libmf 0.1.3 → 0.2.0
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- checksums.yaml +4 -4
- data/CHANGELOG.md +11 -4
- data/LICENSE.txt +25 -18
- data/README.md +40 -3
- data/lib/libmf.rb +7 -6
- data/lib/libmf/ffi.rb +2 -6
- data/lib/libmf/model.rb +37 -19
- data/lib/libmf/version.rb +1 -1
- data/vendor/{libmf/COPYRIGHT → COPYRIGHT} +0 -0
- data/vendor/{libmf/demo → demo}/real_matrix.te.txt +0 -0
- data/vendor/{libmf/demo → demo}/real_matrix.tr.txt +0 -0
- data/vendor/libmf.dylib +0 -0
- data/vendor/libmf.so +0 -0
- data/vendor/mf.dll +0 -0
- metadata +27 -30
- data/ext/libmf/extconf.rb +0 -18
- data/lib/libmf.bundle +0 -0
- data/vendor/libmf/Makefile +0 -34
- data/vendor/libmf/Makefile.win +0 -36
- data/vendor/libmf/README +0 -637
- data/vendor/libmf/demo/all_one_matrix.te.txt +0 -1382
- data/vendor/libmf/demo/all_one_matrix.tr.txt +0 -5172
- data/vendor/libmf/demo/binary_matrix.te.txt +0 -1312
- data/vendor/libmf/demo/binary_matrix.tr.txt +0 -4937
- data/vendor/libmf/demo/demo.bat +0 -40
- data/vendor/libmf/demo/demo.sh +0 -58
- data/vendor/libmf/mf-predict.cpp +0 -207
- data/vendor/libmf/mf-train.cpp +0 -378
- data/vendor/libmf/mf.cpp +0 -4683
- data/vendor/libmf/mf.def +0 -21
- data/vendor/libmf/mf.h +0 -130
- data/vendor/libmf/windows/mf-predict.exe +0 -0
- data/vendor/libmf/windows/mf-train.exe +0 -0
- data/vendor/libmf/windows/mf.dll +0 -0
checksums.yaml
CHANGED
@@ -1,7 +1,7 @@
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---
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SHA256:
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metadata.gz:
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data.tar.gz:
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metadata.gz: 58c3cf0afbb36ff976cb7641104f363795499023ce04c859beedf17bccaaffa1
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data.tar.gz: '09a6b70c631ae252b24bd83c3cbb08ff3a9468d6b174b0255cf8223aaf77ea4d'
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SHA512:
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metadata.gz:
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data.tar.gz:
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metadata.gz: ad1aad8cdb571fd5fa99aa121a67cf172f6686b793a89a82b555005116378a07772c6675e20308f8575419d618edfa368c0adef738da06847f0c06e860ab650e
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data.tar.gz: 87f4260c2bccc5f5da8c44497d656fd367467b1d403de6584d802700359f455e55e7f9cbf71db515a5252012e27ace4cf52f5e284528b05a1a6b0be72c693a0d
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data/CHANGELOG.md
CHANGED
@@ -1,16 +1,23 @@
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1
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-
## 0.
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## 0.2.0 (2020-03-26)
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- Changed to BSD 3-Clause license to match LIBMF
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- Added support for reading data directly from files
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- Added `format: :numo` option to `p_factors` and `q_factors`
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- Improved performance of loading data by 5x
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## 0.1.3 (2019-11-07)
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- Made parameter names more Ruby-like
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11
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- No need to set `do_nmf` with generalized KL-divergence
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## 0.1.2
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## 0.1.2 (2019-11-06)
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8
15
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- Fixed bug in `p_factors` and `q_factors` methods
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## 0.1.1
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## 0.1.1 (2019-11-05)
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- Fixed errors on Linux and Windows
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## 0.1.0
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## 0.1.0 (2019-11-04)
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- First release
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data/LICENSE.txt
CHANGED
@@ -1,22 +1,29 @@
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-
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BSD 3-Clause License
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-
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Copyright (c) 2019-2020, Andrew Kane
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All rights reserved.
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"Software"), to deal in the Software without restriction, including
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without limitation the rights to use, copy, modify, merge, publish,
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distribute, sublicense, and/or sell copies of the Software, and to
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permit persons to whom the Software is furnished to do so, subject to
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-
the following conditions:
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Redistribution and use in source and binary forms, with or without
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modification, are permitted provided that the following conditions are met:
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-
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1. Redistributions of source code must retain the above copyright notice, this
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list of conditions and the following disclaimer.
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2. Redistributions in binary form must reproduce the above copyright notice,
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this list of conditions and the following disclaimer in the documentation
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and/or other materials provided with the distribution.
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3. Neither the name of the copyright holder nor the names of its
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contributors may be used to endorse or promote products derived from
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this software without specific prior written permission.
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THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
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FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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data/README.md
CHANGED
@@ -2,7 +2,9 @@
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[LIBMF](https://github.com/cjlin1/libmf) - large-scale sparse matrix factorization - for Ruby
|
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4
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[
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Check out [Disco](https://github.com/ankane/disco) for higher-level collaborative filtering
|
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[![Build Status](https://travis-ci.org/ankane/libmf.svg?branch=master)](https://travis-ci.org/ankane/libmf) [![Build status](https://ci.appveyor.com/api/projects/status/92fbip1bd8sjd2tj/branch/master?svg=true)](https://ci.appveyor.com/project/ankane/libmf/branch/master)
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9
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## Installation
|
8
10
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@@ -96,8 +98,7 @@ Libmf::Model.new(
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96
98
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alpha: 0.1, # importance of negative entries
|
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c: 0.0001, # desired value of negative entries
|
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nmf: false, # perform non-negative MF (NMF)
|
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-
quiet: false
|
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-
copy_data: true # copy data in training procedure
|
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quiet: false # no outputs to stdout
|
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)
|
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103
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```
|
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104
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@@ -121,6 +122,32 @@ For one-class matrix factorization
|
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- 11 - column-oriented pair-wise logarithmic loss
|
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- 12 - squared error (L2-norm)
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## Performance
|
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|
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For performance, read data directly from files
|
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|
129
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+
```ruby
|
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model.fit("train.txt", eval_set: "validate.txt")
|
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model.cv("train.txt")
|
132
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+
```
|
133
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|
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Data should be in the format `row_index column_index value`:
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```txt
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0 0 5.0
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0 2 3.5
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1 1 4.0
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```
|
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|
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## Numo
|
143
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|
144
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Get latent factors as Numo arrays
|
145
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+
|
146
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```ruby
|
147
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model.p_factors(format: :numo)
|
148
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model.q_factors(format: :numo)
|
149
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+
```
|
150
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+
|
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151
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## Resources
|
125
152
|
|
126
153
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- [LIBMF: A Library for Parallel Matrix Factorization in Shared-memory Systems](https://www.csie.ntu.edu.tw/~cjlin/papers/libmf/libmf_open_source.pdf)
|
@@ -137,3 +164,13 @@ Everyone is encouraged to help improve this project. Here are a few ways you can
|
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164
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- Fix bugs and [submit pull requests](https://github.com/ankane/libmf/pulls)
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- Write, clarify, or fix documentation
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- Suggest or add new features
|
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+
|
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To get started with development:
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|
170
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+
```sh
|
171
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git clone --recursive https://github.com/ankane/libmf.git
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cd libmf
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bundle install
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bundle exec rake vendor:all
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bundle exec rake test
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```
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data/lib/libmf.rb
CHANGED
@@ -11,15 +11,16 @@ module Libmf
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11
11
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class << self
|
12
12
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attr_accessor :ffi_lib
|
13
13
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end
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-
|
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if
|
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-
"
|
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-
elsif ::
|
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-
"libmf.
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lib_name =
|
15
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if Gem.win_platform?
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"mf.dll"
|
17
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+
elsif RbConfig::CONFIG["host_os"] =~ /darwin/i
|
18
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"libmf.dylib"
|
19
19
|
else
|
20
20
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"libmf.so"
|
21
21
|
end
|
22
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-
|
22
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+
vendor_lib = File.expand_path("../vendor/#{lib_name}", __dir__)
|
23
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+
self.ffi_lib = [vendor_lib]
|
23
24
|
|
24
25
|
# friendlier error message
|
25
26
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autoload :FFI, "libmf/ffi"
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data/lib/libmf/ffi.rb
CHANGED
@@ -2,12 +2,7 @@ module Libmf
|
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2
2
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module FFI
|
3
3
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extend ::FFI::Library
|
4
4
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5
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-
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ffi_lib Libmf.ffi_lib
|
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-
rescue LoadError => e
|
8
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-
raise e if ENV["LIBMF_DEBUG"]
|
9
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-
raise LoadError, "Could not find LIBMF"
|
10
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-
end
|
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ffi_lib Libmf.ffi_lib
|
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6
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|
12
7
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class Node < ::FFI::Struct
|
13
8
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layout :u, :int,
|
@@ -51,6 +46,7 @@ module Libmf
|
|
51
46
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end
|
52
47
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|
53
48
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attach_function :mf_get_default_param, [], Parameter.by_value
|
49
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+
attach_function :mf_read_problem, [:string], Problem.by_value
|
54
50
|
attach_function :mf_save_model, [Model.by_ref, :string], :int
|
55
51
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attach_function :mf_load_model, [:string], Model.by_ref
|
56
52
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attach_function :mf_destroy_model, [Model.by_ref], :void
|
data/lib/libmf/model.rb
CHANGED
@@ -51,16 +51,27 @@ module Libmf
|
|
51
51
|
model[:b]
|
52
52
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end
|
53
53
|
|
54
|
-
def p_factors
|
55
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-
|
54
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+
def p_factors(format: nil)
|
55
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+
_factors(model[:p], rows, format)
|
56
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end
|
57
57
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|
58
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-
def q_factors
|
59
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-
|
58
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def q_factors(format: nil)
|
59
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+
_factors(model[:q], columns, format)
|
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60
|
end
|
61
61
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|
62
62
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private
|
63
63
|
|
64
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+
def _factors(ptr, n, format)
|
65
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+
case format
|
66
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+
when :numo
|
67
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+
Numo::SFloat.from_string(ptr.read_bytes(n * factors * 4)).reshape(n, factors)
|
68
|
+
when nil
|
69
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+
ptr.read_array_of_float(n * factors).each_slice(factors).to_a
|
70
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+
else
|
71
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+
raise ArgumentError, "Invalid format"
|
72
|
+
end
|
73
|
+
end
|
74
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+
|
64
75
|
def model
|
65
76
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raise Error, "Not fit" unless @model
|
66
77
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@model
|
@@ -71,6 +82,7 @@ module Libmf
|
|
71
82
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options = @options.dup
|
72
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# silence insufficient blocks warning with default params
|
73
84
|
options[:bins] ||= 25 unless options[:nr_bins]
|
85
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+
options[:copy_data] = false unless options.key?(:copy_data)
|
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86
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options_map = {
|
75
87
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:loss => :fun,
|
76
88
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:factors => :k,
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@@ -90,31 +102,37 @@ module Libmf
|
|
90
102
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end
|
91
103
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|
92
104
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def create_problem(data)
|
105
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+
if data.is_a?(String)
|
106
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+
# need to expand path so it's absolute
|
107
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return FFI.mf_read_problem(File.expand_path(data))
|
108
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+
end
|
109
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+
|
93
110
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raise Error, "No data" if data.empty?
|
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111
|
|
95
|
-
|
96
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-
|
97
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-
|
98
|
-
|
99
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-
|
100
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-
|
101
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-
n[:r] = row[2]
|
102
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-
nodes << n
|
112
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+
# TODO do in C for better performance
|
113
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+
# can use FIX2INT() and RFLOAT_VALUE() instead of pack
|
114
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+
buffer = String.new
|
115
|
+
data.each do |row|
|
116
|
+
row[0, 2].pack("i*".freeze, buffer: buffer)
|
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+
row[2, 1].pack("f".freeze, buffer: buffer)
|
103
118
|
end
|
104
119
|
|
105
|
-
|
106
|
-
|
120
|
+
r = ::FFI::MemoryPointer.new(FFI::Node, data.size)
|
121
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+
r.write_bytes(buffer)
|
122
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+
|
123
|
+
# double check size is what we expect
|
124
|
+
# FFI will throw an error above if too long
|
125
|
+
raise Error, "Bad buffer size" if r.size != buffer.bytesize
|
126
|
+
|
127
|
+
m = data.max_by { |r| r[0] }[0] + 1
|
128
|
+
n = data.max_by { |r| r[1] }[1] + 1
|
107
129
|
|
108
130
|
prob = FFI::Problem.new
|
109
131
|
prob[:m] = m
|
110
132
|
prob[:n] = n
|
111
|
-
prob[:nnz] =
|
133
|
+
prob[:nnz] = data.size
|
112
134
|
prob[:r] = r
|
113
135
|
prob
|
114
136
|
end
|
115
|
-
|
116
|
-
def reshape(arr, factors)
|
117
|
-
arr.each_slice(factors).to_a
|
118
|
-
end
|
119
137
|
end
|
120
138
|
end
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data/lib/libmf/version.rb
CHANGED
File without changes
|
File without changes
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File without changes
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data/vendor/libmf.dylib
ADDED
Binary file
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data/vendor/libmf.so
ADDED
Binary file
|
data/vendor/mf.dll
ADDED
Binary file
|
metadata
CHANGED
@@ -1,14 +1,14 @@
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--- !ruby/object:Gem::Specification
|
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name: libmf
|
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3
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version: !ruby/object:Gem::Version
|
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|
-
version: 0.
|
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version: 0.2.0
|
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5
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platform: ruby
|
6
6
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authors:
|
7
7
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- Andrew Kane
|
8
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autorequire:
|
9
9
|
bindir: bin
|
10
10
|
cert_chain: []
|
11
|
-
date:
|
11
|
+
date: 2020-03-26 00:00:00.000000000 Z
|
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|
dependencies:
|
13
13
|
- !ruby/object:Gem::Dependency
|
14
14
|
name: ffi
|
@@ -67,7 +67,21 @@ dependencies:
|
|
67
67
|
- !ruby/object:Gem::Version
|
68
68
|
version: '5'
|
69
69
|
- !ruby/object:Gem::Dependency
|
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|
-
name:
|
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+
name: benchmark-ips
|
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|
+
requirement: !ruby/object:Gem::Requirement
|
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|
+
requirements:
|
73
|
+
- - ">="
|
74
|
+
- !ruby/object:Gem::Version
|
75
|
+
version: '0'
|
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|
+
type: :development
|
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|
+
prerelease: false
|
78
|
+
version_requirements: !ruby/object:Gem::Requirement
|
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+
requirements:
|
80
|
+
- - ">="
|
81
|
+
- !ruby/object:Gem::Version
|
82
|
+
version: '0'
|
83
|
+
- !ruby/object:Gem::Dependency
|
84
|
+
name: numo-narray
|
71
85
|
requirement: !ruby/object:Gem::Requirement
|
72
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|
requirements:
|
73
87
|
- - ">="
|
@@ -83,42 +97,25 @@ dependencies:
|
|
83
97
|
description:
|
84
98
|
email: andrew@chartkick.com
|
85
99
|
executables: []
|
86
|
-
extensions:
|
87
|
-
- ext/libmf/extconf.rb
|
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|
+
extensions: []
|
88
101
|
extra_rdoc_files: []
|
89
102
|
files:
|
90
103
|
- CHANGELOG.md
|
91
104
|
- LICENSE.txt
|
92
105
|
- README.md
|
93
|
-
- ext/libmf/extconf.rb
|
94
|
-
- lib/libmf.bundle
|
95
106
|
- lib/libmf.rb
|
96
107
|
- lib/libmf/ffi.rb
|
97
108
|
- lib/libmf/model.rb
|
98
109
|
- lib/libmf/version.rb
|
99
|
-
- vendor/
|
100
|
-
- vendor/
|
101
|
-
- vendor/
|
102
|
-
- vendor/libmf
|
103
|
-
- vendor/libmf
|
104
|
-
- vendor/
|
105
|
-
- vendor/libmf/demo/binary_matrix.te.txt
|
106
|
-
- vendor/libmf/demo/binary_matrix.tr.txt
|
107
|
-
- vendor/libmf/demo/demo.bat
|
108
|
-
- vendor/libmf/demo/demo.sh
|
109
|
-
- vendor/libmf/demo/real_matrix.te.txt
|
110
|
-
- vendor/libmf/demo/real_matrix.tr.txt
|
111
|
-
- vendor/libmf/mf-predict.cpp
|
112
|
-
- vendor/libmf/mf-train.cpp
|
113
|
-
- vendor/libmf/mf.cpp
|
114
|
-
- vendor/libmf/mf.def
|
115
|
-
- vendor/libmf/mf.h
|
116
|
-
- vendor/libmf/windows/mf-predict.exe
|
117
|
-
- vendor/libmf/windows/mf-train.exe
|
118
|
-
- vendor/libmf/windows/mf.dll
|
110
|
+
- vendor/COPYRIGHT
|
111
|
+
- vendor/demo/real_matrix.te.txt
|
112
|
+
- vendor/demo/real_matrix.tr.txt
|
113
|
+
- vendor/libmf.dylib
|
114
|
+
- vendor/libmf.so
|
115
|
+
- vendor/mf.dll
|
119
116
|
homepage: https://github.com/ankane/libmf
|
120
117
|
licenses:
|
121
|
-
-
|
118
|
+
- BSD-3-Clause
|
122
119
|
metadata: {}
|
123
120
|
post_install_message:
|
124
121
|
rdoc_options: []
|
@@ -135,8 +132,8 @@ required_rubygems_version: !ruby/object:Gem::Requirement
|
|
135
132
|
- !ruby/object:Gem::Version
|
136
133
|
version: '0'
|
137
134
|
requirements: []
|
138
|
-
rubygems_version: 3.
|
135
|
+
rubygems_version: 3.1.2
|
139
136
|
signing_key:
|
140
137
|
specification_version: 4
|
141
|
-
summary:
|
138
|
+
summary: Large-scale sparse matrix factorization for Ruby
|
142
139
|
test_files: []
|
data/ext/libmf/extconf.rb
DELETED
@@ -1,18 +0,0 @@
|
|
1
|
-
require "mkmf"
|
2
|
-
|
3
|
-
arch = RbConfig::CONFIG["arch"]
|
4
|
-
case arch
|
5
|
-
when /mingw/
|
6
|
-
File.write("Makefile", dummy_makefile("libmf").join)
|
7
|
-
else
|
8
|
-
abort "Missing stdc++" unless have_library("stdc++")
|
9
|
-
$CXXFLAGS << " -std=c++11"
|
10
|
-
|
11
|
-
# TODO
|
12
|
-
# if have_library("libomp")
|
13
|
-
# end
|
14
|
-
|
15
|
-
$objs = ["mf.o"]
|
16
|
-
vendor_path = File.expand_path("../../vendor/libmf", __dir__)
|
17
|
-
create_makefile("libmf", vendor_path)
|
18
|
-
end
|
data/lib/libmf.bundle
DELETED
Binary file
|
data/vendor/libmf/Makefile
DELETED
@@ -1,34 +0,0 @@
|
|
1
|
-
CXX = g++
|
2
|
-
CXXFLAGS = -Wall -O3 -pthread -std=c++0x -march=native
|
3
|
-
OMPFLAG = -fopenmp
|
4
|
-
SHVER = 2
|
5
|
-
|
6
|
-
# run `make clean all' if you change the following flags.
|
7
|
-
|
8
|
-
# comment the following flag if you want to disable SSE or enable AVX
|
9
|
-
DFLAG = -DUSESSE
|
10
|
-
|
11
|
-
# uncomment the following flags if you want to use AVX
|
12
|
-
#DFLAG = -DUSEAVX
|
13
|
-
#CXXFLAGS += -mavx
|
14
|
-
|
15
|
-
# uncomment the following flags if you do not want to use OpenMP
|
16
|
-
DFLAG += -DUSEOMP
|
17
|
-
CXXFLAGS += $(OMPFLAG)
|
18
|
-
|
19
|
-
all: mf-train mf-predict
|
20
|
-
|
21
|
-
lib:
|
22
|
-
$(CXX) -shared -Wl,-soname,libmf.so.$(SHVER) -o libmf.so.$(SHVER) mf.o
|
23
|
-
|
24
|
-
mf-train: mf-train.cpp mf.o
|
25
|
-
$(CXX) $(CXXFLAGS) $(DFLAG) -o $@ $^
|
26
|
-
|
27
|
-
mf-predict: mf-predict.cpp mf.o
|
28
|
-
$(CXX) $(CXXFLAGS) $(DFLAG) -o $@ $^
|
29
|
-
|
30
|
-
mf.o: mf.cpp mf.h
|
31
|
-
$(CXX) $(CXXFLAGS) $(DFLAG) -c -fPIC -o $@ $<
|
32
|
-
|
33
|
-
clean:
|
34
|
-
rm -f mf-train mf-predict mf.o libmf.so.$(SHVER)
|