librtree 0.9.1 → 1.0.0

data/ext/rtree/lib/node.c

@@ -0,0 +1,708 @@
+#ifdef HAVE_CONFIG_H
+#include "config.h"
+#endif
+
+#include "rtree/node.h"
+#include "rtree/branches.h"
+#include "rtree/rect.h"
+#include "rtree/error.h"
+
+#include "split.h"
+
+#include <stdbool.h>
+#include <stddef.h>
+#include <string.h>
+#include <stdlib.h>
+#include <assert.h>
+#include <errno.h>
+
+#ifdef HAVE_TGMATH_H
+#include <tgmath.h>
+#else
+#include <math.h>
+#endif
+
+/*
+  how many branches can we fit at the end of a node of the specified
+  size, typically this will be a fraction of a page size.  This does
+  not take a state_t* as argument since it is used to initialise it.
+*/
+
+size_t node_num_branch(size_t node_size, size_t branch_size)
+{
+  return (node_size - offsetof(node_t, branches)) / branch_size;
+}
+
+static branch_t* node_get_branch(const state_t *state,
+                                 const node_t *node, size_t i)
+{
+  return branches_get(state, (void*)node->branches, i);
+}
+
+int node_init(const state_t *state, node_t *node)
+{
+  node->count = 0;
+  node->level = 0;
+
+  const size_t n = state_branching_factor(state);
+
+  for (size_t i = 0 ; i < n ; i++)
+    {
+      int err = branch_init(state, node_get_branch(state, node, i));
+      if (err != RTREE_OK)
+        return err;
+    }
+
+  return RTREE_OK;
+}
+
+node_t* node_new(const state_t *state)
+{
+  node_t *node;
+
+  if ((node = malloc(state_node_size(state))) == NULL)
+    errno = ENOMEM;
+  else
+    {
+      if (node_init(state, node) == 0)
+        return node;
+
+      free(node);
+    }
+
+  return NULL;
+}
+
+/*
+  Rather than iterate over the branches, we here recurse: this is so
+  that we can do all of the work that we need to do but leave the
+  allocation in node_clone() until last, and only then call ourself.
+  In case of failure we back out with node_destroy() return error and
+  our recursive parents do the same, so cleaning up after ourselves.
+*/
+
+static int node_clone_children(const state_t *state,
+                               const node_t *src, node_t *dest,
+                               size_t i)
+{
+  if (i >= node_count(src)) return RTREE_OK;
+
+  const branch_t *src_branch;
+  if ((src_branch = node_get_branch(state, src, i)) == NULL)
+    return RTREE_ERR_GETBRANCH;
+
+  branch_t *dest_branch;
+  if ((dest_branch = node_get_branch(state, dest, i)) == NULL)
+    return RTREE_ERR_GETBRANCH;
+
+  const node_t *src_child;
+  if ((src_child = branch_get_child(src_branch)) == NULL)
+    return RTREE_ERR_GETCHILD;
+
+  node_t *dest_child;
+  if ((dest_child = node_clone(state, src_child)) == NULL)
+    return RTREE_ERR_NODECLONE;
+
+  int err = node_clone_children(state, src, dest, i + 1);
+  if (err != RTREE_OK)
+    {
+      node_destroy(state, dest_child);
+      return err;
+    }
+
+  branch_set_child(dest_branch, dest_child);
+
+  return RTREE_OK;
+}
+
+/*
+  To clone a leaf node (and its branches), we just need to copy,
+  but for internal nodes we need to replace the branches' pointers
+  to node by the pointer to its clone; so recursion.
+*/
+
+node_t* node_clone(const state_t *state, const node_t *src)
+{
+  const size_t node_size = state_node_size(state);
+  node_t *dest;
+
+  if ((dest = malloc(node_size)) == NULL)
+    {
+      errno = ENOMEM;
+      return NULL;
+    }
+
+  memcpy(dest, src, node_size);
+  if (node_level(src) > 0)
+    {
+      if (node_clone_children(state, src, dest, 0) != 0)
+        {
+          free(dest);
+          return NULL;
+        }
+    }
+
+  return dest;
+}
+
+/*
+  For the destroy, we go a bit overboard checking that everything
+  is non-NULL, this since we expect it to be used backing out on
+  failure, and that failure might be a bad alloc.
+*/
+
+void node_destroy(const state_t *state, node_t *node)
+{
+  if (node != NULL)
+    {
+      if (node_level(node) > 0)
+        {
+          for (size_t i = 0 ; i < node_count(node) ; i++)
+            {
+              branch_t *branch;
+              if ((branch = node_get_branch(state, node, i)) != NULL)
+                {
+                  node_t *child;
+                  if ((child = branch_get_child_mutable(branch)) != NULL)
+                    node_destroy(state, child);
+                }
+            }
+        }
+      free(node);
+    }
+}
+
+/*
+  Apply the function f to each branch of the specified node, even if
+  that branch is empty (i.e., has no child).  The function f should
+  return zero to indicate success, if a non-zero value is returned
+  then the iteration is aborted and that value returned.
+*/
+
+int node_branch_each(const state_t *state, const node_t *node,
+                     nbe_cb_t *f, void *arg)
+{
+  for (size_t i = 0 ; i < node_count(node) ; i++)
+    {
+      int err;
+      if ((err = f(state, node_get_branch(state, node, i), arg)) != 0)
+        return err;
+    }
+  return RTREE_OK;
+}
+
+/*
+  a bit like node_branch each, but applied to all nodes at the specified
+  level; a breadth-first iterate if you will
+*/
+
+int node_branch_each_level(const state_t *state, const node_t *node,
+                           node_level_t level, nbe_cb_t *f, void *arg)
+{
+  const node_level_t this_level = node_level(node);
+
+  if (this_level > level)
+    {
+      for (size_t i = 0 ; i < node_count(node) ; i++)
+        {
+          branch_t *branch = node_get_branch(state, node, i);
+          const node_t *child = branch_get_child(branch);
+          int err = node_branch_each_level(state, child, level, f, arg);
+          if (err != 0) return err;
+        }
+    }
+  else if (this_level == level)
+    {
+      for (size_t i = 0 ; i < node_count(node) ; i++)
+        {
+          branch_t *branch = node_get_branch(state, node, i);
+          int err = f(state, branch, arg);
+          if (err != 0) return err;
+        }
+    }
+  return RTREE_OK;
+}
+
+size_t node_bytes(const state_t *state, const node_t *node)
+{
+  if (node == NULL)
+    return 0;
+
+  if (node_level(node) == 0)
+    return state_node_size(state);
+
+  size_t bytes = state_node_size(state);
+
+  for (size_t i = 0 ; i < node_count(node) ; i++)
+    {
+      branch_t *branch = node_get_branch(state, node, i);
+      const node_t *child = branch_get_child(branch);
+      bytes += node_bytes(state, child);
+    }
+
+  return bytes;
+}
+
+/*
+  remove branch i from node, to maintain contiguousness, we copy the
+  final branch to i (we don't need to do that if it is the final branch
+  of course, indeed, since we use memcpy we shouldn't do that). Note
+  that this handles the case when there is only one branch.
+*/
+
+int node_detach_branch(const state_t *state, node_t *node, size_t i)
+{
+  branch_t *branch;
+
+  if ((i >= node_count(node)) ||
+      ((branch = node_get_branch(state, node, i)) == NULL))
+    return RTREE_ERR_GETBRANCH;
+
+  if (i + 1 != node_count(node))
+    {
+      branch_t *branch_end = node_get_branch(state, node, node_count(node) - 1);
+
+      if (branch_end == NULL)
+        return RTREE_ERR_GETBRANCH;
+
+      if (branch_copy(state, branch_end, branch) == NULL)
+        return RTREE_ERR_NOMEM;
+    }
+
+  node_count_decrement(node);
+
+  return RTREE_OK;
+}
+
+static node_t* node_split(const state_t *state, node_t *node, branch_t *branch)
+{
+  return split_node(state, node, branch);
+}
+
+/*
+  add branch to node, which may split the node: if so the new node
+  argumemnt is returned, so comparing the node argument and return
+  value is the way to detect that splitting has occured.
+*/
+
+node_t* node_add_branch(const state_t *state, node_t *node, branch_t *branch)
+{
+  if (node_count(node) < state_branching_factor(state))
+    {
+      branch_t *b;
+
+      if ((b = node_get_branch(state, node, node_count(node))) == NULL)
+        return NULL;
+
+      branch_copy(state, branch, b);
+      node_count_increment(node);
+
+      return node;
+    }
+
+  return node_split(state, node, branch);
+}
+
+/*
+  Pick a branch.  Pick the one that will need the smallest increase
+  in volume to accomodate the new (hyper-)rectangle.  This will result
+  in the least total volume for the covering rectangles in the current
+  node.  In case of a tie, pick the one which was smaller before, to
+  get the best resolution when searching.
+*/
+
+static int node_pick_branch(const state_t *state,
+                            node_t *node, const rtree_coord_t *rect,
+                            size_t *index)
+{
+  const size_t
+    dims = state_dims(state);
+  size_t
+    index_min = SIZE_MAX;
+  rtree_coord_t
+    dvol_min = INFINITY,
+    vol_min = INFINITY;
+
+  for (size_t i = 0 ; i < node_count(node) ; i++)
+    {
+      branch_t *branch;
+
+      if ((branch = node_get_branch(state, node, i)) == NULL)
+        return RTREE_ERR_GETBRANCH;
+
+      const rtree_coord_t *rect1 = branch_get_rect(branch);
+      rtree_coord_t rect2[2 * dims];
+      rect_combine(state, rect, rect1, rect2);
+
+      rtree_coord_t
+        vol1 = rect_spherical_volume(state, rect1),
+        vol2 = rect_spherical_volume(state, rect2),
+        dvol = vol2 - vol1;
+
+      if ((dvol < dvol_min) || ((dvol == dvol_min) && (vol1 < vol_min)))
+        {
+          index_min = i;
+          vol_min = vol1;
+          dvol_min = dvol;
+        }
+    }
+
+  /*
+    This can only happen if no branches are assigned in the above
+    block, on the first call of it, dvol_min == DBL_MAX, so either
+    the first case is called, or dvol == DBL_MAX, but dvol is equal
+    to vol2 - vol1, and vol1, vol2 are non-negative, so vol2 must
+    be DBL_MAX and vol1 zero, in particular vol1 < vol_min (DBL_MAX),
+    so the second condition is met.
+  */
+
+  if (index_min == SIZE_MAX)
+    return RTREE_ERR_PICKBRANCH;
+
+  *index = index_min;
+
+  return RTREE_OK;
+}
+
+int node_envelope(const state_t *state, const node_t *node,
+                  rtree_coord_t *rect)
+{
+  size_t n = node_count(node);
+
+  if (n > 0)
+    {
+      const branch_t *branch;
+
+      if ((branch = node_get_branch(state, node, 0)) == NULL)
+        return RTREE_ERR_GETBRANCH;
+      rect_copy(state, branch_get_rect(branch), rect);
+
+      for (size_t i = 1 ; i < n ; i++)
+        {
+          if ((branch = node_get_branch(state, node, i)) == NULL)
+            return RTREE_ERR_GETBRANCH;
+          rect_merge(state, branch_get_rect(branch), rect);
+        }
+    }
+
+  return RTREE_OK;
+}
+
+static node_t* node_add_rect2(const state_t *state,
+                              rtree_id_t id, const rtree_coord_t *rect, node_t *node,
+                              node_level_t level)
+{
+  const size_t rect_size = state_rect_size(state);
+
+  if (node_level(node) > level)
+    {
+      /* internal node */
+
+      size_t i;
+
+      if (node_pick_branch(state, node, rect, &i) != 0)
+        return NULL;
+
+      branch_t *picked;
+
+      if ((picked = node_get_branch(state, node, i)) == NULL)
+        return NULL;
+
+      node_t
+        *child = branch_get_child_mutable(picked),
+        *node2 = node_add_rect2(state, id, rect, child, level);
+
+      if (node2 == child)
+        {
+          /* child not split */
+
+          rtree_coord_t rect_comb[rect_size];
+          rect_combine(state, rect, branch_get_rect(picked), rect_comb);
+          branch_set_rect(state, picked, rect_comb);
+
+          return node;
+        }
+      else
+        {
+          /* child split */
+
+          rtree_coord_t rect_comb[rect_size];
+          if (node_envelope(state, child, rect_comb) != 0)
+            return NULL;
+          branch_set_rect(state, picked, rect_comb);
+
+          char branch_bytes[state_branch_size(state)];
+          branch_t *branch = (branch_t*)branch_bytes;
+          branch_init(state, branch);
+
+          branch_set_child(branch, node2);
+
+          if (node_envelope(state, node2, rect_comb) != 0)
+            return NULL;
+          branch_set_rect(state, branch, rect_comb);
+
+          node_t *new_node = node_add_branch(state, node, branch);
+
+          return new_node;
+        }
+    }
+  else if (node_level(node) == level)
+    {
+      /* leaf node */
+
+      char branch_bytes[state_branch_size(state)];
+      branch_t *branch = (branch_t*)branch_bytes;
+      branch_init(state, branch);
+
+      branch_set_id(branch, id);
+      branch_set_rect(state, branch, rect);
+
+      node_t *new_node = node_add_branch(state, node, branch);
+
+      return new_node;
+    }
+
+  return NULL;
+}
+
+/*
+  Insert the rect (array) into the node root, the root may be split
+  and the sibling is returned from the function on success.  On failure
+  NULL is returned and the root is not modified (so can be reallocated)
+*/
+
+node_t* node_add_rect(const state_t *state,
+                      rtree_id_t id, rtree_coord_t *rect, node_t *root,
+                      node_level_t level)
+{
+  const size_t dims = state_dims(state);
+
+  /*
+    dims is never zero as that would not make sense at the application
+    level, and that is enforced in state_new(), but scan-build does
+    not look that deep and thinks that it might be so errors on a length
+    zero VLA below; this assert fixes that, removing it leads to spurious
+    CI failures.
+  */
+
+  assert(dims > 0);
+
+  for (size_t i = 0 ; i < dims ; i++)
+    {
+      if (rect[i] > rect[dims + i])
+        {
+          errno = EINVAL;
+          return NULL;
+        }
+    }
+
+  node_t *sibling;
+
+  if ((sibling = node_add_rect2(state, id, rect, root, level)) == NULL)
+    return NULL;
+
+  if (sibling == root)
+    return root;
+
+  node_t *new_root;
+
+  if ((new_root = node_new(state)) != NULL)
+    {
+      node_set_level(new_root, node_level(root) + 1);
+
+      char branch_bytes[state_branch_size(state)];
+      branch_t *branch = (branch_t*)branch_bytes;
+      branch_init(state, branch);
+
+      rtree_coord_t envelope[2 * dims];
+
+      if (node_envelope(state, root, envelope) == 0)
+        {
+          branch_set_child(branch, root);
+          branch_set_rect(state, branch, envelope);
+
+          /*
+            node_add_branch() may return a node different to the input
+            node if the node splits -- that shouldn't happen, since we
+            have just created this node, so if it does then we error
+            out (making a half-hearted effort to clean up).
+          */
+
+          node_t *n = node_add_branch(state, new_root, branch);
+
+          if (n != new_root)
+            node_destroy(state, n);
+          else
+            {
+              if (node_envelope(state, sibling, envelope) == 0)
+                {
+                  branch_set_child(branch, sibling);
+                  branch_set_rect(state, branch, envelope);
+                  node_add_branch(state, new_root, branch);
+
+                  return new_root;
+                }
+            }
+        }
+
+      node_destroy(state, new_root);
+    }
+
+  node_destroy(state, sibling);
+
+  return NULL;
+}
+
+int node_update(const state_t *state, const node_t *node,
+                rtree_update_t *f, void *context)
+{
+  node_level_t level = node_level(node);
+
+  if (level > 0)
+    {
+      const size_t dims = state_dims(state);
+
+      for (size_t i = 0 ; i < node_count(node) ; i++)
+        {
+          branch_t *branch = node_get_branch(state, node, i);
+          if (branch == NULL) return RTREE_ERR_GETBRANCH;
+
+          const node_t *child = branch_get_child(branch);
+          if (child == NULL) return RTREE_ERR_GETCHILD;
+
+          /*
+            Note, in the case that node_update returns RTREE_ERR_USER,
+            we could calculate and assign the envelope, and then the
+            search index should be correct. but it seems unlikely that
+            this would ever be useful, since you're then be indexing a
+            half-updated set of rectangles.  So we leave that until the
+            need arises.
+          */
+
+          int err;
+
+          err = node_update(state, child, f, context);
+          if (err != RTREE_OK) return err;
+
+          rtree_coord_t envelope[2 * dims];
+          err = node_envelope(state, child, envelope);
+          if (err != RTREE_OK) return err;
+
+          branch_set_rect(state, branch, envelope);
+        }
+    }
+  else
+    {
+      for (size_t i = 0 ; i < node_count(node) ; i++)
+        {
+          branch_t *branch = node_get_branch(state, node, i);
+          if (branch == NULL) return RTREE_ERR_GETBRANCH;
+
+          rtree_coord_t *rect = branch_get_rect_mutable(branch);
+          rtree_id_t id = branch_get_id(branch);
+
+          if (f(id, rect, context) != 0) return RTREE_ERR_USER;
+        }
+    }
+
+  return RTREE_OK;
+}
+
+/*
+  Height is the maximal number of branches from the root to a leaf,
+  or zero if the tree is empty.  If there have been no branch
+  deletions, then this is the same as the level of the root plus one,
+  but if there have been deletions then this is not the case.  This
+  function iterates over all internal nodes to calculate the height,
+  this could probably be done more efficiently by holding some state
+  on branch deletions, but we don't expect this to be called that
+  often (and it's still pretty quick).
+*/
+
+node_level_t node_height(const state_t *state, const node_t *node)
+{
+  node_count_t count;
+
+  if ((count = node_count(node)) == 0)
+    return 0;
+
+  if (node_level(node) == 0)
+    return 1;
+
+  node_level_t child_max_height = 0;
+
+  for (size_t i = 0 ; i < count ; i++)
+    {
+      const branch_t *branch = node_get_branch(state, node, i);
+      const node_t *child = branch_get_child(branch);
+      node_level_t child_height = node_height(state, child);
+
+      if (child_height > child_max_height)
+        child_max_height = child_height;
+    }
+
+  if (child_max_height == 0)
+    return 0;
+  else
+    return child_max_height + 1;
+}
+
+/*
+  it is assumed that the state is identical for a and b, i.e., that
+  state_identical() is true (so we don't need to pass the state for
+  both nodes).
+*/
+
+bool node_identical(const state_t *state, const node_t *a, const node_t *b)
+{
+  if (a && b)
+    {
+      if ((node_level(a) != node_level(b)) || (node_count(a) != node_count(b)))
+        return false;
+
+      node_level_t level = node_level(a);
+      node_count_t count = node_count(a);
+
+      for (size_t i = 0 ; i < count ; i++)
+        {
+          const branch_t
+            *branch_a = node_get_branch(state, a, i),
+            *branch_b = node_get_branch(state, b, i);
+          const rtree_coord_t
+            *rect_a = branch_get_rect(branch_a),
+            *rect_b = branch_get_rect(branch_b);
+
+          if (! rect_identical(state, rect_a, rect_b))
+            return false;
+
+          if (level > 0)
+            {
+              const node_t
+                *child_a = branch_get_child(branch_a),
+                *child_b = branch_get_child(branch_b);
+
+              if (! node_identical(state, child_a, child_b))
+                return false;
+            }
+          else
+            {
+              rtree_id_t
+                id_a = branch_get_id(branch_a),
+                id_b = branch_get_id(branch_b);
+
+              if (id_a != id_b)
+                return false;
+            }
+        }
+      return true;
+    }
+
+  return ! (a || b);
+}
+
+extern node_count_t node_count(const node_t*);
+extern void node_count_increment(node_t*);
+extern void node_count_decrement(node_t*);
+extern node_level_t node_level(const node_t*);
+extern void node_set_level(node_t*, node_level_t);
+extern void* node_get_branches(node_t*);

data/ext/rtree/lib/package.c

@@ -0,0 +1,11 @@
+/*
+  Generated from package.c.in, do not edit (but do not delete,
+  this file is checked into version control)
+*/
+
+#include "rtree/package.h"
+
+const char *rtree_package_version = "1.1.3";
+const char *rtree_package_name = "librtree";
+const char *rtree_package_url = "https://gitlab.com/jjg/librtree";
+const char *rtree_package_bugreport = "j.j.green@gmx.co.uk";