('rmagick', "~> 2.13.1") # rmagick is used by the panda snapshots, so should not be needed on a machine only doing convert visit
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23
23
|
s.add_runtime_dependency('hirb', "~> 0.4")
|
24
24
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s.add_runtime_dependency('sqlite3', "~>1.3.4")
|
25
25
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s.add_development_dependency('rspec', "~> 2.5")
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metadata
CHANGED
@@ -1,13 +1,13 @@
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|
1
1
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--- !ruby/object:Gem::Specification
|
2
2
|
name: metamri
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
hash:
|
4
|
+
hash: 13
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5
5
|
prerelease:
|
6
6
|
segments:
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7
7
|
- 0
|
8
8
|
- 2
|
9
|
-
-
|
10
|
-
version: 0.2.
|
9
|
+
- 13
|
10
|
+
version: 0.2.13
|
11
11
|
platform: ruby
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12
12
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authors:
|
13
13
|
- Kristopher J. Kosmatka
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@@ -16,7 +16,7 @@ autorequire:
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|
16
16
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bindir: bin
|
17
17
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cert_chain: []
|
18
18
|
|
19
|
-
date:
|
19
|
+
date: 2013-02-18 00:00:00 Z
|
20
20
|
dependencies:
|
21
21
|
- !ruby/object:Gem::Dependency
|
22
22
|
name: dicom
|
@@ -49,26 +49,10 @@ dependencies:
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|
49
49
|
version: "3.0"
|
50
50
|
type: :runtime
|
51
51
|
version_requirements: *id002
|
52
|
-
- !ruby/object:Gem::Dependency
|
53
|
-
name: rmagick
|
54
|
-
prerelease: false
|
55
|
-
requirement: &id003 !ruby/object:Gem::Requirement
|
56
|
-
none: false
|
57
|
-
requirements:
|
58
|
-
- - ~>
|
59
|
-
- !ruby/object:Gem::Version
|
60
|
-
hash: 57
|
61
|
-
segments:
|
62
|
-
- 2
|
63
|
-
- 13
|
64
|
-
- 1
|
65
|
-
version: 2.13.1
|
66
|
-
type: :runtime
|
67
|
-
version_requirements: *id003
|
68
52
|
- !ruby/object:Gem::Dependency
|
69
53
|
name: hirb
|
70
54
|
prerelease: false
|
71
|
-
requirement: &
|
55
|
+
requirement: &id003 !ruby/object:Gem::Requirement
|
72
56
|
none: false
|
73
57
|
requirements:
|
74
58
|
- - ~>
|
@@ -79,11 +63,11 @@ dependencies:
|
|
79
63
|
- 4
|
80
64
|
version: "0.4"
|
81
65
|
type: :runtime
|
82
|
-
version_requirements: *
|
66
|
+
version_requirements: *id003
|
83
67
|
- !ruby/object:Gem::Dependency
|
84
68
|
name: sqlite3
|
85
69
|
prerelease: false
|
86
|
-
requirement: &
|
70
|
+
requirement: &id004 !ruby/object:Gem::Requirement
|
87
71
|
none: false
|
88
72
|
requirements:
|
89
73
|
- - ~>
|
@@ -95,11 +79,11 @@ dependencies:
|
|
95
79
|
- 4
|
96
80
|
version: 1.3.4
|
97
81
|
type: :runtime
|
98
|
-
version_requirements: *
|
82
|
+
version_requirements: *id004
|
99
83
|
- !ruby/object:Gem::Dependency
|
100
84
|
name: rspec
|
101
85
|
prerelease: false
|
102
|
-
requirement: &
|
86
|
+
requirement: &id005 !ruby/object:Gem::Requirement
|
103
87
|
none: false
|
104
88
|
requirements:
|
105
89
|
- - ~>
|
@@ -110,11 +94,11 @@ dependencies:
|
|
110
94
|
- 5
|
111
95
|
version: "2.5"
|
112
96
|
type: :development
|
113
|
-
version_requirements: *
|
97
|
+
version_requirements: *id005
|
114
98
|
- !ruby/object:Gem::Dependency
|
115
99
|
name: escoffier
|
116
100
|
prerelease: false
|
117
|
-
requirement: &
|
101
|
+
requirement: &id006 !ruby/object:Gem::Requirement
|
118
102
|
none: false
|
119
103
|
requirements:
|
120
104
|
- - ">="
|
@@ -124,7 +108,7 @@ dependencies:
|
|
124
108
|
- 0
|
125
109
|
version: "0"
|
126
110
|
type: :development
|
127
|
-
version_requirements: *
|
111
|
+
version_requirements: *id006
|
128
112
|
description: Extraction of MRI metadata.
|
129
113
|
email: ekk@medicine.wisc.edu
|
130
114
|
executables:
|