lis 0.4.7 → 0.4.8
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- data/bin/lis +4 -3
- data/features/step_definitions/lis_steps.rb +4 -4
- data/lib/lis/http_interface.rb +1 -7
- data/lib/lis/transfer/application_protocol.rb +0 -5
- data/lib/lis/transfer/astm_e1394.rb +1 -1
- data/lib/lis/version.rb +1 -1
- data/lis.gemspec +1 -0
- data/test/test_astm_e1394.rb +1 -1
- data/test/test_messages.rb +23 -4
- metadata +43 -5
- checksums.yaml +0 -15
data/bin/lis
CHANGED
@@ -21,7 +21,6 @@ Main {
|
|
21
21
|
cast :uri
|
22
22
|
end
|
23
23
|
|
24
|
-
|
25
24
|
def run
|
26
25
|
$VERBOSE = true if params[:verbose].given?
|
27
26
|
portname = params[:port].value
|
@@ -36,8 +35,10 @@ Main {
|
|
36
35
|
warn "http: #{uri.to_s}"
|
37
36
|
|
38
37
|
LIS::InterfaceServer.listen(port, uri).run!
|
39
|
-
|
40
|
-
|
38
|
+
rescue Exception => e
|
39
|
+
fatal { e.message }
|
40
|
+
e.backtrace.each do |l| warn l end
|
41
|
+
raise
|
41
42
|
end
|
42
43
|
end
|
43
44
|
|
@@ -60,12 +60,12 @@ end
|
|
60
60
|
|
61
61
|
Then /^LIS should have sent test orders to client:$/ do |text|
|
62
62
|
@data = @client.read_all
|
63
|
-
@data.force_encoding("
|
64
|
-
@packets = @data.split("\002").select { |s| s =~ /^\d[A-Z]/ }
|
63
|
+
@data.force_encoding("ASCII-8BIT") if @data.respond_to?(:force_encoding)
|
64
|
+
@packets = @data.split("\002").select { |s| s =~ /^\d[A-Z]/n }
|
65
65
|
@packets.zip(text.split(/\n/)) do |actual, expected|
|
66
66
|
@called = true
|
67
|
-
rx = Regexp.new("^" + Regexp.escape(expected.strip))
|
68
|
-
assert_match(rx, actual.gsub(/\r\003
|
67
|
+
rx = Regexp.new("^" + Regexp.escape(expected.strip.force_encoding('ASCII-8BIT')), Regexp::NOENCODING)
|
68
|
+
assert_match(rx, actual.gsub(/\r\003.*$/n, "").strip)
|
69
69
|
end
|
70
70
|
assert_equal(true, @called)
|
71
71
|
end
|
data/lib/lis/http_interface.rb
CHANGED
@@ -54,13 +54,7 @@ class LIS::HTTPInterface
|
|
54
54
|
"raw" => result.raw_data
|
55
55
|
}
|
56
56
|
|
57
|
-
|
58
|
-
begin
|
59
|
-
res = HTTP.post(uri(device_name, barcode, order.universal_test_id), :body => data.to_json)
|
60
|
-
rescue Exception => e
|
61
|
-
puts "EXCEPTION"
|
62
|
-
p e
|
63
|
-
end
|
57
|
+
HTTP.post(uri(device_name, barcode, order.universal_test_id), :body => data.to_json)
|
64
58
|
end
|
65
59
|
|
66
60
|
|
data/lib/lis/version.rb
CHANGED
data/lis.gemspec
CHANGED
data/test/test_astm_e1394.rb
CHANGED
@@ -74,7 +74,7 @@ class TestPacketizedProtocol < Test::Unit::TestCase
|
|
74
74
|
end
|
75
75
|
|
76
76
|
should "propagate only packet data" do
|
77
|
-
@str = "\0023L|1\r\0033C\r\n"
|
77
|
+
@str = "\0023L|1\r\0033C\r\n".force_encoding("ASCII-8BIT")
|
78
78
|
@protocol.receive("\005")
|
79
79
|
@protocol.receive(@str)
|
80
80
|
@protocol.receive("\004")
|
data/test/test_messages.rb
CHANGED
@@ -1,10 +1,12 @@
|
|
1
|
+
# encoding: utf-8
|
2
|
+
|
1
3
|
require 'helper'
|
2
4
|
|
3
5
|
class TestMessages < Test::Unit::TestCase
|
4
6
|
|
5
7
|
context "parsing an order message" do
|
6
8
|
setup do
|
7
|
-
@str = "O|1|8780||^^^ATA|R|||||||||||||||||||B0135"
|
9
|
+
@str = "O|1|8780||^^^ATA|R|||||||||||||||||||B0135".force_encoding("ASCII-8BIT")
|
8
10
|
@message = LIS::Message::Base.from_string(@str)
|
9
11
|
end
|
10
12
|
|
@@ -24,7 +26,7 @@ class TestMessages < Test::Unit::TestCase
|
|
24
26
|
|
25
27
|
context "parsing a comment message" do
|
26
28
|
setup do
|
27
|
-
@str = "C|1|BAD_QC|"
|
29
|
+
@str = "C|1|BAD_QC|".force_encoding("ASCII-8BIT")
|
28
30
|
@message = LIS::Message::Base.from_string(@str)
|
29
31
|
end
|
30
32
|
|
@@ -33,9 +35,26 @@ class TestMessages < Test::Unit::TestCase
|
|
33
35
|
end
|
34
36
|
end
|
35
37
|
|
38
|
+
context "parsing a patient message" do
|
39
|
+
setup do
|
40
|
+
@str = "P|1|123||123|Müller^Ulrich Peter||||||||".force_encoding("ASCII-8BIT")
|
41
|
+
@message = LIS::Message::Base.from_string(@str)
|
42
|
+
end
|
43
|
+
|
44
|
+
should "have correct type" do
|
45
|
+
assert_equal LIS::Message::Patient, @message.class
|
46
|
+
assert_equal "P", @message.type_id
|
47
|
+
end
|
48
|
+
|
49
|
+
should "have correct name" do
|
50
|
+
assert_equal "Müller^Ulrich Peter".force_encoding("ASCII-8BIT"), @message.name # FIXME, this should be utf8
|
51
|
+
end
|
52
|
+
|
53
|
+
end
|
54
|
+
|
36
55
|
context "parsing a result message" do
|
37
56
|
setup do
|
38
|
-
@str = "R|1|^^^TSH|0.902|mIU/L|0.400\\0.004^4.00\\75.0|N|N|R|||20100115105636|20100115120641|B0135"
|
57
|
+
@str = "R|1|^^^TSH|0.902|mIU/L|0.400\\0.004^4.00\\75.0|N|N|R|||20100115105636|20100115120641|B0135".force_encoding("ASCII-8BIT")
|
39
58
|
@message = LIS::Message::Base.from_string(@str)
|
40
59
|
end
|
41
60
|
|
@@ -65,7 +84,7 @@ class TestMessages < Test::Unit::TestCase
|
|
65
84
|
end
|
66
85
|
|
67
86
|
should "parse empty result messages without error" do
|
68
|
-
@message = LIS::Message::Base.from_string("R|1|^^^||||||X|||||LIAISON")
|
87
|
+
@message = LIS::Message::Base.from_string("R|1|^^^||||||X|||||LIAISON".force_encoding("ASCII-8BIT"))
|
69
88
|
assert_equal LIS::Message::Result, @message.class
|
70
89
|
end
|
71
90
|
end
|
metadata
CHANGED
@@ -1,18 +1,20 @@
|
|
1
1
|
--- !ruby/object:Gem::Specification
|
2
2
|
name: lis
|
3
3
|
version: !ruby/object:Gem::Version
|
4
|
-
version: 0.4.
|
4
|
+
version: 0.4.8
|
5
|
+
prerelease:
|
5
6
|
platform: ruby
|
6
7
|
authors:
|
7
8
|
- Levin Alexander
|
8
9
|
autorequire:
|
9
10
|
bindir: bin
|
10
11
|
cert_chain: []
|
11
|
-
date: 2013-
|
12
|
+
date: 2013-04-22 00:00:00.000000000 Z
|
12
13
|
dependencies:
|
13
14
|
- !ruby/object:Gem::Dependency
|
14
15
|
name: packet_io
|
15
16
|
requirement: !ruby/object:Gem::Requirement
|
17
|
+
none: false
|
16
18
|
requirements:
|
17
19
|
- - ! '>='
|
18
20
|
- !ruby/object:Gem::Version
|
@@ -20,6 +22,7 @@ dependencies:
|
|
20
22
|
type: :runtime
|
21
23
|
prerelease: false
|
22
24
|
version_requirements: !ruby/object:Gem::Requirement
|
25
|
+
none: false
|
23
26
|
requirements:
|
24
27
|
- - ! '>='
|
25
28
|
- !ruby/object:Gem::Version
|
@@ -27,6 +30,7 @@ dependencies:
|
|
27
30
|
- !ruby/object:Gem::Dependency
|
28
31
|
name: httparty
|
29
32
|
requirement: !ruby/object:Gem::Requirement
|
33
|
+
none: false
|
30
34
|
requirements:
|
31
35
|
- - ! '>='
|
32
36
|
- !ruby/object:Gem::Version
|
@@ -34,6 +38,7 @@ dependencies:
|
|
34
38
|
type: :runtime
|
35
39
|
prerelease: false
|
36
40
|
version_requirements: !ruby/object:Gem::Requirement
|
41
|
+
none: false
|
37
42
|
requirements:
|
38
43
|
- - ! '>='
|
39
44
|
- !ruby/object:Gem::Version
|
@@ -41,6 +46,7 @@ dependencies:
|
|
41
46
|
- !ruby/object:Gem::Dependency
|
42
47
|
name: rake
|
43
48
|
requirement: !ruby/object:Gem::Requirement
|
49
|
+
none: false
|
44
50
|
requirements:
|
45
51
|
- - ! '>='
|
46
52
|
- !ruby/object:Gem::Version
|
@@ -48,6 +54,7 @@ dependencies:
|
|
48
54
|
type: :runtime
|
49
55
|
prerelease: false
|
50
56
|
version_requirements: !ruby/object:Gem::Requirement
|
57
|
+
none: false
|
51
58
|
requirements:
|
52
59
|
- - ! '>='
|
53
60
|
- !ruby/object:Gem::Version
|
@@ -55,6 +62,7 @@ dependencies:
|
|
55
62
|
- !ruby/object:Gem::Dependency
|
56
63
|
name: main
|
57
64
|
requirement: !ruby/object:Gem::Requirement
|
65
|
+
none: false
|
58
66
|
requirements:
|
59
67
|
- - ! '>='
|
60
68
|
- !ruby/object:Gem::Version
|
@@ -62,6 +70,23 @@ dependencies:
|
|
62
70
|
type: :runtime
|
63
71
|
prerelease: false
|
64
72
|
version_requirements: !ruby/object:Gem::Requirement
|
73
|
+
none: false
|
74
|
+
requirements:
|
75
|
+
- - ! '>='
|
76
|
+
- !ruby/object:Gem::Version
|
77
|
+
version: '0'
|
78
|
+
- !ruby/object:Gem::Dependency
|
79
|
+
name: json
|
80
|
+
requirement: !ruby/object:Gem::Requirement
|
81
|
+
none: false
|
82
|
+
requirements:
|
83
|
+
- - ! '>='
|
84
|
+
- !ruby/object:Gem::Version
|
85
|
+
version: '0'
|
86
|
+
type: :runtime
|
87
|
+
prerelease: false
|
88
|
+
version_requirements: !ruby/object:Gem::Requirement
|
89
|
+
none: false
|
65
90
|
requirements:
|
66
91
|
- - ! '>='
|
67
92
|
- !ruby/object:Gem::Version
|
@@ -69,6 +94,7 @@ dependencies:
|
|
69
94
|
- !ruby/object:Gem::Dependency
|
70
95
|
name: shoulda
|
71
96
|
requirement: !ruby/object:Gem::Requirement
|
97
|
+
none: false
|
72
98
|
requirements:
|
73
99
|
- - ! '>='
|
74
100
|
- !ruby/object:Gem::Version
|
@@ -76,6 +102,7 @@ dependencies:
|
|
76
102
|
type: :development
|
77
103
|
prerelease: false
|
78
104
|
version_requirements: !ruby/object:Gem::Requirement
|
105
|
+
none: false
|
79
106
|
requirements:
|
80
107
|
- - ! '>='
|
81
108
|
- !ruby/object:Gem::Version
|
@@ -83,6 +110,7 @@ dependencies:
|
|
83
110
|
- !ruby/object:Gem::Dependency
|
84
111
|
name: mocha
|
85
112
|
requirement: !ruby/object:Gem::Requirement
|
113
|
+
none: false
|
86
114
|
requirements:
|
87
115
|
- - ! '>='
|
88
116
|
- !ruby/object:Gem::Version
|
@@ -90,6 +118,7 @@ dependencies:
|
|
90
118
|
type: :development
|
91
119
|
prerelease: false
|
92
120
|
version_requirements: !ruby/object:Gem::Requirement
|
121
|
+
none: false
|
93
122
|
requirements:
|
94
123
|
- - ! '>='
|
95
124
|
- !ruby/object:Gem::Version
|
@@ -97,6 +126,7 @@ dependencies:
|
|
97
126
|
- !ruby/object:Gem::Dependency
|
98
127
|
name: yard
|
99
128
|
requirement: !ruby/object:Gem::Requirement
|
129
|
+
none: false
|
100
130
|
requirements:
|
101
131
|
- - ! '>='
|
102
132
|
- !ruby/object:Gem::Version
|
@@ -104,6 +134,7 @@ dependencies:
|
|
104
134
|
type: :development
|
105
135
|
prerelease: false
|
106
136
|
version_requirements: !ruby/object:Gem::Requirement
|
137
|
+
none: false
|
107
138
|
requirements:
|
108
139
|
- - ! '>='
|
109
140
|
- !ruby/object:Gem::Version
|
@@ -111,6 +142,7 @@ dependencies:
|
|
111
142
|
- !ruby/object:Gem::Dependency
|
112
143
|
name: cucumber
|
113
144
|
requirement: !ruby/object:Gem::Requirement
|
145
|
+
none: false
|
114
146
|
requirements:
|
115
147
|
- - ! '>='
|
116
148
|
- !ruby/object:Gem::Version
|
@@ -118,6 +150,7 @@ dependencies:
|
|
118
150
|
type: :development
|
119
151
|
prerelease: false
|
120
152
|
version_requirements: !ruby/object:Gem::Requirement
|
153
|
+
none: false
|
121
154
|
requirements:
|
122
155
|
- - ! '>='
|
123
156
|
- !ruby/object:Gem::Version
|
@@ -125,6 +158,7 @@ dependencies:
|
|
125
158
|
- !ruby/object:Gem::Dependency
|
126
159
|
name: webmock
|
127
160
|
requirement: !ruby/object:Gem::Requirement
|
161
|
+
none: false
|
128
162
|
requirements:
|
129
163
|
- - ! '>='
|
130
164
|
- !ruby/object:Gem::Version
|
@@ -132,6 +166,7 @@ dependencies:
|
|
132
166
|
type: :development
|
133
167
|
prerelease: false
|
134
168
|
version_requirements: !ruby/object:Gem::Requirement
|
169
|
+
none: false
|
135
170
|
requirements:
|
136
171
|
- - ! '>='
|
137
172
|
- !ruby/object:Gem::Version
|
@@ -139,6 +174,7 @@ dependencies:
|
|
139
174
|
- !ruby/object:Gem::Dependency
|
140
175
|
name: aruba
|
141
176
|
requirement: !ruby/object:Gem::Requirement
|
177
|
+
none: false
|
142
178
|
requirements:
|
143
179
|
- - ! '>='
|
144
180
|
- !ruby/object:Gem::Version
|
@@ -146,6 +182,7 @@ dependencies:
|
|
146
182
|
type: :development
|
147
183
|
prerelease: false
|
148
184
|
version_requirements: !ruby/object:Gem::Requirement
|
185
|
+
none: false
|
149
186
|
requirements:
|
150
187
|
- - ! '>='
|
151
188
|
- !ruby/object:Gem::Version
|
@@ -201,27 +238,28 @@ files:
|
|
201
238
|
- vendor/lis.service
|
202
239
|
homepage: http://github.com/levinalex/lis
|
203
240
|
licenses: []
|
204
|
-
metadata: {}
|
205
241
|
post_install_message:
|
206
242
|
rdoc_options:
|
207
243
|
- --charset=UTF-8
|
208
244
|
require_paths:
|
209
245
|
- lib
|
210
246
|
required_ruby_version: !ruby/object:Gem::Requirement
|
247
|
+
none: false
|
211
248
|
requirements:
|
212
249
|
- - ! '>='
|
213
250
|
- !ruby/object:Gem::Version
|
214
251
|
version: '0'
|
215
252
|
required_rubygems_version: !ruby/object:Gem::Requirement
|
253
|
+
none: false
|
216
254
|
requirements:
|
217
255
|
- - ! '>='
|
218
256
|
- !ruby/object:Gem::Version
|
219
257
|
version: '0'
|
220
258
|
requirements: []
|
221
259
|
rubyforge_project:
|
222
|
-
rubygems_version:
|
260
|
+
rubygems_version: 1.8.23
|
223
261
|
signing_key:
|
224
|
-
specification_version:
|
262
|
+
specification_version: 3
|
225
263
|
summary: LIS interface to Siemens Immulite 2000XPi or other similar analyzers
|
226
264
|
test_files:
|
227
265
|
- features/communication basics.feature
|
checksums.yaml
DELETED
@@ -1,15 +0,0 @@
|
|
1
|
-
---
|
2
|
-
!binary "U0hBMQ==":
|
3
|
-
metadata.gz: !binary |-
|
4
|
-
YzJkNjFkOTYxYWNlY2RiMzhkOGI5OThiOGMyYmQxZDFhNmFhNTBjZA==
|
5
|
-
data.tar.gz: !binary |-
|
6
|
-
OGQxMjljYWQ1ZmE4MzAzZTIyYjczOWYxNjFjNTVjZGI4ZGZmZWViNw==
|
7
|
-
!binary "U0hBNTEy":
|
8
|
-
metadata.gz: !binary |-
|
9
|
-
ZTZlM2E4ZTcwMTE4M2EwMTY3ZjZkZDg5OWI4NTQwNDRjNGRiMGZkYTY1YTYz
|
10
|
-
MGMyZWU3MzQ3ZDU3MWJlMjkwMWI4M2FmMDY2MDZhYTEzMmYzMDJkZTU3OWIz
|
11
|
-
MmYwOGEzMTk1NDFjZTE2OTJkOTI5Y2VjM2Q3MDQxMjA4NDQyMjI=
|
12
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-
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