mddb 0.0.5 → 0.0.6

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Files changed (6) hide show
  1. data/config.yml +19 -35
  2. data/lib/mddb/config.rb +3 -0
  3. data/lib/mddb/version.rb +1 -1
  4. data/lib/mddb.rb +1 -1
  5. data/spec/spec_helper.rb +4 -0
  6. metadata +12 -12
data/config.yml CHANGED
@@ -1,39 +1,23 @@
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- # Example config
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- #
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- # database:
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- # host: localhost
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- # port: 12345
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- # name: 'sim1'
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- #
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- #
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- # If host or port are not defined, localhost and 27017
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- # MongoDB's default port, will be used.
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- #
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- # Only the database name must be strictly defined. It is important
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- # that you choose a database name that does not already exist, if
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- # you not want to mess up an older database.
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-
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  database:
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- host:
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+ host:
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  port:
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- name: 'mddb'
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+ name: tom_test
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  simulation:
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- file: 'quick.xyz'
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- frames: 5
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- dimensions: 24.8522, 24.8522, 24.8522
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- count: 1538 # total number of objects per frame
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- objects:
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- water:
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- count: 512
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- start: 1
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- atom:
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- - oxygen
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- - hydrogen
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- - hydrogen
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- chain:
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- count: 1
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- start: 1537
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- atom:
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- - phobe
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- - phobe
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+ file: 'quick.xyz'
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+ dimensions: 24.669, 24.669, 24.669
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+ count: 1538
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+ objects:
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+ water:
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+ count: 512
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+ start: 1
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+ atom:
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+ - oxygen
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+ - hydrogen
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+ - hydrogen
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+ blob:
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+ count: 1
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+ start: 1537
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+ atom:
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+ - phobe
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+ - phobe
data/lib/mddb/config.rb CHANGED
@@ -26,6 +26,9 @@ module Mddb
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  database = Mddb::Config.database['name']
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  MongoMapper.connection = Mongo::Connection.new(host)
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  MongoMapper.database = database
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+ user = Mddb::Config.database['user']
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+ pass = Mddb::Config.database['pass']
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+ MongoMapper.database.authenticate(user,pass)
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  end
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  end
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  end
data/lib/mddb/version.rb CHANGED
@@ -1,3 +1,3 @@
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  module Mddb
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- VERSION = "0.0.5"
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+ VERSION = "0.0.6"
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  end
data/lib/mddb.rb CHANGED
@@ -17,7 +17,7 @@ if File.exists? "config.yml"
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  end
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  module Mddb
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- TEMPLATES = File.expand_path('../mddb/templates', __FILE__)
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+ TEMPLATES = File.expand_path('mddb/templates', __FILE__)
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  def Mddb.run opts = {}
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  if opts[:all]
data/spec/spec_helper.rb CHANGED
@@ -5,4 +5,8 @@ RSpec.configure do |config|
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  ARGV.push '-v'
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  end
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  end
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+ $LOAD_PATH.unshift( File.dirname(__FILE__))
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+ $LOAD_PATH.unshift( File.join(File.dirname(__FILE__), "..","lib") )
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  require 'mddb'
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+
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+ puts Mddb::VERSION
metadata CHANGED
@@ -1,7 +1,7 @@
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  --- !ruby/object:Gem::Specification
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  name: mddb
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  version: !ruby/object:Gem::Version
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- version: 0.0.5
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+ version: 0.0.6
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  prerelease:
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  platform: ruby
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  authors:
@@ -9,11 +9,11 @@ authors:
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2012-02-16 00:00:00.000000000Z
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+ date: 2012-02-20 00:00:00.000000000Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: rspec
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- requirement: &70172418064280 !ruby/object:Gem::Requirement
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+ requirement: &70093632250640 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -21,10 +21,10 @@ dependencies:
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  version: '0'
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  type: :development
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  prerelease: false
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- version_requirements: *70172418064280
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+ version_requirements: *70093632250640
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  - !ruby/object:Gem::Dependency
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  name: mongo_mapper
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- requirement: &70172418063800 !ruby/object:Gem::Requirement
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+ requirement: &70093632250180 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -32,10 +32,10 @@ dependencies:
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *70172418063800
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+ version_requirements: *70093632250180
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  - !ruby/object:Gem::Dependency
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  name: hirb
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- requirement: &70172418063280 !ruby/object:Gem::Requirement
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+ requirement: &70093632201360 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -43,10 +43,10 @@ dependencies:
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *70172418063280
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+ version_requirements: *70093632201360
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  - !ruby/object:Gem::Dependency
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  name: thor
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- requirement: &70172418062800 !ruby/object:Gem::Requirement
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+ requirement: &70093632200820 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -54,10 +54,10 @@ dependencies:
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *70172418062800
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+ version_requirements: *70093632200820
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  - !ruby/object:Gem::Dependency
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  name: micro-optparse
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- requirement: &70172418062380 !ruby/object:Gem::Requirement
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+ requirement: &70093632200280 !ruby/object:Gem::Requirement
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  none: false
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  requirements:
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  - - ! '>='
@@ -65,7 +65,7 @@ dependencies:
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  version: '0'
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  type: :runtime
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  prerelease: false
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- version_requirements: *70172418062380
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+ version_requirements: *70093632200280
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  description: MDDB makes analysing molecular dynamics simulations easy
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  email:
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  - thom.mulvaney@gmail.com