loadmop 0.0.4 → 0.0.5
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- checksums.yaml +4 -4
- data/CHANGELOG.md +15 -0
- data/README.md +1 -0
- data/lib/loadmop/cdmv4_loader.rb +406 -17
- data/lib/loadmop/cli.rb +19 -1
- data/lib/loadmop/loader.rb +42 -15
- data/lib/loadmop/version.rb +1 -1
- data/lib/loadmop/vocab_loader.rb +116 -4
- data/loadmop.gemspec +1 -1
- metadata +6 -10
- data/schemas/cdmv4/001_tables.rb +0 -256
- data/schemas/cdmv4/002_indexes.rb +0 -145
- data/schemas/vocabulary/001_tables.rb +0 -96
- data/schemas/vocabulary/002_indexes.rb +0 -24
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA1:
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-
metadata.gz:
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-
data.tar.gz:
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+
metadata.gz: 29603109f634075f4bb3db87f6603f365c97a974
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4
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data.tar.gz: 56326ee8b9aa7310ec40c5a30e4d8840bb85fec3
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SHA512:
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metadata.gz:
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data.tar.gz:
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+
metadata.gz: ee75959db2094edbc48f1912dd3572be6e0a0934bbea869204b26dd92946d63fc5f7f64c63c979062dac3291a8a668897b4b8e81ef2bc1f651d1a5904f0347c6
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7
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data.tar.gz: d080e12de2980d8fd1de0a57cadef04a7d29774886c9f4a7d0fc1891d69460c600ba9e70890e8360247e799d544036772985ea7b2932971b42a743512fc51db8
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data/CHANGELOG.md
CHANGED
@@ -1,6 +1,21 @@
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1
1
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# Changelog
|
2
2
|
All notable changes to this project will be documented in this file.
|
3
3
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|
4
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+
## 0.0.5 - 2014-09-03
|
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+
|
6
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+
### Added
|
7
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+
- Support for SQL Server.
|
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+
|
9
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+
### Deprecated
|
10
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- Nothing.
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11
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+
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12
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### Removed
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+
- Nothing.
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14
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+
|
15
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+
### Fixed
|
16
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+
- Bumped Sequelizer version to 0.0.5
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+
|
18
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+
|
4
19
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## 0.0.4 - 2014-08-29
|
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20
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|
6
21
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### Added
|
data/README.md
CHANGED
@@ -54,6 +54,7 @@ Then:
|
|
54
54
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- **Create the database you just specified in your .env file**
|
55
55
|
- loadmop isn't (yet) cool enough to actually create the database for you
|
56
56
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- If you're using SQLite, you don't have to create the database file
|
57
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+
- **If your database defaults to using case-insensitive storage of text, (I'm looking at you MySQL and SQL Server), make sure to set a case-sensitive collation on your database**
|
57
58
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- cd into a directory where you've defined a config/database.yml or .env file that is compatible with Sequelizer
|
58
59
|
- run `bundle install` to make sure you have all the needed dependencies installed
|
59
60
|
- run `bundle exec sequelizer config` to ensure your connection parameters are correctly set
|
data/lib/loadmop/cdmv4_loader.rb
CHANGED
@@ -3,28 +3,12 @@ require_relative 'loader'
|
|
3
3
|
module Loadmop
|
4
4
|
class CDMv4Loader < Loader
|
5
5
|
|
6
|
-
def initialize(*args)
|
7
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-
super(*args)
|
8
|
-
set_schema_if_necessary
|
9
|
-
end
|
10
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-
|
11
6
|
private
|
12
7
|
|
13
|
-
def
|
14
|
-
'schemas/cdmv4'
|
15
|
-
end
|
16
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-
|
17
|
-
def files
|
8
|
+
def files_of_interest
|
18
9
|
ordered_file_names.map { |name| data_files_dir + name }.select(&:exist?)
|
19
10
|
end
|
20
11
|
|
21
|
-
def set_schema_if_necessary
|
22
|
-
return unless adapter == 'postgres'
|
23
|
-
return unless options[:schema]
|
24
|
-
db.create_schema(options[:schema], if_not_exists: true)
|
25
|
-
db.execute("SET search_path TO #{options[:schema]}")
|
26
|
-
end
|
27
|
-
|
28
12
|
def ordered_tables
|
29
13
|
%w(
|
30
14
|
person
|
@@ -50,5 +34,410 @@ module Loadmop
|
|
50
34
|
def ordered_file_names
|
51
35
|
ordered_tables.map { |f| f + '.csv' }
|
52
36
|
end
|
37
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+
|
38
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+
def create_tables
|
39
|
+
create_schema_if_necessary
|
40
|
+
location_table = table_name(:location)
|
41
|
+
provider_table = table_name(:provider)
|
42
|
+
person_table = table_name(:person)
|
43
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+
drug_exposure_table = table_name(:drug_exposure)
|
44
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+
procedure_occurrence_table = table_name(:procedure_occurrence)
|
45
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+
db.create_table!(table_name(:care_site), :ignore_index_errors=>true) do
|
46
|
+
Bignum :care_site_id, :null=>false
|
47
|
+
Bignum :location_id, :null=>false
|
48
|
+
Bignum :organization_id, :null=>false
|
49
|
+
Bignum :place_of_service_concept_id
|
50
|
+
String :care_site_source_value, :size=>50
|
51
|
+
String :place_of_service_source_value, :size=>50, :null=>false
|
52
|
+
|
53
|
+
primary_key [:care_site_id]
|
54
|
+
end
|
55
|
+
|
56
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+
db.create_table!(table_name(:cohort), :ignore_index_errors=>true) do
|
57
|
+
Bignum :cohort_id, :null=>false
|
58
|
+
Bignum :cohort_concept_id, :null=>false
|
59
|
+
Date :cohort_start_date, :null=>false
|
60
|
+
Date :cohort_end_date
|
61
|
+
Bignum :subject_id, :null=>false
|
62
|
+
String :stop_reason, :size=>20
|
63
|
+
|
64
|
+
primary_key [:cohort_id]
|
65
|
+
end
|
66
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+
|
67
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+
db.create_table!(table_name(:location), :ignore_index_errors=>true) do
|
68
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+
Bignum :location_id, :null=>false
|
69
|
+
String :address_1, :size=>50
|
70
|
+
String :address_2, :size=>50
|
71
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+
String :city, :size=>50
|
72
|
+
String :state, :size=>2, :fixed=>true
|
73
|
+
String :zip, :size=>9
|
74
|
+
String :county, :size=>20
|
75
|
+
String :location_source_value, :size=>50
|
76
|
+
|
77
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+
primary_key [:location_id]
|
78
|
+
end
|
79
|
+
|
80
|
+
db.create_table!(table_name(:provider), :ignore_index_errors=>true) do
|
81
|
+
Bignum :provider_id, :null=>false
|
82
|
+
String :npi, :size=>20
|
83
|
+
String :dea, :size=>20
|
84
|
+
Bignum :specialty_concept_id
|
85
|
+
Bignum :care_site_id, :null=>false
|
86
|
+
String :provider_source_value, :size=>50, :null=>false
|
87
|
+
String :specialty_source_value, :size=>50
|
88
|
+
|
89
|
+
primary_key [:provider_id]
|
90
|
+
end
|
91
|
+
|
92
|
+
db.create_table!(table_name(:organization), :ignore_index_errors=>true) do
|
93
|
+
Bignum :organization_id, :null=>false
|
94
|
+
Bignum :place_of_service_concept_id
|
95
|
+
foreign_key :location_id, location_table, :type=>Bignum, :key=>[:location_id]
|
96
|
+
String :organization_source_value, :size=>50, :null=>false
|
97
|
+
String :place_of_service_source_value, :size=>50
|
98
|
+
|
99
|
+
primary_key [:organization_id]
|
100
|
+
end
|
101
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+
|
102
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+
db.create_table!(table_name(:person), :ignore_index_errors=>true) do
|
103
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+
Bignum :person_id, :null=>false
|
104
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+
Bignum :gender_concept_id, :null=>false
|
105
|
+
Integer :year_of_birth, :null=>false
|
106
|
+
Integer :month_of_birth
|
107
|
+
Integer :day_of_birth
|
108
|
+
Bignum :race_concept_id
|
109
|
+
Bignum :ethnicity_concept_id
|
110
|
+
foreign_key :location_id, location_table, :type=>Bignum, :key=>[:location_id]
|
111
|
+
foreign_key :provider_id, provider_table, :type=>Bignum, :key=>[:provider_id]
|
112
|
+
Bignum :care_site_id
|
113
|
+
String :person_source_value, :size=>50
|
114
|
+
String :gender_source_value, :size=>50
|
115
|
+
String :race_source_value, :size=>50
|
116
|
+
String :ethnicity_source_value, :size=>50
|
117
|
+
|
118
|
+
primary_key [:person_id]
|
119
|
+
end
|
120
|
+
|
121
|
+
db.create_table!(table_name(:condition_era), :ignore_index_errors=>true) do
|
122
|
+
Bignum :condition_era_id, :null=>false
|
123
|
+
foreign_key :person_id, person_table, :type=>Bignum, :null=>false, :key=>[:person_id]
|
124
|
+
Bignum :condition_concept_id, :null=>false
|
125
|
+
Date :condition_era_start_date, :null=>false
|
126
|
+
Date :condition_era_end_date, :null=>false
|
127
|
+
Bignum :condition_type_concept_id, :null=>false
|
128
|
+
Integer :condition_occurrence_count
|
129
|
+
|
130
|
+
primary_key [:condition_era_id]
|
131
|
+
end
|
132
|
+
|
133
|
+
db.create_table!(table_name(:condition_occurrence), :ignore_index_errors=>true) do
|
134
|
+
Bignum :condition_occurrence_id, :null=>false
|
135
|
+
foreign_key :person_id, person_table, :type=>Bignum, :null=>false, :key=>[:person_id]
|
136
|
+
Bignum :condition_concept_id, :null=>false
|
137
|
+
Date :condition_start_date, :null=>false
|
138
|
+
Date :condition_end_date
|
139
|
+
Bignum :condition_type_concept_id, :null=>false
|
140
|
+
String :stop_reason, :size=>20
|
141
|
+
Bignum :associated_provider_id
|
142
|
+
Bignum :visit_occurrence_id
|
143
|
+
String :condition_source_value, :size=>50
|
144
|
+
|
145
|
+
primary_key [:condition_occurrence_id]
|
146
|
+
end
|
147
|
+
|
148
|
+
db.create_table!(table_name(:death), :ignore_index_errors=>true) do
|
149
|
+
foreign_key :person_id, person_table, :type=>Bignum, :null=>false, :key=>[:person_id]
|
150
|
+
Date :death_date, :null=>false
|
151
|
+
Bignum :death_type_concept_id, :null=>false
|
152
|
+
Bignum :cause_of_death_concept_id
|
153
|
+
String :cause_of_death_source_value, :size=>50
|
154
|
+
|
155
|
+
primary_key [:person_id]
|
156
|
+
end
|
157
|
+
|
158
|
+
db.create_table!(table_name(:drug_era), :ignore_index_errors=>true) do
|
159
|
+
Bignum :drug_era_id, :null=>false
|
160
|
+
foreign_key :person_id, person_table, :type=>Bignum, :null=>false, :key=>[:person_id]
|
161
|
+
Bignum :drug_concept_id, :null=>false
|
162
|
+
Date :drug_era_start_date, :null=>false
|
163
|
+
Date :drug_era_end_date, :null=>false
|
164
|
+
Bignum :drug_type_concept_id, :null=>false
|
165
|
+
Integer :drug_exposure_count
|
166
|
+
|
167
|
+
primary_key [:drug_era_id]
|
168
|
+
end
|
169
|
+
|
170
|
+
db.create_table!(table_name(:drug_exposure), :ignore_index_errors=>true) do
|
171
|
+
Bignum :drug_exposure_id, :null=>false
|
172
|
+
foreign_key :person_id, person_table, :type=>Bignum, :null=>false, :key=>[:person_id]
|
173
|
+
Bignum :drug_concept_id, :null=>false
|
174
|
+
Date :drug_exposure_start_date, :null=>false
|
175
|
+
Date :drug_exposure_end_date
|
176
|
+
Bignum :drug_type_concept_id, :null=>false
|
177
|
+
String :stop_reason, :size=>20
|
178
|
+
Integer :refills
|
179
|
+
Integer :quantity
|
180
|
+
Integer :days_supply
|
181
|
+
String :sig, :size=>500
|
182
|
+
Bignum :prescribing_provider_id
|
183
|
+
Bignum :visit_occurrence_id
|
184
|
+
Bignum :relevant_condition_concept_id
|
185
|
+
String :drug_source_value, :size=>50
|
186
|
+
|
187
|
+
primary_key [:drug_exposure_id]
|
188
|
+
end
|
189
|
+
|
190
|
+
db.create_table!(table_name(:observation), :ignore_index_errors=>true) do
|
191
|
+
Bignum :observation_id, :null=>false
|
192
|
+
foreign_key :person_id, person_table, :type=>Bignum, :null=>false, :key=>[:person_id]
|
193
|
+
Bignum :observation_concept_id, :null=>false
|
194
|
+
Date :observation_date, :null=>false
|
195
|
+
Date :observation_time
|
196
|
+
Float :value_as_number
|
197
|
+
String :value_as_string, :size=>60
|
198
|
+
Bignum :value_as_concept_id
|
199
|
+
Bignum :unit_concept_id
|
200
|
+
Float :range_low
|
201
|
+
Float :range_high
|
202
|
+
Bignum :observation_type_concept_id, :null=>false
|
203
|
+
Bignum :associated_provider_id
|
204
|
+
Bignum :visit_occurrence_id
|
205
|
+
Bignum :relevant_condition_concept_id
|
206
|
+
String :observation_source_value, :size=>50
|
207
|
+
String :units_source_value, :size=>50
|
208
|
+
|
209
|
+
primary_key [:observation_id]
|
210
|
+
end
|
211
|
+
|
212
|
+
db.create_table!(table_name(:observation_period), :ignore_index_errors=>true) do
|
213
|
+
Bignum :observation_period_id, :null=>false
|
214
|
+
foreign_key :person_id, person_table, :type=>Bignum, :null=>false, :key=>[:person_id]
|
215
|
+
Date :observation_period_start_date, :null=>false
|
216
|
+
Date :observation_period_end_date, :null=>false
|
217
|
+
Date :prev_ds_period_end_date
|
218
|
+
|
219
|
+
primary_key [:observation_period_id]
|
220
|
+
end
|
221
|
+
|
222
|
+
db.create_table!(table_name(:payer_plan_period), :ignore_index_errors=>true) do
|
223
|
+
Bignum :payer_plan_period_id, :null=>false
|
224
|
+
foreign_key :person_id, person_table, :type=>Bignum, :null=>false, :key=>[:person_id]
|
225
|
+
Date :payer_plan_period_start_date, :null=>false
|
226
|
+
Date :payer_plan_period_end_date, :null=>false
|
227
|
+
String :payer_source_value, :size=>50
|
228
|
+
String :plan_source_value, :size=>50
|
229
|
+
String :family_source_value, :size=>50
|
230
|
+
Date :prev_ds_period_end_date
|
231
|
+
|
232
|
+
primary_key [:payer_plan_period_id]
|
233
|
+
end
|
234
|
+
|
235
|
+
db.create_table!(table_name(:procedure_occurrence), :ignore_index_errors=>true) do
|
236
|
+
Bignum :procedure_occurrence_id, :null=>false
|
237
|
+
foreign_key :person_id, person_table, :type=>Bignum, :null=>false, :key=>[:person_id]
|
238
|
+
Bignum :procedure_concept_id, :null=>false
|
239
|
+
Date :procedure_date, :null=>false
|
240
|
+
Bignum :procedure_type_concept_id, :null=>false
|
241
|
+
Bignum :associated_provider_id
|
242
|
+
Bignum :visit_occurrence_id
|
243
|
+
Bignum :relevant_condition_concept_id
|
244
|
+
String :procedure_source_value, :size=>50
|
245
|
+
|
246
|
+
primary_key [:procedure_occurrence_id]
|
247
|
+
end
|
248
|
+
|
249
|
+
db.create_table!(table_name(:visit_occurrence), :ignore_index_errors=>true) do
|
250
|
+
Bignum :visit_occurrence_id, :null=>false
|
251
|
+
foreign_key :person_id, person_table, :type=>Bignum, :null=>false, :key=>[:person_id]
|
252
|
+
Date :visit_start_date, :null=>false
|
253
|
+
Date :visit_end_date, :null=>false
|
254
|
+
Bignum :place_of_service_concept_id, :null=>false
|
255
|
+
Bignum :care_site_id
|
256
|
+
String :place_of_service_source_value, :size=>50
|
257
|
+
|
258
|
+
primary_key [:visit_occurrence_id]
|
259
|
+
end
|
260
|
+
|
261
|
+
db.create_table!(table_name(:drug_cost), :ignore_index_errors=>true) do
|
262
|
+
Bignum :drug_cost_id, :null=>false
|
263
|
+
foreign_key :drug_exposure_id, drug_exposure_table, :type=>Bignum, :null=>false, :key=>[:drug_exposure_id]
|
264
|
+
Float :paid_copay
|
265
|
+
Float :paid_coinsurance
|
266
|
+
Float :paid_toward_deductible
|
267
|
+
Float :paid_by_payer
|
268
|
+
Float :paid_by_coordination_benefits
|
269
|
+
Float :total_out_of_pocket
|
270
|
+
Float :total_paid
|
271
|
+
Float :ingredient_cost
|
272
|
+
Float :dispensing_fee
|
273
|
+
Float :average_wholesale_price
|
274
|
+
Bignum :payer_plan_period_id
|
275
|
+
|
276
|
+
primary_key [:drug_cost_id]
|
277
|
+
end
|
278
|
+
|
279
|
+
db.create_table!(table_name(:procedure_cost), :ignore_index_errors=>true) do
|
280
|
+
Bignum :procedure_cost_id, :null=>false
|
281
|
+
foreign_key :procedure_occurrence_id, procedure_occurrence_table, :type=>Bignum, :null=>false, :key=>[:procedure_occurrence_id]
|
282
|
+
Float :paid_copay
|
283
|
+
Float :paid_coinsurance
|
284
|
+
Float :paid_toward_deductible
|
285
|
+
Float :paid_by_payer
|
286
|
+
Float :paid_by_coordination_benefits
|
287
|
+
Float :total_out_of_pocket
|
288
|
+
Float :total_paid
|
289
|
+
Bignum :disease_class_concept_id
|
290
|
+
Bignum :revenue_code_concept_id
|
291
|
+
Bignum :payer_plan_period_id
|
292
|
+
String :disease_class_source_value, :size=>50
|
293
|
+
String :revenue_code_source_value, :size=>50
|
294
|
+
|
295
|
+
primary_key [:procedure_cost_id]
|
296
|
+
end
|
297
|
+
end
|
298
|
+
|
299
|
+
def create_indexes
|
300
|
+
db.alter_table(table_name(:care_site)) do
|
301
|
+
add_index [:location_id, :organization_id, :place_of_service_source_value], :name=>:care_site_location_id_organization_id_place_of_service_sour_key, :unique=>true, :ignore_add_index_errors=>true
|
302
|
+
add_index [:care_site_id], :name=>:carsit_carsitid, :ignore_add_index_errors=>true
|
303
|
+
add_index [:location_id], :name=>:carsit_locid, :ignore_add_index_errors=>true
|
304
|
+
add_index [:organization_id], :name=>:carsit_orgid, :ignore_add_index_errors=>true
|
305
|
+
add_index [:place_of_service_concept_id], :name=>:carsit_plaofserconid, :ignore_add_index_errors=>true
|
306
|
+
add_index [:location_id, :organization_id, :place_of_service_source_value, :care_site_id], :name=>:idx_care_site_org_sources, :ignore_add_index_errors=>true
|
307
|
+
end
|
308
|
+
|
309
|
+
db.alter_table(table_name(:cohort)) do
|
310
|
+
add_index [:cohort_concept_id], :name=>:coh_cohconid, :ignore_add_index_errors=>true
|
311
|
+
add_index [:cohort_id], :name=>:coh_cohid, :ignore_add_index_errors=>true
|
312
|
+
add_index [:subject_id], :name=>:coh_subid, :ignore_add_index_errors=>true
|
313
|
+
end
|
314
|
+
|
315
|
+
db.alter_table(table_name(:location)) do
|
316
|
+
add_index [:location_id], :name=>:loc_locid, :ignore_add_index_errors=>true
|
317
|
+
add_index [:zip, :county], :name=>:location_zip_county_key, :unique=>true, :ignore_add_index_errors=>true
|
318
|
+
end
|
319
|
+
|
320
|
+
db.alter_table(table_name(:provider)) do
|
321
|
+
add_index [:provider_source_value, :specialty_source_value, :provider_id, :care_site_id], :name=>:idx_provider_lkp, :ignore_add_index_errors=>true
|
322
|
+
add_index [:care_site_id], :name=>:pro_carsitid, :ignore_add_index_errors=>true
|
323
|
+
add_index [:provider_id], :name=>:pro_proid, :ignore_add_index_errors=>true
|
324
|
+
add_index [:specialty_concept_id], :name=>:pro_speconid, :ignore_add_index_errors=>true
|
325
|
+
end
|
326
|
+
|
327
|
+
db.alter_table(table_name(:organization)) do
|
328
|
+
add_index [:location_id], :name=>:org_locid, :ignore_add_index_errors=>true
|
329
|
+
add_index [:organization_id], :name=>:org_orgid, :ignore_add_index_errors=>true
|
330
|
+
add_index [:place_of_service_concept_id], :name=>:org_plaofserconid, :ignore_add_index_errors=>true
|
331
|
+
end
|
332
|
+
|
333
|
+
db.alter_table(table_name(:person)) do
|
334
|
+
add_index [:care_site_id], :name=>:per_carsitid, :ignore_add_index_errors=>true
|
335
|
+
add_index [:ethnicity_concept_id], :name=>:per_ethconid, :ignore_add_index_errors=>true
|
336
|
+
add_index [:gender_concept_id], :name=>:per_genconid, :ignore_add_index_errors=>true
|
337
|
+
add_index [:location_id], :name=>:per_locid, :ignore_add_index_errors=>true
|
338
|
+
add_index [:person_id], :name=>:per_perid, :ignore_add_index_errors=>true
|
339
|
+
add_index [:provider_id], :name=>:per_proid, :ignore_add_index_errors=>true
|
340
|
+
add_index [:race_concept_id], :name=>:per_racconid, :ignore_add_index_errors=>true
|
341
|
+
end
|
342
|
+
|
343
|
+
db.alter_table(table_name(:condition_era)) do
|
344
|
+
add_index [:condition_concept_id], :name=>:conera_conconid, :ignore_add_index_errors=>true
|
345
|
+
add_index [:condition_era_id], :name=>:conera_coneraid, :ignore_add_index_errors=>true
|
346
|
+
add_index [:condition_type_concept_id], :name=>:conera_contypconid, :ignore_add_index_errors=>true
|
347
|
+
add_index [:person_id], :name=>:conera_perid, :ignore_add_index_errors=>true
|
348
|
+
end
|
349
|
+
|
350
|
+
db.alter_table(table_name(:condition_occurrence)) do
|
351
|
+
add_index [:condition_concept_id], :name=>:cci, :ignore_add_index_errors=>true
|
352
|
+
add_index [:associated_provider_id], :name=>:conocc_assproid, :ignore_add_index_errors=>true
|
353
|
+
add_index [:condition_concept_id], :name=>:conocc_conconid, :ignore_add_index_errors=>true
|
354
|
+
add_index [:condition_occurrence_id], :name=>:conocc_conoccid, :ignore_add_index_errors=>true
|
355
|
+
add_index [:condition_source_value], :name=>:conocc_consouval, :ignore_add_index_errors=>true
|
356
|
+
add_index [:condition_type_concept_id], :name=>:conocc_contypconid, :ignore_add_index_errors=>true
|
357
|
+
add_index [:person_id], :name=>:conocc_perid, :ignore_add_index_errors=>true
|
358
|
+
add_index [:visit_occurrence_id], :name=>:conocc_visoccid, :ignore_add_index_errors=>true
|
359
|
+
add_index [:visit_occurrence_id], :name=>:voi, :ignore_add_index_errors=>true
|
360
|
+
end
|
361
|
+
|
362
|
+
db.alter_table(table_name(:death)) do
|
363
|
+
add_index [:cause_of_death_concept_id], :name=>:dea_cauofdeaconid, :ignore_add_index_errors=>true
|
364
|
+
add_index [:death_type_concept_id], :name=>:dea_deatypconid, :ignore_add_index_errors=>true
|
365
|
+
add_index [:person_id], :name=>:dea_perid, :ignore_add_index_errors=>true
|
366
|
+
end
|
367
|
+
|
368
|
+
db.alter_table(table_name(:drug_era)) do
|
369
|
+
add_index [:drug_concept_id], :name=>:druera_druconid, :ignore_add_index_errors=>true
|
370
|
+
add_index [:drug_era_id], :name=>:druera_drueraid, :ignore_add_index_errors=>true
|
371
|
+
add_index [:drug_type_concept_id], :name=>:druera_drutypconid, :ignore_add_index_errors=>true
|
372
|
+
add_index [:person_id], :name=>:druera_perid, :ignore_add_index_errors=>true
|
373
|
+
end
|
374
|
+
|
375
|
+
db.alter_table(table_name(:drug_exposure)) do
|
376
|
+
add_index [:drug_concept_id], :name=>:druexp_druconid, :ignore_add_index_errors=>true
|
377
|
+
add_index [:drug_exposure_id], :name=>:druexp_druexpid, :ignore_add_index_errors=>true
|
378
|
+
add_index [:drug_type_concept_id], :name=>:druexp_drutypconid, :ignore_add_index_errors=>true
|
379
|
+
add_index [:person_id], :name=>:druexp_perid, :ignore_add_index_errors=>true
|
380
|
+
add_index [:prescribing_provider_id], :name=>:druexp_preproid, :ignore_add_index_errors=>true
|
381
|
+
add_index [:relevant_condition_concept_id], :name=>:druexp_relconconid, :ignore_add_index_errors=>true
|
382
|
+
add_index [:visit_occurrence_id], :name=>:druexp_visoccid, :ignore_add_index_errors=>true
|
383
|
+
end
|
384
|
+
|
385
|
+
db.alter_table(table_name(:observation)) do
|
386
|
+
add_index [:associated_provider_id], :name=>:obs_assproid, :ignore_add_index_errors=>true
|
387
|
+
add_index [:observation_concept_id], :name=>:obs_obsconid, :ignore_add_index_errors=>true
|
388
|
+
add_index [:observation_id], :name=>:obs_obsid, :ignore_add_index_errors=>true
|
389
|
+
add_index [:observation_type_concept_id], :name=>:obs_obstypconid, :ignore_add_index_errors=>true
|
390
|
+
add_index [:person_id], :name=>:obs_perid, :ignore_add_index_errors=>true
|
391
|
+
add_index [:relevant_condition_concept_id], :name=>:obs_relconconid, :ignore_add_index_errors=>true
|
392
|
+
add_index [:unit_concept_id], :name=>:obs_uniconid, :ignore_add_index_errors=>true
|
393
|
+
add_index [:value_as_concept_id], :name=>:obs_valasconid, :ignore_add_index_errors=>true
|
394
|
+
add_index [:visit_occurrence_id], :name=>:obs_visoccid, :ignore_add_index_errors=>true
|
395
|
+
end
|
396
|
+
|
397
|
+
db.alter_table(table_name(:observation_period)) do
|
398
|
+
add_index [:person_id, :observation_period_start_date, :observation_period_end_date], :name=>:idx_observation_period_lkp, :ignore_add_index_errors=>true
|
399
|
+
add_index [:observation_period_id], :name=>:obsper_obsperid, :ignore_add_index_errors=>true
|
400
|
+
add_index [:person_id], :name=>:obsper_perid, :ignore_add_index_errors=>true
|
401
|
+
end
|
402
|
+
|
403
|
+
db.alter_table(table_name(:payer_plan_period)) do
|
404
|
+
add_index [:person_id, :plan_source_value, :payer_plan_period_start_date, :payer_plan_period_end_date], :name=>:idx_payer_plan_period_lkp, :ignore_add_index_errors=>true
|
405
|
+
add_index [:payer_plan_period_id], :name=>:payplaper_payplaperid, :ignore_add_index_errors=>true
|
406
|
+
add_index [:person_id], :name=>:payplaper_perid, :ignore_add_index_errors=>true
|
407
|
+
end
|
408
|
+
|
409
|
+
db.alter_table(table_name(:procedure_occurrence)) do
|
410
|
+
add_index [:associated_provider_id], :name=>:proocc_assproid, :ignore_add_index_errors=>true
|
411
|
+
add_index [:person_id], :name=>:proocc_perid, :ignore_add_index_errors=>true
|
412
|
+
add_index [:procedure_concept_id], :name=>:proocc_proconid, :ignore_add_index_errors=>true
|
413
|
+
add_index [:procedure_occurrence_id], :name=>:proocc_prooccid, :ignore_add_index_errors=>true
|
414
|
+
add_index [:procedure_source_value], :name=>:proocc_prosouval, :ignore_add_index_errors=>true
|
415
|
+
add_index [:procedure_type_concept_id], :name=>:proocc_protypconid, :ignore_add_index_errors=>true
|
416
|
+
add_index [:relevant_condition_concept_id], :name=>:proocc_relconconid, :ignore_add_index_errors=>true
|
417
|
+
add_index [:visit_occurrence_id], :name=>:proocc_visoccid, :ignore_add_index_errors=>true
|
418
|
+
end
|
419
|
+
|
420
|
+
db.alter_table(table_name(:visit_occurrence)) do
|
421
|
+
add_index [:person_id, :visit_start_date, :place_of_service_concept_id], :name=>:visit_occurrence_person_id_visit_start_date_place_of_servic_key, :ignore_add_index_errors=>true
|
422
|
+
add_index [:care_site_id], :name=>:visocc_carsitid, :ignore_add_index_errors=>true
|
423
|
+
add_index [:person_id], :name=>:visocc_perid, :ignore_add_index_errors=>true
|
424
|
+
add_index [:place_of_service_concept_id], :name=>:visocc_plaofserconid, :ignore_add_index_errors=>true
|
425
|
+
add_index [:visit_occurrence_id], :name=>:visocc_visoccid, :ignore_add_index_errors=>true
|
426
|
+
end
|
427
|
+
|
428
|
+
db.alter_table(table_name(:drug_cost)) do
|
429
|
+
add_index [:drug_cost_id], :name=>:drucos_drucosid, :ignore_add_index_errors=>true
|
430
|
+
add_index [:drug_exposure_id], :name=>:drucos_druexpid, :ignore_add_index_errors=>true
|
431
|
+
add_index [:payer_plan_period_id], :name=>:drucos_payplaperid, :ignore_add_index_errors=>true
|
432
|
+
end
|
433
|
+
|
434
|
+
db.alter_table(table_name(:procedure_cost)) do
|
435
|
+
add_index [:disease_class_concept_id], :name=>:procos_disclaconid, :ignore_add_index_errors=>true
|
436
|
+
add_index [:payer_plan_period_id], :name=>:procos_payplaperid, :ignore_add_index_errors=>true
|
437
|
+
add_index [:procedure_cost_id], :name=>:procos_procosid, :ignore_add_index_errors=>true
|
438
|
+
add_index [:procedure_occurrence_id], :name=>:procos_prooccid, :ignore_add_index_errors=>true
|
439
|
+
add_index [:revenue_code_concept_id], :name=>:procos_revcodconid, :ignore_add_index_errors=>true
|
440
|
+
end
|
441
|
+
end
|
53
442
|
end
|
54
443
|
end
|