mdarray 0.5.3-java → 0.5.4-java

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Files changed (43) hide show
  1. data/README.md +325 -70
  2. data/doc/20130625 MDArray Internals.docx +0 -0
  3. data/lib/colt/colt.rb +2 -0
  4. data/lib/colt/matrix/colt_matrix.rb +365 -0
  5. data/lib/colt/matrix/matrix2D_floating_algebra.rb +325 -0
  6. data/lib/colt/matrix/matrix_hierarchy.rb +258 -0
  7. data/lib/mdarray.rb +54 -3
  8. data/lib/mdarray/access.rb +16 -0
  9. data/lib/mdarray/counter.rb +16 -0
  10. data/lib/mdarray/creation.rb +13 -1
  11. data/lib/mdarray/lazy_mdarray.rb +6 -2
  12. data/lib/mdarray/lazy_operators.rb +8 -0
  13. data/lib/mdarray/printing.rb +18 -3
  14. data/lib/mdarray/section.rb +101 -0
  15. data/lib/netcdf/attribute.rb +154 -0
  16. data/lib/netcdf/cdm_node.rb +71 -0
  17. data/lib/netcdf/dimension.rb +146 -0
  18. data/lib/netcdf/file.rb +253 -0
  19. data/lib/netcdf/file_writer.rb +474 -0
  20. data/lib/netcdf/group.rb +205 -0
  21. data/lib/netcdf/netcdf.rb +151 -0
  22. data/lib/netcdf/variable.rb +520 -0
  23. data/test/colt/test_complete.rb +1 -2
  24. data/test/colt/test_double_matrix2d.rb +186 -0
  25. data/test/colt/test_float_matrix2d.rb +171 -0
  26. data/test/colt/test_math.rb +21 -0
  27. data/test/colt/test_matrix.rb +172 -0
  28. data/test/complete.rb +9 -1
  29. data/test/env.rb +11 -1
  30. data/test/mdarray/test_complete.rb +2 -0
  31. data/test/mdarray/test_creation.rb +19 -28
  32. data/test/mdarray/test_non_numeric.rb +97 -0
  33. data/test/mdarray/test_sections.rb +94 -0
  34. data/test/mdarray/test_views.rb +23 -1
  35. data/test/netcdf/netcdfwriter.rb +197 -0
  36. data/test/netcdf/test_complete.rb +27 -0
  37. data/test/netcdf/test_netcdf.rb +331 -0
  38. data/test/netcdf/test_redefine.rb +120 -0
  39. data/vendor/incanter.jar +0 -0
  40. data/vendor/{netcdfAll-4.3.16.jar → netcdfAll-4.3.18.jar} +0 -0
  41. data/version.rb +1 -1
  42. metadata +44 -26
  43. data/vendor/parallelcolt-0.10.0.jar +0 -0
Binary file
data/version.rb CHANGED
@@ -1,2 +1,2 @@
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  $gem_name = "mdarray"
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- $version="0.5.3"
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+ $version="0.5.4"
metadata CHANGED
@@ -2,26 +2,26 @@
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  name: mdarray
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  version: !ruby/object:Gem::Version
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  prerelease:
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- version: 0.5.3
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+ version: 0.5.4
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  platform: java
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  authors:
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  - Rodrigo Botafogo
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  autorequire:
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  bindir: bin
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  cert_chain: []
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- date: 2013-06-24 00:00:00.000000000 Z
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+ date: 2013-08-07 00:00:00.000000000 Z
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  dependencies:
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  - !ruby/object:Gem::Dependency
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  name: map
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: 6.3.0
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  none: false
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: 6.3.0
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  none: false
@@ -31,17 +31,15 @@ dependencies:
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  name: shoulda
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - '>='
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  - !ruby/object:Gem::Version
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- version: !binary |-
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- MA==
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+ version: '0'
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  none: false
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - '>='
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  - !ruby/object:Gem::Version
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- version: !binary |-
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- MA==
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+ version: '0'
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  none: false
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  prerelease: false
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  type: :runtime
@@ -49,13 +47,13 @@ dependencies:
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  name: simplecov
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: 0.7.1
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  none: false
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: 0.7.1
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  none: false
@@ -65,13 +63,13 @@ dependencies:
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  name: yard
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: 0.8.5.2
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  none: false
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: 0.8.5.2
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  none: false
@@ -81,13 +79,13 @@ dependencies:
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  name: kramdown
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  version_requirements: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: 1.0.1
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  none: false
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  requirement: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - '>='
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  - !ruby/object:Gem::Version
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  version: 1.0.1
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  none: false
@@ -104,7 +102,8 @@ description: "\"MDArray is a multi dimensional array implemented for JRuby inspi
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  \ \nColt provides a set of Open Source Libraries for High Performance Scientific\
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  \ and Technical \nComputing in Java. Scientific and technical computing is characterized\
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  \ by demanding problem \nsizes and a need for high performance at reasonably small\
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- \ memory footprint.\"\n"
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+ \ memory footprint.\"\n\nFor more information and (some) documentation please go\
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+ \ to: https://github.com/rbotafogo/mdarray/wiki\n"
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  email: rodrigo.a.botafogo@gmail.com
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  executables: []
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  extensions: []
@@ -123,6 +122,9 @@ files:
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  - lib/colt/double_descriptive.rb
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  - lib/colt/probability.rb
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  - lib/colt/stat_list.rb
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+ - lib/colt/matrix/colt_matrix.rb
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+ - lib/colt/matrix/matrix2D_floating_algebra.rb
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+ - lib/colt/matrix/matrix_hierarchy.rb
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  - lib/mdarray/access.rb
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  - lib/mdarray/counter.rb
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  - lib/mdarray/creation.rb
@@ -143,11 +145,23 @@ files:
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  - lib/mdarray/ruby_numeric_functions.rb
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  - lib/mdarray/ruby_operators.rb
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  - lib/mdarray/ruby_stats.rb
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+ - lib/mdarray/section.rb
146
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  - lib/mdarray/views.rb
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+ - lib/netcdf/attribute.rb
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+ - lib/netcdf/cdm_node.rb
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+ - lib/netcdf/dimension.rb
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+ - lib/netcdf/file.rb
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+ - lib/netcdf/file_writer.rb
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+ - lib/netcdf/group.rb
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+ - lib/netcdf/netcdf.rb
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+ - lib/netcdf/variable.rb
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  - test/complete.rb
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  - test/env.rb
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  - test/colt/test_complete.rb
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+ - test/colt/test_double_matrix2d.rb
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+ - test/colt/test_float_matrix2d.rb
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  - test/colt/test_math.rb
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+ - test/colt/test_matrix.rb
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  - test/colt/test_statistics.rb
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  - test/colt/test_stat_list.rb
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  - test/mdarray/arithmetic_casting.rb
@@ -159,18 +173,25 @@ files:
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  - test/mdarray/test_creation.rb
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  - test/mdarray/test_error.rb
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  - test/mdarray/test_lazy.rb
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+ - test/mdarray/test_non_numeric.rb
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  - test/mdarray/test_operator.rb
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  - test/mdarray/test_performance.rb
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  - test/mdarray/test_printing.rb
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+ - test/mdarray/test_sections.rb
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  - test/mdarray/test_shape.rb
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  - test/mdarray/test_trigonometry.rb
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  - test/mdarray/test_views.rb
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+ - test/netcdf/netcdfwriter.rb
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+ - test/netcdf/test_complete.rb
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+ - test/netcdf/test_netcdf.rb
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+ - test/netcdf/test_redefine.rb
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  - test/colt/VALE3.csv
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  - test/colt/VALE3_short-err.csv
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  - test/colt/VALE3_short.csv
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  - test/colt/ColtMethods.xlsx
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  - test/colt/VALE3.xlsx
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  - test/colt/VALE3_short.xlsx
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+ - doc/20130625 MDArray Internals.docx
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  - doc/BinaryOperator.html
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  - doc/BitwiseOperators.html
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  - doc/BooleanFunctions.html
@@ -235,9 +256,9 @@ files:
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  - doc/MDArray/IteratorFastLong.html
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  - doc/MDArray/IteratorFastShort.html
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  - vendor/commons-compiler.jar
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+ - vendor/incanter.jar
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  - vendor/janino.jar
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- - vendor/netcdfAll-4.3.16.jar
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- - vendor/parallelcolt-0.10.0.jar
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+ - vendor/netcdfAll-4.3.18.jar
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  - target/helper.jar
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  - README.md
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  - LICENSE.txt
@@ -250,17 +271,15 @@ require_paths:
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  - lib
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  required_ruby_version: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - '>='
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  - !ruby/object:Gem::Version
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- version: !binary |-
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- MA==
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+ version: '0'
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  none: false
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  required_rubygems_version: !ruby/object:Gem::Requirement
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  requirements:
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- - - ">="
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+ - - '>='
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  - !ruby/object:Gem::Version
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- version: !binary |-
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- MA==
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+ version: '0'
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  none: false
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  requirements: []
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  rubyforge_project:
@@ -271,4 +290,3 @@ summary: Multi dimensional array similar to narray and numpy.
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  test_files:
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  - test/complete.rb
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  - test/env.rb
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- has_rdoc: