mddb 0.0.5 → 0.0.6

data/config.yml

@@ -1,39 +1,23 @@
-# Example config
-#
-# database:
-#   host: localhost
-#   port: 12345
-#   name: 'sim1' 
-#
-#
-# If host or port are not defined, localhost and 27017
-# MongoDB's default port, will be used.
-#
-# Only the database name must be strictly defined. It is important
-# that you choose a database name that does not already exist, if 
-# you not want to mess up an older database.
-
 database:
-  host: 
+  host:  
   port:
-  name: 'mddb'
+  name: tom_test
 
 simulation:
-  file:  'quick.xyz'
-  frames: 5
-  dimensions: 24.8522, 24.8522, 24.8522
-  count: 1538 # total number of objects per frame
-  objects:
-    water: 
-      count: 512
-      start: 1
-      atom:
-        - oxygen
-        - hydrogen
-        - hydrogen
-    chain: 
-      count: 1
-      start: 1537
-      atom:
-        - phobe
-        - phobe
+    file:  'quick.xyz'
+    dimensions: 24.669, 24.669, 24.669 
+    count: 1538
+    objects: 
+       water:
+         count: 512
+         start: 1
+         atom:
+           - oxygen
+           - hydrogen
+           - hydrogen
+       blob:
+         count: 1
+         start: 1537
+         atom:
+           - phobe
+           - phobe

data/lib/mddb/config.rb

@@ -26,6 +26,9 @@ module Mddb
       database = Mddb::Config.database['name'] 
       MongoMapper.connection = Mongo::Connection.new(host)
       MongoMapper.database = database
+      user = Mddb::Config.database['user']
+      pass = Mddb::Config.database['pass']
+      MongoMapper.database.authenticate(user,pass)
     end
   end
 end

data/lib/mddb/version.rb

@@ -1,3 +1,3 @@
 module Mddb
-  VERSION = "0.0.5"
+  VERSION = "0.0.6"
 end

data/lib/mddb.rb

@@ -17,7 +17,7 @@ if File.exists? "config.yml"
 end
 
 module Mddb
-  TEMPLATES = File.expand_path('../mddb/templates', __FILE__)
+  TEMPLATES = File.expand_path('mddb/templates', __FILE__)
 
   def Mddb.run  opts = {}
     if opts[:all]

data/spec/spec_helper.rb

@@ -5,4 +5,8 @@ RSpec.configure do |config|
     ARGV.push '-v'
   end
 end
+$LOAD_PATH.unshift( File.dirname(__FILE__))
+$LOAD_PATH.unshift( File.join(File.dirname(__FILE__), "..","lib") )
 require 'mddb'
+
+puts Mddb::VERSION

metadata

@@ -1,7 +1,7 @@
 --- !ruby/object:Gem::Specification
 name: mddb
 version: !ruby/object:Gem::Version
-  version: 0.0.5
+  version: 0.0.6
   prerelease: 
 platform: ruby
 authors:
@@ -9,11 +9,11 @@ authors:
 autorequire: 
 bindir: bin
 cert_chain: []
-date: 2012-02-16 00:00:00.000000000Z
+date: 2012-02-20 00:00:00.000000000Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rspec
-  requirement: &70172418064280 !ruby/object:Gem::Requirement
+  requirement: &70093632250640 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -21,10 +21,10 @@ dependencies:
         version: '0'
   type: :development
   prerelease: false
-  version_requirements: *70172418064280
+  version_requirements: *70093632250640
 - !ruby/object:Gem::Dependency
   name: mongo_mapper
-  requirement: &70172418063800 !ruby/object:Gem::Requirement
+  requirement: &70093632250180 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -32,10 +32,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *70172418063800
+  version_requirements: *70093632250180
 - !ruby/object:Gem::Dependency
   name: hirb
-  requirement: &70172418063280 !ruby/object:Gem::Requirement
+  requirement: &70093632201360 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -43,10 +43,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *70172418063280
+  version_requirements: *70093632201360
 - !ruby/object:Gem::Dependency
   name: thor
-  requirement: &70172418062800 !ruby/object:Gem::Requirement
+  requirement: &70093632200820 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -54,10 +54,10 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *70172418062800
+  version_requirements: *70093632200820
 - !ruby/object:Gem::Dependency
   name: micro-optparse
-  requirement: &70172418062380 !ruby/object:Gem::Requirement
+  requirement: &70093632200280 !ruby/object:Gem::Requirement
     none: false
     requirements:
     - - ! '>='
@@ -65,7 +65,7 @@ dependencies:
         version: '0'
   type: :runtime
   prerelease: false
-  version_requirements: *70172418062380
+  version_requirements: *70093632200280
 description: MDDB makes analysing molecular dynamics simulations easy
 email:
 - thom.mulvaney@gmail.com