mesh-medical-subject-headings 1.2.0

data/test/test_helper.rb

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+gem "minitest"
+require "minitest/autorun"
+require "minitest/pride"
+require "minitest/mock"
+require "mocha/setup"
+
+lib = File.expand_path('../../lib', __FILE__)
+$LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
+
+require "MESH"
+
+start = Time.now
+MESH::Mesh.configure(filename: File.expand_path('../../data/mesh_data_2014/d2014.bin.gz', __FILE__))
+finish = Time.now
+configuration_time = finish - start
+raise 'MESH::Mesh should configure in less than 10 seconds.' unless configuration_time < 10

data/test/translator_test.rb

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+require_relative 'test_helper'
+require 'MESH/translator'
+
+module MESH
+  describe 'Testing MESH:Translator core functions' do
+
+    it 'should translate a single word' do
+      tr = MESH::Translator.new
+      assert_equal 'oesophagus', tr.translate('esophagus')
+      assert_equal 'aluminium', tr.translate('aluminum')
+      assert_equal 'gynaecology', tr.translate('gynecology')
+    end
+
+    it 'should translate within a body of text' do
+      tr = MESH::Translator.new
+      input = 'a condition with damage to the lining of the lower esophagus resulting from chronic acid reflux (esophagitis, reflux). through the process of metaplasia, the squamous cells are replaced by a columnar epithelium with cells resembling those of the intestine or the salmon-pink mucosa of the stomach. barrett\'s columnar epithelium is a marker for severe reflux and precursor to adenocarcinoma of the esophagus.'
+      expected = 'a condition with damage to the lining of the lower oesophagus resulting from chronic acid reflux (oesophagitis, reflux). through the process of metaplasia, the squamous cells are replaced by a columnar epithelium with cells resembling those of the intestine or the salmon-pink mucosa of the stomach. barrett\'s columnar epithelium is a marker for severe reflux and precursor to adenocarcinoma of the oesophagus.'
+
+      assert_equal expected, tr.translate(input)
+    end
+
+    it 'should match uppercase' do
+      tr = MESH::Translator.new
+      input = 'A condition with damage to the lining of the lower ESOPHAGUS resulting from chronic acid reflux (ESOPHAGITIS, REFLUX). Through the process of metaplasia, the squamous cells are replaced by a columnar epithelium with cells resembling those of the INTESTINE or the salmon-pink mucosa of the STOMACH. Barrett\'s columnar epithelium is a marker for severe reflux and precursor to ADENOCARCINOMA of the esophagus.'
+      expected = 'A condition with damage to the lining of the lower OESOPHAGUS resulting from chronic acid reflux (OESOPHAGITIS, REFLUX). Through the process of metaplasia, the squamous cells are replaced by a columnar epithelium with cells resembling those of the INTESTINE or the salmon-pink mucosa of the STOMACH. Barrett\'s columnar epithelium is a marker for severe reflux and precursor to ADENOCARCINOMA of the oesophagus.'
+      assert_equal expected, tr.translate(input)
+    end
+
+    it 'should match title case' do
+      tr = MESH::Translator.new
+      input = 'A condition with damage to the lining of the lower Esophagus resulting from chronic acid reflux (Esophagitis, REFLUX). Through the process of metaplasia, the squamous cells are replaced by a columnar epithelium with cells resembling those of the INTESTINE or the salmon-pink mucosa of the STOMACH. Barrett\'s columnar epithelium is a marker for severe reflux and precursor to ADENOCARCINOMA of the esophagus.'
+      expected = 'A condition with damage to the lining of the lower Oesophagus resulting from chronic acid reflux (Oesophagitis, REFLUX). Through the process of metaplasia, the squamous cells are replaced by a columnar epithelium with cells resembling those of the INTESTINE or the salmon-pink mucosa of the STOMACH. Barrett\'s columnar epithelium is a marker for severe reflux and precursor to ADENOCARCINOMA of the oesophagus.'
+      assert_equal expected, tr.translate(input)
+    end
+
+    it 'should not change the input string' do
+      tr = MESH::Translator.new
+      input = 'esophagus'
+      assert_equal 'oesophagus', tr.translate(input)
+      assert_equal 'esophagus', input
+    end
+
+    it 'should maintain punctuation' do
+      tr = MESH::Translator.new
+      input = 'Esophagus, Barrett'
+      assert_equal 'Oesophagus, Barrett', tr.translate(input)
+    end
+
+  end
+end
+
+

metadata

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+--- !ruby/object:Gem::Specification
+name: mesh-medical-subject-headings
+version: !ruby/object:Gem::Version
+  version: 1.2.0
+platform: ruby
+authors:
+- mmmmmrob
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2014-02-28 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: bundler
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '1.3'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: '1.3'
+- !ruby/object:Gem::Dependency
+  name: rake
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: mocha
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: yard
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - '>='
+      - !ruby/object:Gem::Version
+        version: '0'
+- !ruby/object:Gem::Dependency
+  name: minitest
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: 5.0.8
+  type: :development
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ~>
+      - !ruby/object:Gem::Version
+        version: 5.0.8
+description: A ruby gem containing MeSH subject headings (https://www.nlm.nih.gov/mesh/)
+  for use in classifying and entity recognition.
+email:
+- rob@dynamicorange.com
+executables: []
+extensions: []
+extra_rdoc_files: []
+files:
+- .gitignore
+- CHANGELOG.md
+- CONTRIBUTING.md
+- Gemfile
+- Gemfile.lock
+- LICENCE.md
+- MESH.gemspec
+- README.md
+- Rakefile
+- data/mesh_data_2014/c2014.bin.gz
+- data/mesh_data_2014/d2014.bin.gz
+- data/mesh_data_2014/mtrees2014.bin.gz
+- data/mesh_data_2014/q2014.bin.gz
+- data/mesh_data_2014/useful_2014.tsv
+- lib/MESH.rb
+- lib/MESH/mesh.rb
+- lib/MESH/translator.rb
+- lib/MESH/version.rb
+- test/mesh_test.rb
+- test/test_helper.rb
+- test/translator_test.rb
+homepage: ''
+licenses:
+- AGPL3
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.2.0
+signing_key: 
+specification_version: 4
+summary: A ruby gem containing MeSH subject headings (https://www.nlm.nih.gov/mesh/)
+  for use in classifying and entity recognition.
+test_files:
+- test/mesh_test.rb
+- test/test_helper.rb
+- test/translator_test.rb
+has_rdoc: