malawi_hiv_program_reports 1.1.13 → 1.1.15

checksums.yaml

@@ -1,7 +1,7 @@
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data/app/services/malawi_hiv_program_reports/pepfar/tx_curr_mmd.rb

@@ -0,0 +1,119 @@
+# rubocop:disable Metrics/AbcSize, Metrics/MethodLength, Style/Documentation
+# frozen_string_literal: true
+
+require 'parallel'
+
+module MalawiHivProgramReports
+  module Pepfar
+    class TxCurrMmd
+      include Utils
+      include MalawiHivProgramReports::Utils::CommonSqlQueryUtils
+      include MalawiHivProgramReports::Adapters::Moh::Custom
+
+      attr_accessor :report, :start_date, :end_date, :org, :location
+
+      def initialize(start_date:, end_date:, **kwargs)
+        @start_date = start_date.to_date.strftime('%Y-%m-%d 00:00:00')
+        @end_date = end_date.to_date.strftime('%Y-%m-%d 23:59:59')
+        @org = kwargs[:definition]
+        @location = kwargs[:location]
+        raise 'Location is required' if @location.blank?
+
+        @report = init_report
+      end
+
+      def find_report
+        process_data
+        flatten_the_report
+      rescue StandardError => e
+        Rails.logger.error e.message
+        Rails.logger.error e.backtrace.join("\n")
+        raise e
+      end
+
+      private
+
+      GENDER = %w[Male Female Unknown].freeze
+
+      def init_report
+        pepfar_age_groups.each_with_object({}) do |age_group, report|
+          report[age_group] = GENDER.each_with_object({}) do |gender, age_group_report|
+            age_group_report[gender] = {
+              less_than_three_months: [],
+              three_to_five_months: [],
+              greater_than_six_months: []
+            }
+          end
+        end
+      end
+
+      def process_age_group_report(age_group, gender, age_group_report)
+        {
+          age_group:,
+          gender:,
+          less_than_three_months: age_group_report[:less_than_three_months],
+          three_to_five_months: age_group_report[:three_to_five_months],
+          greater_than_six_months: age_group_report[:greater_than_six_months]
+        }
+      end
+
+      def flatten_the_report
+        result = []
+        report.each do |age_group, age_group_report|
+          age_group_report.each_key do |gender|
+            result << process_age_group_report(age_group, gender, age_group_report[gender])
+          end
+        end
+
+        new_group = pepfar_age_groups.map { |age_group| age_group }
+        new_group << 'All'
+        gender_scores = { 'Female' => 0, 'Male' => 1, 'FNP' => 3, 'FP' => 2, 'FBf' => 4 }
+        result_scores = result.sort_by do |item|
+          gender_score = gender_scores[item[:gender]] || 999
+          age_group_score = new_group.index(item[:age_group]) || 999
+          [gender_score, age_group_score]
+        end
+        # remove all unknown age groups
+        result_scores.reject { |item| item[:age_group].match?(/unknown/i) }
+      end
+
+      def process_data
+        patients = ActiveRecord::Base.connection.select_all <<~SQL
+          SELECT tesd.patient_id,
+              CASE tesd.gender
+                WHEN 'M' THEN 'Male'
+                WHEN 'F' THEN 'Female'
+                ELSE 'Unknown'
+              END gender,
+              disaggregated_age_group(tesd.birthdate, '#{end_date}') age_group,
+              TIMESTAMPDIFF(DAY, tcm.start_date, tcm.auto_expire_date) prescribed_days
+          FROM cdr_temp_cohort_members #{current_partition} tesd#{' '}
+          INNER JOIN cdr_temp_patient_outcomes #{current_partition} tpo ON tpo.patient_id = tesd.patient_id AND tpo.cum_outcome = 'On antiretrovirals'
+          INNER JOIN cdr_temp_min_auto_expire_date #{current_partition} tcm ON tcm.patient_id = tesd.patient_id
+          WHERE tesd.date_enrolled <= '#{end_date}'
+        SQL
+
+        return report if patients.blank?
+
+        patients.each do |patient|
+          prescribe_days = patient['prescribed_days'].to_i
+          age_group = patient['age_group']
+          gender = patient['gender']
+
+          indicator = if prescribe_days < 90
+                        'less_than_three_months'
+                      elsif prescribe_days >= 90 && prescribe_days <= 150
+                        'three_to_five_months'
+                      elsif prescribe_days > 150
+                        'greater_than_six_months'
+                      end
+
+          report[age_group][gender][indicator.to_sym] << patient['patient_id']
+        end
+
+        report
+      end
+    end
+  end
+end
+# rubocop:enable Metrics/AbcSize, Metrics/MethodLength, Style/Documentation

data/app/services/malawi_hiv_program_reports/pepfar/tx_rtt.rb

@@ -154,7 +154,6 @@ module MalawiHivProgramReports
           INNER JOIN cdr_temp_current_state_start #{current_partition} c ON c.patient_id = e.patient_id
           INNER JOIN cdr_temp_max_drug_orders #{current_partition} ord ON ord.patient_id = e.patient_id
           LEFT JOIN obs #{current_partition} cd4_result ON cd4_result.person_id = e.patient_id AND cd4_result.concept_id = #{concept_name('CD4 count').concept_id} AND cd4_result.voided = 0
-          WHERE e.date_enrolled < #{start_date}
           GROUP BY e.patient_id
         SQL
       end

data/app/services/malawi_hiv_program_reports/report_map.rb

@@ -52,7 +52,8 @@ module MalawiHivProgramReports
       'HYPERTENSION_REPORT' => MalawiHivProgramReports::Clinic::HypertensionReport,
       'TX_NEW' => MalawiHivProgramReports::Pepfar::TxNew,
       'CUMULATIVE_COHORT' => MalawiHivProgramReports::Moh::CumulativeCohort,
-      'CUMULATIVE_OUTCOME' => MalawiHivProgramReports::Moh::CumulativeOutcome
+      'CUMULATIVE_OUTCOME' => MalawiHivProgramReports::Moh::CumulativeOutcome,
+      'TX_CURR_MMD' => MalawiHivProgramReports::Pepfar::TxCurrMmd
     }.freeze
   end
 end

data/lib/malawi_hiv_program_reports/version.rb

@@ -1,5 +1,5 @@
 # frozen_string_literal: true
 
 module MalawiHivProgramReports
-  VERSION = '1.1.13'
+  VERSION = '1.1.15'
 end

metadata

@@ -1,14 +1,14 @@
 --- !ruby/object:Gem::Specification
 name: malawi_hiv_program_reports
 version: !ruby/object:Gem::Version
-  version: 1.1.13
+  version: 1.1.15
 platform: ruby
 authors:
 - Roy Chanunkha
 autorequire:
 bindir: bin
 cert_chain: []
-date: 2024-06-29 00:00:00.000000000 Z
+date: 2024-07-23 00:00:00.000000000 Z
 dependencies:
 - !ruby/object:Gem::Dependency
   name: rails
@@ -151,6 +151,7 @@ files:
 - app/services/malawi_hiv_program_reports/pepfar/tb_prev2.rb
 - app/services/malawi_hiv_program_reports/pepfar/tb_prev3.rb
 - app/services/malawi_hiv_program_reports/pepfar/tpt_status.rb
+- app/services/malawi_hiv_program_reports/pepfar/tx_curr_mmd.rb
 - app/services/malawi_hiv_program_reports/pepfar/tx_ml.rb
 - app/services/malawi_hiv_program_reports/pepfar/tx_new.rb
 - app/services/malawi_hiv_program_reports/pepfar/tx_rtt.rb