lsa 0.1.0 → 0.1.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- checksums.yaml +4 -4
- data/lib/lsa.rb +4 -6
- data/lib/lsa/version.rb +1 -1
- data/test_files/mapping_with_bad_group_name.txt +4 -0
- metadata +3 -4
- data/test_files/#cluster_file.txt# +0 -3
- data/test_files/.#cluster_file.txt +0 -1
checksums.yaml
CHANGED
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@@ -1,7 +1,7 @@
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1
1
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---
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2
2
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SHA1:
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3
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-
metadata.gz:
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4
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-
data.tar.gz:
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3
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+
metadata.gz: bce829681f089991e590e51004e9f005aeeaf5fd
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4
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+
data.tar.gz: f593d26fb0b6acfcc6fab9b78a9ffaefc42e2e1e
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5
5
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SHA512:
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6
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-
metadata.gz:
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7
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-
data.tar.gz:
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6
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+
metadata.gz: ed48ee109b8b9716f1d0005b6115a40afb4497da06222d12f935662aead64534b3e5d0ba2c8e24be2f9f1e260281b2124cf5e1c835080b1ff0120a14543de109
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7
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+
data.tar.gz: 81a6f135ec5217025dbcc4ba16620ccb8292454d6b91453e5fd4cb2ee446dcb891f065c0c1eab345e510bf7bc838fe934c4a68d2374255f71cb729c2a3d34377
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data/lib/lsa.rb
CHANGED
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@@ -4,26 +4,24 @@ require "abort_if"
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4
4
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include AbortIf
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6
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7
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-
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8
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-
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9
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-
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10
7
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module Lsa
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11
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-
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12
8
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def clean_str str
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13
9
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str.strip.gsub(/[^\p{Alnum}_]+/, "_").gsub(/_+/, "_")
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14
10
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end
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11
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-
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12
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def parse_mapping_file mapping_fname, mmseqs_final_outf
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data_labels = []
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14
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label2outf = {}
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doc2new_doc = {}
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File.open(mapping_fname, "rt").each_line.with_index do |line, idx|
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if idx.zero?
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-
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+
current_label, *data_labels = line.chomp.split("\t").map do |str|
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clean_str str
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end
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+
abort_if data_labels.any? { |label| label == "original" },
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"Illegal data label: 'original'. Please change it."
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24
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+
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abort_unless data_labels.uniq.count == data_labels.count,
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"The data labels are not unique in #{mapping_fname}"
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27
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data/lib/lsa/version.rb
CHANGED
metadata
CHANGED
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@@ -1,14 +1,14 @@
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1
1
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--- !ruby/object:Gem::Specification
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2
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name: lsa
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3
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version: !ruby/object:Gem::Version
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4
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-
version: 0.1.
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4
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+
version: 0.1.1
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platform: ruby
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authors:
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- Ryan Moore
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autorequire:
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bindir: exe
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cert_chain: []
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-
date: 2017-
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+
date: 2017-08-10 00:00:00.000000000 Z
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dependencies:
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- !ruby/object:Gem::Dependency
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name: abort_if
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@@ -109,14 +109,13 @@ files:
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109
109
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- lib/lsa.rb
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110
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- lib/lsa/version.rb
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111
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- lsa.gemspec
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112
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-
- test_files/#cluster_file.txt#
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113
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-
- test_files/.#cluster_file.txt
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114
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- test_files/cluster_file_another_group.txt
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115
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- test_files/cluster_file_group.txt
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116
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- test_files/cluster_file_original.txt
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117
115
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- test_files/e_coli.faa.gz
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118
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- test_files/m_mazei.faa.gz
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119
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- test_files/mapping.txt
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118
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+
- test_files/mapping_with_bad_group_name.txt
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120
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- test_files/s_flexneri.faa.gz
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- test_files/small/e_coli.faa.gz
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- test_files/small/m_mazei.faa.gz
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@@ -1 +0,0 @@
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1
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-
test_files/moorer@roaming-254-155.host.udel.edu.943
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