medattrib 0.0.4

data/lib/taggers/strength_unit_tagger.rb

@@ -0,0 +1,37 @@
+=begin
+Copyright 2015 The MITRE Corporation
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+   http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+=end
+
+class StrengthUnitTagger < Tagger
+    def initialize
+        @numberSearch2 =
+             /(?:(?:(?:\d+\/)?\d+(?:\.\d+)?)?|one|two)
+                (?:\shundred|\sthousand)?(?:(?:-|\s+to\s+)
+                (?:\d+(?:\.\d+)?|one|two)
+                (?:\shundred|\sthousand)?)?/i
+        @numberSearch3 =
+             /(?:(?:\d+))/
+        @default_precondition = /\s(#{@@number_complete_search})\s+#{@@unit_search_global || (raise Exception.new("unit search regex not found"))}/i
+        @default_search = /(#{@@unit_search_global})/i
+        @content_group = 1
+        @name = 'strength_unit'
+    end
+    def parse_text(text, precondition, search, content_group)
+        tags = []
+        local_precondition = /#{@shared_search}/i
+        tags += super text, local_precondition, @default_search
+        return tags
+    end
+end

data/lib/taggers/substitution_tagger.rb

@@ -0,0 +1,44 @@
+=begin
+Copyright 2015 The MITRE Corporation
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+   http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+=end
+
+class SubstitutionTagger < Tagger
+    def initialize
+        @default_precondition = /(?x)(?:no\s+(substitutes?|substitutions?)|dispense\s+as\s+written|may
+                   \s+not\s+substitutes?|substitutions?\s+(?:$be\s+)?not\s+
+                   (?:permitted|permissible|allowed))/i
+        @default_search = /(?x)(no\s+(substitutes?|substitutions?)|dispense\s+as\s+written|may
+                      \s+not\s+(substitutes?|substitutions?)\s+(?:$be\s+)?not\s+
+                      (?:permitted|permissible|allowed))/i
+        @content_group = 1
+        @name = 'sub_status'
+    end
+    def parse_text(text, precondition, search, content_group)
+        tags_1a = super text, @default_precondition, @default_search
+        local_precondition = /(?x)(?:may\s+substitute|substitutions?\s+(?:$be\s+)?
+                   (?:permitted|permissible|allowed))/i
+        local_search = /(may\s+substitute|substitutions?\s+(?:$be\s+)?(?x)
+                       (?:permitted|permissible|allowed))/i
+        tags_1b = super text, local_precondition, local_search
+        local_precondition = /(brand)|(generic)/i
+        local_search = /((brand)|(generic))/i
+        tags_1c = super text, local_precondition, local_search
+        tags = tags_1a
+        tags += tags_1b
+        tags += tags_1c
+
+        return tags
+    end
+end

data/lib/taggers/timing_tagger.rb

@@ -0,0 +1,40 @@
+=begin
+Copyright 2015 The MITRE Corporation
+
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+   http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+=end
+
+class TimingTagger < Tagger
+    def initialize
+        @name = 'timing'
+        
+        durat1 = /(?x)(?:\d+|one|two|three|four|five|six|seven|eight|nine|
+                 ten|fifteen|twenty|thirty|sixty|half\s+an|one\s+half)\s+
+                 (?:min(?:utes?)?|hours?)/i
+        instruct1 = /(?x)(?:(?:(?:(?:immediately|just|right|#{durat1})\s+)?
+                    (?:after|at|before|prior\s+to)\s+
+                    (?:breakfast|dinner|food|lunch|
+                    (?:(?:first|each|every|q\.?)\s+)?
+                    meals?|milk|supper|eating|bedtime|going\s+to\s+bed|
+                    retiring))|\ba\.?c\.?\b|\bp\.?c\.?\b)/i
+                    
+        instruct2 = /(?x)(?:(?:(?:with|at|in)\s+(?:breakfast|dinner|food|
+                    lunch|(?:(?:first|each|every)\s+)?meals?|milk|supper|
+                    water|OJ|orange\s+juice)))/i
+        
+        instruct3 = /(?:on\s+)?(?:an\s+)?empty\s+stomach/i
+        
+        @default_search = @default_precondition = /(#{instruct1}|#{instruct2}|#{instruct3})/i
+        @content_group = 1
+    end
+end

metadata

@@ -0,0 +1,82 @@
+--- !ruby/object:Gem::Specification
+name: medattrib
+version: !ruby/object:Gem::Version
+  version: 0.0.4
+platform: ruby
+authors:
+- Cheryl Clark
+- David Tresner-Kirsch
+- Dan Noar
+- M. Jasper Phillips
+- Matt Coarr
+autorequire: 
+bindir: bin
+cert_chain: []
+date: 2014-12-04 00:00:00.000000000 Z
+dependencies:
+- !ruby/object:Gem::Dependency
+  name: standoff
+  requirement: !ruby/object:Gem::Requirement
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: 0.0.5
+  type: :runtime
+  prerelease: false
+  version_requirements: !ruby/object:Gem::Requirement
+    requirements:
+    - - ! '>='
+      - !ruby/object:Gem::Version
+        version: 0.0.5
+description: A text tagger that annotates prescription concepts
+email: davidtk@mitre.org
+executables:
+- medattrib
+extensions: []
+extra_rdoc_files: []
+files:
+- LICENSE
+- README.md
+- bin/medattrib
+- lib/list_tagger.rb
+- lib/list_taggers/dose_form_tagger.rb
+- lib/list_taggers/frequency_tagger.rb
+- lib/list_taggers/route_tagger.rb
+- lib/medattrib.rb
+- lib/run_medattrib.rb
+- lib/run_medattrib.rb~
+- lib/tagger.rb
+- lib/taggers/dispense_quantity_tagger.rb
+- lib/taggers/dose_amount_tagger.rb
+- lib/taggers/duration_tagger.rb
+- lib/taggers/indication_tagger.rb
+- lib/taggers/refill_tagger.rb
+- lib/taggers/strength_tagger.rb
+- lib/taggers/strength_unit_tagger.rb
+- lib/taggers/substitution_tagger.rb
+- lib/taggers/timing_tagger.rb
+homepage: 
+licenses:
+- Apache 2.0
+metadata: {}
+post_install_message: 
+rdoc_options: []
+require_paths:
+- lib
+required_ruby_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+required_rubygems_version: !ruby/object:Gem::Requirement
+  requirements:
+  - - ! '>='
+    - !ruby/object:Gem::Version
+      version: '0'
+requirements: []
+rubyforge_project: 
+rubygems_version: 2.4.3
+signing_key: 
+specification_version: 4
+summary: MedAttrib!
+test_files: []