libis-workflow 2.0.25 → 2.0.28
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- checksums.yaml +4 -4
- data/.coveralls.yml +1 -1
- data/.gitignore +36 -36
- data/.travis.yml +32 -32
- data/Gemfile +4 -4
- data/LICENSE +20 -20
- data/README.md +380 -380
- data/Rakefile +6 -6
- data/lib/libis/exceptions.rb +6 -6
- data/lib/libis/workflow.rb +41 -41
- data/lib/libis/workflow/action.rb +24 -24
- data/lib/libis/workflow/base/dir_item.rb +13 -13
- data/lib/libis/workflow/base/file_item.rb +80 -80
- data/lib/libis/workflow/base/job.rb +83 -83
- data/lib/libis/workflow/base/logging.rb +66 -66
- data/lib/libis/workflow/base/run.rb +97 -95
- data/lib/libis/workflow/base/work_item.rb +173 -173
- data/lib/libis/workflow/base/workflow.rb +149 -149
- data/lib/libis/workflow/config.rb +22 -22
- data/lib/libis/workflow/dir_item.rb +10 -10
- data/lib/libis/workflow/file_item.rb +15 -15
- data/lib/libis/workflow/job.rb +28 -28
- data/lib/libis/workflow/message_registry.rb +30 -30
- data/lib/libis/workflow/run.rb +34 -34
- data/lib/libis/workflow/status.rb +133 -133
- data/lib/libis/workflow/task.rb +318 -316
- data/lib/libis/workflow/task_group.rb +72 -71
- data/lib/libis/workflow/task_runner.rb +34 -34
- data/lib/libis/workflow/version.rb +5 -5
- data/lib/libis/workflow/work_item.rb +37 -37
- data/lib/libis/workflow/worker.rb +42 -42
- data/lib/libis/workflow/workflow.rb +20 -20
- data/libis-workflow.gemspec +38 -38
- data/spec/items.rb +2 -2
- data/spec/items/test_dir_item.rb +13 -13
- data/spec/items/test_file_item.rb +16 -16
- data/spec/items/test_run.rb +8 -8
- data/spec/spec_helper.rb +8 -8
- data/spec/task_spec.rb +15 -15
- data/spec/tasks/camelize_name.rb +12 -12
- data/spec/tasks/checksum_tester.rb +32 -32
- data/spec/tasks/collect_files.rb +47 -47
- data/spec/workflow_spec.rb +154 -154
- metadata +3 -3
@@ -1,67 +1,67 @@
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module Libis
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module Workflow
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module Base
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module Logging
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# Add a structured message to the log history. The message text can be submitted as an integer or text. If an
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# integer is submitted, it will be used to look up the text in the MessageRegistry. The message text will be
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# passed to the % operator with the args parameter. If that failes (e.g. because the format string is not correct)
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# the args value is appended to the message.
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#
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# @param [Symbol] severity
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# @param [Hash] msg should contain message text as :id or :text and the hierarchical name of the task as :task
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# @param [Array] args string format values
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def log_message(severity, msg, *args)
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# Prepare info from msg struct for use with string substitution
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message_id, message_text = if msg[:id]
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[msg[:id], MessageRegistry.instance.get_message(msg[:id])]
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elsif msg[:text]
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[0, msg[:text]]
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else
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[0, '']
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end
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task = msg[:task] || ''
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message_text = (message_text % args rescue "#{message_text} - #{args}")
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run_id = self.get_run.id rescue nil
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self.add_log severity: severity, id: message_id.to_i, text: message_text, task: task, run_id: run_id
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end
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# Helper function for the WorkItems to add a log entry to the log_history.
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#
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# The supplied message structure is expected to contain the following fields:
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# - :severity : ::Logger::Severity value
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# - :id : optional message id
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# - :text : message text
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# - :task : list of tasks names (task hierarchy) that submits the message
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#
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# @param [Hash] message
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def add_log(message = {})
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msg = message_struct(message)
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add_log_entry(msg)
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self.save!
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end
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def <=(message = {})
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self.add_log(message)
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end
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protected
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# create and return a proper message structure
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# @param [Hash] opts
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def message_struct(opts = {})
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opts.reverse_merge!(severity: :info, code: nil, text: '')
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{
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severity: ::Logging::levelify(opts[:severity]).upcase,
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task: opts[:task],
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code: opts[:code],
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message: opts[:text]
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}.cleanup
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end
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end
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end
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end
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module Libis
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module Workflow
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module Base
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module Logging
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# Add a structured message to the log history. The message text can be submitted as an integer or text. If an
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# integer is submitted, it will be used to look up the text in the MessageRegistry. The message text will be
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# passed to the % operator with the args parameter. If that failes (e.g. because the format string is not correct)
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# the args value is appended to the message.
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#
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# @param [Symbol] severity
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# @param [Hash] msg should contain message text as :id or :text and the hierarchical name of the task as :task
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# @param [Array] args string format values
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def log_message(severity, msg, *args)
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# Prepare info from msg struct for use with string substitution
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message_id, message_text = if msg[:id]
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[msg[:id], MessageRegistry.instance.get_message(msg[:id])]
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elsif msg[:text]
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[0, msg[:text]]
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else
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[0, '']
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end
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task = msg[:task] || ''
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message_text = (message_text % args rescue "#{message_text} - #{args}")
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run_id = self.get_run.id rescue nil
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self.add_log severity: severity, id: message_id.to_i, text: message_text, task: task, run_id: run_id
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end
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# Helper function for the WorkItems to add a log entry to the log_history.
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#
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# The supplied message structure is expected to contain the following fields:
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# - :severity : ::Logger::Severity value
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# - :id : optional message id
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# - :text : message text
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# - :task : list of tasks names (task hierarchy) that submits the message
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#
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# @param [Hash] message
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def add_log(message = {})
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msg = message_struct(message)
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add_log_entry(msg)
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self.save!
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end
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def <=(message = {})
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self.add_log(message)
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end
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protected
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# create and return a proper message structure
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# @param [Hash] opts
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def message_struct(opts = {})
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opts.reverse_merge!(severity: :info, code: nil, text: '')
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{
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severity: ::Logging::levelify(opts[:severity]).upcase,
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task: opts[:task],
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code: opts[:code],
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message: opts[:text]
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}.cleanup
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end
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end
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end
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end
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end
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@@ -1,95 +1,97 @@
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require 'fileutils'
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require 'libis/workflow/base/work_item'
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require 'libis/workflow/task_runner'
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module Libis
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module Workflow
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module Base
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# Base module for all workflow runs. It is created by an associated workflow when the workflow is executed.
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#
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# This module lacks the implementation for the data attributes. It functions as an interface that describes the
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# common functionality regardless of the storage implementation. These attributes require some implementation:
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#
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# - start_date: [Time] the timestamp of the execution of the run
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# - job: [Object] a reference to the Job this Run belongs to
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# - id: [String] (Optional) a unique run number
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#
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# Note that ::Libis::Workflow::Base::WorkItem is a parent module and therefore requires implementation of the
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# attributes of that module too.
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#
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# A simple in-memory implementation can be found in ::Libis::Workflow::Run
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module Run
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include ::Libis::Workflow::Base::WorkItem
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attr_accessor :tasks, :action
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def work_dir
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# noinspection RubyResolve
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dir = File.join(Libis::Workflow::Config.workdir, self.name)
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FileUtils.mkpath dir unless Dir.exist?(dir)
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dir
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end
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def name
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self.job.run_name(self.start_date)
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end
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def names
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Array.new
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end
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def namepath
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self.name
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end
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def workflow
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self.job.workflow
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end
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def logger
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self.properties['logger'] || self.job.logger rescue ::Libis::Workflow::Config.logger
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end
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# Execute the workflow.
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#
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# The action parameter defines how the execution of the tasks will behave:
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# - With the default :run action each task will be executed regardsless how the task performed on the item
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# previously.
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# - When using the :retry action a task will not perform on an item if it was successful the last time. This
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# allows you to retry a run when an temporary error (e.g. asynchronous wait or halt) occured.
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#
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# @param [Symbol] action the type of action to take during this run. :run or :retry
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def run(action = :run)
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self.action = action
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self.
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end
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require 'fileutils'
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require 'libis/workflow/base/work_item'
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require 'libis/workflow/task_runner'
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module Libis
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module Workflow
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module Base
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# Base module for all workflow runs. It is created by an associated workflow when the workflow is executed.
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#
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# This module lacks the implementation for the data attributes. It functions as an interface that describes the
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# common functionality regardless of the storage implementation. These attributes require some implementation:
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#
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# - start_date: [Time] the timestamp of the execution of the run
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# - job: [Object] a reference to the Job this Run belongs to
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# - id: [String] (Optional) a unique run number
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#
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# Note that ::Libis::Workflow::Base::WorkItem is a parent module and therefore requires implementation of the
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# attributes of that module too.
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#
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# A simple in-memory implementation can be found in ::Libis::Workflow::Run
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module Run
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include ::Libis::Workflow::Base::WorkItem
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attr_accessor :tasks, :action
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def work_dir
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# noinspection RubyResolve
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dir = File.join(Libis::Workflow::Config.workdir, self.name)
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FileUtils.mkpath dir unless Dir.exist?(dir)
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dir
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end
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def name
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self.job.run_name(self.start_date)
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end
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def names
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Array.new
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end
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def namepath
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self.name
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end
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def workflow
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self.job.workflow
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end
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def logger
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self.properties['logger'] || self.job.logger rescue ::Libis::Workflow::Config.logger
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end
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# Execute the workflow.
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#
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# The action parameter defines how the execution of the tasks will behave:
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# - With the default :run action each task will be executed regardsless how the task performed on the item
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# previously.
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# - When using the :retry action a task will not perform on an item if it was successful the last time. This
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# allows you to retry a run when an temporary error (e.g. asynchronous wait or halt) occured.
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#
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# @param [Symbol] action the type of action to take during this run. :run or :retry
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def run(action = :run)
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self.action = action
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unless action == :retry
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self.start_date = Time.now
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self.options = workflow.prepare_input(self.options)
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end
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self.tasks = workflow.tasks
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configure_tasks self.options
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self.save!
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runner = Libis::Workflow::TaskRunner.new nil
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self.tasks.each do |task|
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runner << task
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end
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runner.run self
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end
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protected
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def configure_tasks(opts)
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self.tasks.each { |task| task.apply_options opts }
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end
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end
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end
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end
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end
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require 'backports/rails/hash'
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require 'libis/tools/extend/hash'
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require 'libis/workflow/config'
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require 'libis/workflow/status'
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require_relative 'logging'
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module Libis
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module Workflow
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module Base
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# Base module for all work items.
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#
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# This module lacks the implementation for the data attributes. It functions as an interface that describes the
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# common functionality regardless of the storage implementation. These attributes require some implementation:
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#
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# - parent: [Object|nil] a link to a parent work item. Work items can be organized in any hierarchy you think is
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# relevant for your workflow (e.g. directory[/directory...]/file/line or library/section/book/page). Of course
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# hierarchies are not mandatory.
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# - items: [Array] a list of child work items. see above.
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# - options: [Hash] a set of options for the task chain on how to deal with this work item. This attribute can be
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# used to fine-tune the behaviour of tasks for a particular work item.
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# - properties: [Hash] a set of properties, typically collected during the workflow processing and used to store
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# final or intermediate resulst of tasks. The ::Lias::Ingester::FileItem module uses this attribute to store the
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# properties (e.g. size, checksum, ...) of the file it represents.
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# - status_log: [Array] a list of all status changes the work item went through.
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# - summary: [Hash] collected statistics about the ingest for the work item and its children. This structure will
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# be filled in by the included task ::Lias::Ingester::Tasks::Analyzer wich is appended to the workflow by default.
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#
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# The module is created so that it is possible to implement an ActiveRecord/Datamapper/... implementation easily.
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# A simple in-memory implementation would require:
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#
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# attr_accessor :parent
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# attr_accessor :items
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# attr_accessor :options, :properties
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# attr_accessor :status_log
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# attr_accessor :summary
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#
|
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# def initialize
|
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# self.parent = nil
|
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# self.items = []
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# self.options = {}
|
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# self.properties = {}
|
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# self.status_log = []
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# self.summary = {}
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# end
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#
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# protected
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#
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# ## Method below should be adapted to match the implementation of the status array
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#
|
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# def add_status_log(info)
|
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# self.status_log << info
|
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# end
|
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#
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#
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module WorkItem
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include Enumerable
|
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include Libis::Workflow::Status
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include Libis::Workflow::Base::Logging
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# String representation of the identity of the work item.
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#
|
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# You may want to overwrite this method as it tries the :name property or whatever #inspect returns if that
|
65
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# failes. Typically this should return the key value, file name or id number. If that's what your :name property
|
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# contains, you're fine.
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#
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# @return [String] string identification for this work item.
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def name
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# noinspection RubyResolve
|
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self.properties['name'] || self.inspect
|
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end
|
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|
74
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def to_s;
|
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self.name;
|
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end
|
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|
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def names
|
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(self.parent.names rescue Array.new).push(name).compact
|
80
|
-
end
|
81
|
-
|
82
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def namepath;
|
83
|
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self.names.join('/');
|
84
|
-
end
|
85
|
-
|
86
|
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# File name safe version of the to_s output.
|
87
|
-
#
|
88
|
-
# The output should be safe to use as a file name to store work item
|
89
|
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# data. Typical use is when extra file items are created by a task and need to be stored on disk. The default
|
90
|
-
# implementation URL-encodes (%xx) all characters except alphanumeric, '.' and '-'.
|
91
|
-
#
|
92
|
-
# @return [String] file name
|
93
|
-
def to_filename
|
94
|
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self.to_s.gsub(/[^\w.-]/) { |s| '%%%02x' % s.ord }
|
95
|
-
end
|
96
|
-
|
97
|
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# Iterates over the work item clients and invokes code on each of them.
|
98
|
-
def each(&block)
|
99
|
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self.items.each(&block)
|
100
|
-
end
|
101
|
-
|
102
|
-
def size
|
103
|
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self.items.size
|
104
|
-
end
|
105
|
-
|
106
|
-
alias_method :count, :size
|
107
|
-
|
108
|
-
# Add a child work item
|
109
|
-
#
|
110
|
-
# @param [WorkItem] item to be added to the child list :items
|
111
|
-
def add_item(item)
|
112
|
-
return self unless item and item.is_a?(Libis::Workflow::Base::WorkItem)
|
113
|
-
self.items << item
|
114
|
-
item.parent = self
|
115
|
-
self.save!
|
116
|
-
item.save!
|
117
|
-
self
|
118
|
-
end
|
119
|
-
|
120
|
-
alias_method :<<, :add_item
|
121
|
-
|
122
|
-
# Get list of items.
|
123
|
-
#
|
124
|
-
# This method should return a list of items that can be accessed during long processing times.
|
125
|
-
def get_items
|
126
|
-
self.items
|
127
|
-
end
|
128
|
-
|
129
|
-
# Get list of items.
|
130
|
-
#
|
131
|
-
# This method should return a list of items that is safe to iterate over while it is being altered.
|
132
|
-
def get_item_list
|
133
|
-
self.items.dup
|
134
|
-
end
|
135
|
-
|
136
|
-
# Return item's parent
|
137
|
-
# @return [Libis::Workflow::Base::WorkItem]
|
138
|
-
def get_parent
|
139
|
-
self.parent
|
140
|
-
end
|
141
|
-
|
142
|
-
# go up the hierarchy and return the topmost work item
|
143
|
-
#
|
144
|
-
# @return [Libis::Workflow::Base::WorkItem]
|
145
|
-
def get_root
|
146
|
-
self.get_parent && self.get_parent.is_a?(Libis::Workflow::Base::WorkItem) && self.get_parent.get_root || self
|
147
|
-
end
|
148
|
-
|
149
|
-
# Get the top
|
150
|
-
#
|
151
|
-
# @return [Libis::Workflow::Base::Run]
|
152
|
-
def get_run
|
153
|
-
return self if self.is_a?(Libis::Workflow::Base::Run)
|
154
|
-
self.get_parent && self.get_parent.get_run || nil
|
155
|
-
end
|
156
|
-
|
157
|
-
# Dummy method. It is a placeholder for DB backed implementations. Wherever appropriate WorkItem#save will be
|
158
|
-
# called to save the current item's state. If state needs to persisted, you should override this method or make
|
159
|
-
# sure your persistence layer implements it in your class.
|
160
|
-
def save
|
161
|
-
end
|
162
|
-
|
163
|
-
# Dummy method. It is a placeholder for DB backed implementations. Wherever appropriate WorkItem#save will be
|
164
|
-
# called to save the current item's state. If state needs to persisted, you should override this method or make
|
165
|
-
# sure your persistence layer implements it in your class.
|
166
|
-
def save!
|
167
|
-
end
|
168
|
-
|
169
|
-
end
|
170
|
-
|
171
|
-
end
|
172
|
-
end
|
173
|
-
end
|
1
|
+
require 'backports/rails/hash'
|
2
|
+
require 'libis/tools/extend/hash'
|
3
|
+
|
4
|
+
require 'libis/workflow/config'
|
5
|
+
require 'libis/workflow/status'
|
6
|
+
require_relative 'logging'
|
7
|
+
|
8
|
+
module Libis
|
9
|
+
module Workflow
|
10
|
+
module Base
|
11
|
+
|
12
|
+
# Base module for all work items.
|
13
|
+
#
|
14
|
+
# This module lacks the implementation for the data attributes. It functions as an interface that describes the
|
15
|
+
# common functionality regardless of the storage implementation. These attributes require some implementation:
|
16
|
+
#
|
17
|
+
# - parent: [Object|nil] a link to a parent work item. Work items can be organized in any hierarchy you think is
|
18
|
+
# relevant for your workflow (e.g. directory[/directory...]/file/line or library/section/book/page). Of course
|
19
|
+
# hierarchies are not mandatory.
|
20
|
+
# - items: [Array] a list of child work items. see above.
|
21
|
+
# - options: [Hash] a set of options for the task chain on how to deal with this work item. This attribute can be
|
22
|
+
# used to fine-tune the behaviour of tasks for a particular work item.
|
23
|
+
# - properties: [Hash] a set of properties, typically collected during the workflow processing and used to store
|
24
|
+
# final or intermediate resulst of tasks. The ::Lias::Ingester::FileItem module uses this attribute to store the
|
25
|
+
# properties (e.g. size, checksum, ...) of the file it represents.
|
26
|
+
# - status_log: [Array] a list of all status changes the work item went through.
|
27
|
+
# - summary: [Hash] collected statistics about the ingest for the work item and its children. This structure will
|
28
|
+
# be filled in by the included task ::Lias::Ingester::Tasks::Analyzer wich is appended to the workflow by default.
|
29
|
+
#
|
30
|
+
# The module is created so that it is possible to implement an ActiveRecord/Datamapper/... implementation easily.
|
31
|
+
# A simple in-memory implementation would require:
|
32
|
+
#
|
33
|
+
# attr_accessor :parent
|
34
|
+
# attr_accessor :items
|
35
|
+
# attr_accessor :options, :properties
|
36
|
+
# attr_accessor :status_log
|
37
|
+
# attr_accessor :summary
|
38
|
+
#
|
39
|
+
# def initialize
|
40
|
+
# self.parent = nil
|
41
|
+
# self.items = []
|
42
|
+
# self.options = {}
|
43
|
+
# self.properties = {}
|
44
|
+
# self.status_log = []
|
45
|
+
# self.summary = {}
|
46
|
+
# end
|
47
|
+
#
|
48
|
+
# protected
|
49
|
+
#
|
50
|
+
# ## Method below should be adapted to match the implementation of the status array
|
51
|
+
#
|
52
|
+
# def add_status_log(info)
|
53
|
+
# self.status_log << info
|
54
|
+
# end
|
55
|
+
#
|
56
|
+
#
|
57
|
+
module WorkItem
|
58
|
+
include Enumerable
|
59
|
+
include Libis::Workflow::Status
|
60
|
+
include Libis::Workflow::Base::Logging
|
61
|
+
|
62
|
+
# String representation of the identity of the work item.
|
63
|
+
#
|
64
|
+
# You may want to overwrite this method as it tries the :name property or whatever #inspect returns if that
|
65
|
+
# failes. Typically this should return the key value, file name or id number. If that's what your :name property
|
66
|
+
# contains, you're fine.
|
67
|
+
#
|
68
|
+
# @return [String] string identification for this work item.
|
69
|
+
def name
|
70
|
+
# noinspection RubyResolve
|
71
|
+
self.properties['name'] || self.inspect
|
72
|
+
end
|
73
|
+
|
74
|
+
def to_s;
|
75
|
+
self.name;
|
76
|
+
end
|
77
|
+
|
78
|
+
def names
|
79
|
+
(self.parent.names rescue Array.new).push(name).compact
|
80
|
+
end
|
81
|
+
|
82
|
+
def namepath;
|
83
|
+
self.names.join('/');
|
84
|
+
end
|
85
|
+
|
86
|
+
# File name safe version of the to_s output.
|
87
|
+
#
|
88
|
+
# The output should be safe to use as a file name to store work item
|
89
|
+
# data. Typical use is when extra file items are created by a task and need to be stored on disk. The default
|
90
|
+
# implementation URL-encodes (%xx) all characters except alphanumeric, '.' and '-'.
|
91
|
+
#
|
92
|
+
# @return [String] file name
|
93
|
+
def to_filename
|
94
|
+
self.to_s.gsub(/[^\w.-]/) { |s| '%%%02x' % s.ord }
|
95
|
+
end
|
96
|
+
|
97
|
+
# Iterates over the work item clients and invokes code on each of them.
|
98
|
+
def each(&block)
|
99
|
+
self.items.each(&block)
|
100
|
+
end
|
101
|
+
|
102
|
+
def size
|
103
|
+
self.items.size
|
104
|
+
end
|
105
|
+
|
106
|
+
alias_method :count, :size
|
107
|
+
|
108
|
+
# Add a child work item
|
109
|
+
#
|
110
|
+
# @param [WorkItem] item to be added to the child list :items
|
111
|
+
def add_item(item)
|
112
|
+
return self unless item and item.is_a?(Libis::Workflow::Base::WorkItem)
|
113
|
+
self.items << item
|
114
|
+
item.parent = self
|
115
|
+
self.save!
|
116
|
+
item.save!
|
117
|
+
self
|
118
|
+
end
|
119
|
+
|
120
|
+
alias_method :<<, :add_item
|
121
|
+
|
122
|
+
# Get list of items.
|
123
|
+
#
|
124
|
+
# This method should return a list of items that can be accessed during long processing times.
|
125
|
+
def get_items
|
126
|
+
self.items
|
127
|
+
end
|
128
|
+
|
129
|
+
# Get list of items.
|
130
|
+
#
|
131
|
+
# This method should return a list of items that is safe to iterate over while it is being altered.
|
132
|
+
def get_item_list
|
133
|
+
self.items.dup
|
134
|
+
end
|
135
|
+
|
136
|
+
# Return item's parent
|
137
|
+
# @return [Libis::Workflow::Base::WorkItem]
|
138
|
+
def get_parent
|
139
|
+
self.parent
|
140
|
+
end
|
141
|
+
|
142
|
+
# go up the hierarchy and return the topmost work item
|
143
|
+
#
|
144
|
+
# @return [Libis::Workflow::Base::WorkItem]
|
145
|
+
def get_root
|
146
|
+
self.get_parent && self.get_parent.is_a?(Libis::Workflow::Base::WorkItem) && self.get_parent.get_root || self
|
147
|
+
end
|
148
|
+
|
149
|
+
# Get the top
|
150
|
+
#
|
151
|
+
# @return [Libis::Workflow::Base::Run]
|
152
|
+
def get_run
|
153
|
+
return self if self.is_a?(Libis::Workflow::Base::Run)
|
154
|
+
self.get_parent && self.get_parent.get_run || nil
|
155
|
+
end
|
156
|
+
|
157
|
+
# Dummy method. It is a placeholder for DB backed implementations. Wherever appropriate WorkItem#save will be
|
158
|
+
# called to save the current item's state. If state needs to persisted, you should override this method or make
|
159
|
+
# sure your persistence layer implements it in your class.
|
160
|
+
def save
|
161
|
+
end
|
162
|
+
|
163
|
+
# Dummy method. It is a placeholder for DB backed implementations. Wherever appropriate WorkItem#save will be
|
164
|
+
# called to save the current item's state. If state needs to persisted, you should override this method or make
|
165
|
+
# sure your persistence layer implements it in your class.
|
166
|
+
def save!
|
167
|
+
end
|
168
|
+
|
169
|
+
end
|
170
|
+
|
171
|
+
end
|
172
|
+
end
|
173
|
+
end
|