mascot-mgf 0.2.2 → 0.2.3
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- data/lib/mascot/mgf/query.rb +4 -1
- data/lib/mascot/mgf/version.rb +1 -1
- data/test/test_mascot-mgf.rb +1 -1
- metadata +6 -6
data/lib/mascot/mgf/query.rb
CHANGED
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@@ -2,7 +2,7 @@ module Mascot
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class MGF
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class Query
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4
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5
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-
attr_accessor :ions, :title, :pepmass, :entry, :charge
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5
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+
attr_accessor :ions, :title, :pepmass, :entry, :charge, :rtinseconds
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# Initializes a spectrum entry from a MGF formatted string or from an Array
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# that is the newline split of MGF 'BEGIN IONS\n...\nEND IONS'
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@@ -15,6 +15,7 @@ module Mascot
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@atts = {}
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@ions = []
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@charge = nil
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+
@rtinseconds = nil
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parse(entry)
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end
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@@ -52,6 +53,8 @@ module Mascot
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@title = $2
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when "CHARGE"
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@charge = $2.to_i
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+
when "RTINSECONDS"
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+
@rtinseconds = $2.to_f
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else
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@atts[$1.downcase.to_sym] = $2
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end
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data/lib/mascot/mgf/version.rb
CHANGED
data/test/test_mascot-mgf.rb
CHANGED
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@@ -48,7 +48,7 @@ class TestMascotMgf < Test::Unit::TestCase
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# move cursor to tenth query
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tenth_query = mgf.query(9)
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assert_equal(tenth_query_title, tenth_query.title)
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-
assert_equal(tenth_query_rtinseconds,
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+
assert_equal(tenth_query_rtinseconds, tenth_query.rtinseconds)
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assert_equal(tenth_query_charge, tenth_query.charge)
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assert_equal(tenth_query_pepmass[0], tenth_query.pepmass[0])
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assert_equal(tenth_query_pepmass[1], tenth_query.pepmass[1])
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metadata
CHANGED
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@@ -1,7 +1,7 @@
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1
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--- !ruby/object:Gem::Specification
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name: mascot-mgf
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version: !ruby/object:Gem::Version
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-
version: 0.2.
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+
version: 0.2.3
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prerelease:
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platform: ruby
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authors:
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@@ -9,11 +9,11 @@ authors:
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autorequire:
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bindir: bin
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cert_chain: []
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-
date: 2012-
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+
date: 2012-07-11 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: rake
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requirement: &
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requirement: &70230942814940 !ruby/object:Gem::Requirement
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none: false
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requirements:
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- - ! '>='
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@@ -21,7 +21,7 @@ dependencies:
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version: '0'
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type: :development
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prerelease: false
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version_requirements: *
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version_requirements: *70230942814940
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description: A parser for Mascot Generic Format (MGF) files
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email:
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- delagoya@gmail.com
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@@ -57,7 +57,7 @@ required_ruby_version: !ruby/object:Gem::Requirement
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version: '0'
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segments:
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- 0
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-
hash:
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hash: 4477718745204745076
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required_rubygems_version: !ruby/object:Gem::Requirement
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none: false
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requirements:
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@@ -66,7 +66,7 @@ required_rubygems_version: !ruby/object:Gem::Requirement
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version: '0'
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segments:
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- 0
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-
hash:
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hash: 4477718745204745076
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requirements: []
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rubyforge_project:
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rubygems_version: 1.8.11
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